Wall clock time and date at job start Tue Mar 31 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46944 * 2 1 4 4 C 1.52999 * 109.47141 * 240.00150 * 2 1 3 5 5 C 1.52993 * 109.46961 * 119.99872 * 2 1 3 6 6 H 1.09007 * 109.50324 * 180.02562 * 5 2 1 7 7 C 1.53121 * 109.50321 * 60.00307 * 5 2 1 8 8 C 1.53123 * 109.16100 * 182.36270 * 7 5 2 9 9 C 1.53040 * 109.27732 * 57.65071 * 8 7 5 10 10 N 1.46843 * 109.52632 * 300.82210 * 9 8 7 11 11 C 1.46902 * 111.00047 * 185.83768 * 10 9 8 12 12 C 1.50699 * 109.46840 * 66.04438 * 11 10 9 13 13 O 1.21280 * 120.00276 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99692 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00016 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47115 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.46852 * 111.19879 * 61.74037 * 10 9 8 25 25 H 1.09000 * 109.47561 * 300.00400 * 1 2 3 26 26 H 1.09008 * 109.46935 * 59.99784 * 1 2 3 27 27 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47226 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47584 * 299.99903 * 3 2 1 30 30 H 1.09004 * 109.47156 * 59.99918 * 3 2 1 31 31 H 1.08998 * 109.46996 * 299.99968 * 4 2 1 32 32 H 1.08998 * 109.47083 * 60.00283 * 4 2 1 33 33 H 1.09002 * 109.47088 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.52102 * 62.45836 * 7 5 2 35 35 H 1.08995 * 109.57557 * 302.29760 * 7 5 2 36 36 H 1.08998 * 109.50238 * 297.71293 * 8 7 5 37 37 H 1.08994 * 109.50316 * 177.59549 * 8 7 5 38 38 H 1.08997 * 109.46216 * 180.80138 * 9 8 7 39 39 H 1.09007 * 109.44645 * 60.83352 * 9 8 7 40 40 H 1.09002 * 109.46978 * 306.04768 * 11 10 9 41 41 H 1.09000 * 109.46932 * 186.04705 * 11 10 9 42 42 H 0.97001 * 119.99765 * 359.97438 * 14 12 11 43 43 H 1.09007 * 109.47078 * 59.99547 * 15 14 12 44 44 H 1.09003 * 109.46733 * 300.00270 * 15 14 12 45 45 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.45924 * 58.27582 * 24 10 9 47 47 H 1.09000 * 109.46104 * 178.24218 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2492 6 1 3.1300 -0.7211 1.2500 7 6 1.5300 -2.1650 1.2499 8 6 1.9954 -2.8617 2.5316 9 6 1.4837 -2.0819 3.7449 10 7 1.9996 -0.7079 3.6985 11 6 1.6428 0.0299 4.9176 12 6 2.3521 -0.5797 6.0993 13 8 3.0832 -1.5344 5.9414 14 7 2.1740 -0.0638 7.3317 15 6 2.8639 -0.6560 8.4804 16 6 2.4978 0.1008 9.7310 17 1 1.8194 0.9394 9.6758 18 6 3.0298 -0.2766 10.9458 19 7 3.8563 -1.2974 11.0131 20 14 2.5765 0.6620 12.4960 21 1 3.5393 1.7739 12.7009 22 1 1.2049 1.2141 12.3572 23 1 2.6249 -0.2560 13.6623 24 6 1.5270 -0.0035 2.4997 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.9284 -2.6924 0.3833 35 1 0.4408 -2.1676 1.2089 36 1 3.0846 -2.8945 2.5530 37 1 1.5996 -3.8770 2.5581 38 1 1.8253 -2.5675 4.6591 39 1 0.3940 -2.0615 3.7300 40 1 0.5653 -0.0245 5.0730 41 1 1.9426 1.0726 4.8121 42 1 1.5895 0.7000 7.4579 43 1 3.9414 -0.6009 8.3250 44 1 2.5649 -1.6989 8.5856 45 1 4.2308 -1.5627 11.8677 46 1 0.4371 0.0073 2.4910 47 1 1.9001 1.0206 2.5095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796576579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:45 Heat of formation + Delta-G solvation = -58.782676 kcal Electronic energy + Delta-G solvation = -22974.023582 eV Core-core repulsion = 19769.640459 eV Total energy + Delta-G solvation = -3204.383123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08587 -38.64061 -36.34782 -34.09592 -32.93299 -32.26250 -29.88930 -28.43524 -27.55608 -27.53652 -26.17263 -23.53081 -23.04748 -22.07187 -20.14846 -19.58407 -18.45107 -16.99995 -16.22418 -15.65674 -15.26071 -15.03428 -14.84155 -14.55729 -14.34837 -14.22161 -14.02875 -13.63442 -13.45621 -13.23260 -12.70451 -12.52794 -12.23763 -12.11696 -12.04685 -11.90912 -11.79470 -11.62673 -11.29687 -11.22324 -10.99720 -10.94942 -10.83074 -10.73631 -10.43667 -10.30784 -10.15436 -10.06695 -9.37834 -8.91163 -8.71137 -8.09454 -7.81112 -6.15337 -4.22088 3.24777 3.30748 3.33117 3.44082 3.72380 4.27742 4.44952 4.52185 4.59816 4.61558 4.96650 5.00448 5.09808 5.20646 5.26282 5.35456 5.38238 5.42919 5.44354 5.45863 5.55556 5.57515 5.60701 5.64089 5.70423 5.73557 5.75346 5.79349 5.89551 5.94176 5.98416 6.05428 6.09544 6.21744 6.26380 6.39563 6.49065 7.11397 7.27093 7.36516 7.49364 7.54948 7.70251 7.99261 8.67513 8.81691 9.17331 9.44825 10.94897 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038576 B = 0.002926 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.673682 B = 9568.047382 C = 9942.723416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.071 4.071 6 H 0.079 0.921 7 C -0.118 4.118 8 C -0.114 4.114 9 C 0.051 3.949 10 N -0.519 5.519 11 C 0.036 3.964 12 C 0.498 3.502 13 O -0.538 6.538 14 N -0.716 5.716 15 C 0.252 3.748 16 C -0.543 4.543 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.284 1.284 24 C 0.059 3.941 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.022 0.978 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.389 0.611 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.266 0.734 46 H 0.033 0.967 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 3.249 -22.745 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.201 4.201 4 C -0.199 4.199 5 C -0.090 4.090 6 H 0.097 0.903 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.076 4.076 10 N -0.243 5.243 11 C -0.095 4.095 12 C 0.282 3.718 13 O -0.416 6.416 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.210 1.210 24 C -0.069 4.069 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.221 0.779 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.487 2.404 -22.713 23.743 hybrid contribution -1.358 0.961 1.079 1.983 sum -7.844 3.365 -21.634 23.257 Atomic orbital electron populations 1.21996 0.94913 1.01854 1.01518 1.20529 0.95490 0.95433 0.94992 1.21929 1.01188 0.95399 1.01576 1.21902 1.01041 1.00315 0.96606 1.21169 1.01018 0.94369 0.92450 0.90261 1.21765 1.00448 0.95426 0.97934 1.21544 1.02082 0.97928 0.93624 1.22260 0.95702 0.88951 1.00716 1.61515 1.60216 1.02198 1.00364 1.21984 0.98332 0.98954 0.90238 1.20317 0.82784 0.84527 0.84136 1.90624 1.38290 1.27630 1.85023 1.46457 1.48229 1.34077 1.07769 1.19067 0.92678 0.94092 0.81074 1.21235 1.29118 1.15836 0.91920 0.91950 1.24958 0.94759 0.95103 0.99235 1.69979 1.30218 1.26021 1.26081 0.86421 0.78841 0.79524 0.82151 1.20457 1.19776 1.21014 1.22268 0.97264 0.97718 0.89655 0.92478 0.93027 0.92412 0.92513 0.92956 0.92387 0.92393 0.92972 0.92640 0.91861 0.92198 0.90949 0.91874 0.88452 0.96004 0.92705 0.88533 0.77887 0.95581 0.95670 0.92464 0.94877 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.77 37.16 0.29 -0.83 16 2 C -0.06 -0.52 0.57 -154.51 -0.09 -0.61 16 3 C -0.14 -1.13 8.13 37.16 0.30 -0.82 16 4 C -0.14 -1.05 8.12 37.16 0.30 -0.75 16 5 C -0.07 -0.72 1.71 -90.54 -0.15 -0.87 16 6 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 7 C -0.12 -1.19 4.56 -26.61 -0.12 -1.31 16 8 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 9 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 10 N -0.52 -7.58 4.39 -236.11 -1.04 -8.62 16 11 C 0.04 0.54 5.45 -4.98 -0.03 0.51 16 12 C 0.50 10.04 7.50 -10.98 -0.08 9.96 16 13 O -0.54 -12.98 14.35 5.56 0.08 -12.90 16 14 N -0.72 -15.17 5.55 -61.47 -0.34 -15.51 16 15 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 16 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.06 0.66 4.04 -3.83 -0.02 0.65 16 25 H 0.06 0.46 6.41 -51.93 -0.33 0.12 16 26 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 31 H 0.06 0.42 6.49 -51.93 -0.34 0.09 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 35 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.76 5.80 -51.93 -0.30 1.46 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 41 H 0.10 1.24 7.98 -51.93 -0.41 0.82 16 42 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 43 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.03 0.36 6.39 -51.93 -0.33 0.03 16 47 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -31.41 354.73 -8.79 -40.20 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.33 Total: 2.80 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.22 Total: -1.69 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.64 Total: -49.67 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.41 -8.79 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796576579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.579 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds