Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46944 * 2 1 4 4 C 1.52999 * 109.47141 * 240.00150 * 2 1 3 5 5 C 1.52993 * 109.46961 * 119.99872 * 2 1 3 6 6 H 1.09007 * 109.50324 * 180.02562 * 5 2 1 7 7 C 1.53121 * 109.50321 * 60.00307 * 5 2 1 8 8 C 1.53123 * 109.16100 * 182.36270 * 7 5 2 9 9 C 1.53040 * 109.27732 * 57.65071 * 8 7 5 10 10 N 1.46843 * 109.52632 * 300.82210 * 9 8 7 11 11 C 1.46902 * 111.00047 * 185.83768 * 10 9 8 12 12 C 1.50699 * 109.46840 * 66.04438 * 11 10 9 13 13 O 1.21280 * 120.00276 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99692 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00016 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47115 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.46852 * 111.19879 * 61.74037 * 10 9 8 25 25 H 1.09000 * 109.47561 * 300.00400 * 1 2 3 26 26 H 1.09008 * 109.46935 * 59.99784 * 1 2 3 27 27 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47226 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47584 * 299.99903 * 3 2 1 30 30 H 1.09004 * 109.47156 * 59.99918 * 3 2 1 31 31 H 1.08998 * 109.46996 * 299.99968 * 4 2 1 32 32 H 1.08998 * 109.47083 * 60.00283 * 4 2 1 33 33 H 1.09002 * 109.47088 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.52102 * 62.45836 * 7 5 2 35 35 H 1.08995 * 109.57557 * 302.29760 * 7 5 2 36 36 H 1.08998 * 109.50238 * 297.71293 * 8 7 5 37 37 H 1.08994 * 109.50316 * 177.59549 * 8 7 5 38 38 H 1.08997 * 109.46216 * 180.80138 * 9 8 7 39 39 H 1.09007 * 109.44645 * 60.83352 * 9 8 7 40 40 H 1.09002 * 109.46978 * 306.04768 * 11 10 9 41 41 H 1.09000 * 109.46932 * 186.04705 * 11 10 9 42 42 H 0.97001 * 119.99765 * 359.97438 * 14 12 11 43 43 H 1.09007 * 109.47078 * 59.99547 * 15 14 12 44 44 H 1.09003 * 109.46733 * 300.00270 * 15 14 12 45 45 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.45924 * 58.27582 * 24 10 9 47 47 H 1.09000 * 109.46104 * 178.24218 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2492 6 1 3.1300 -0.7211 1.2500 7 6 1.5300 -2.1650 1.2499 8 6 1.9954 -2.8617 2.5316 9 6 1.4837 -2.0819 3.7449 10 7 1.9996 -0.7079 3.6985 11 6 1.6428 0.0299 4.9176 12 6 2.3521 -0.5797 6.0993 13 8 3.0832 -1.5344 5.9414 14 7 2.1740 -0.0638 7.3317 15 6 2.8639 -0.6560 8.4804 16 6 2.4978 0.1008 9.7310 17 1 1.8194 0.9394 9.6758 18 6 3.0298 -0.2766 10.9458 19 7 3.8563 -1.2974 11.0131 20 14 2.5765 0.6620 12.4960 21 1 3.5393 1.7739 12.7009 22 1 1.2049 1.2141 12.3572 23 1 2.6249 -0.2560 13.6623 24 6 1.5270 -0.0035 2.4997 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.9284 -2.6924 0.3833 35 1 0.4408 -2.1676 1.2089 36 1 3.0846 -2.8945 2.5530 37 1 1.5996 -3.8770 2.5581 38 1 1.8253 -2.5675 4.6591 39 1 0.3940 -2.0615 3.7300 40 1 0.5653 -0.0245 5.0730 41 1 1.9426 1.0726 4.8121 42 1 1.5895 0.7000 7.4579 43 1 3.9414 -0.6009 8.3250 44 1 2.5649 -1.6989 8.5856 45 1 4.2308 -1.5627 11.8677 46 1 0.4371 0.0073 2.4910 47 1 1.9001 1.0206 2.5095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796576579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = -80.220444 kcal Electronic energy + Delta-G solvation = -22974.953193 eV Core-core repulsion = 19769.640459 eV Total energy + Delta-G solvation = -3205.312735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15523 -40.07201 -37.36999 -36.04591 -34.37094 -33.88734 -30.82107 -29.99292 -28.53591 -28.13250 -27.54991 -24.87601 -24.24494 -23.51494 -21.42038 -20.98246 -19.32277 -18.74812 -17.54680 -17.28666 -16.68743 -16.58487 -16.00812 -15.82011 -15.39566 -15.26628 -15.05490 -14.66901 -14.52813 -14.33593 -14.15143 -13.92001 -13.82107 -13.46611 -12.91708 -12.89640 -12.80136 -12.68225 -12.65564 -12.45448 -12.33251 -12.22796 -11.94295 -11.85134 -11.58795 -11.48428 -11.22941 -11.10773 -10.87042 -10.79954 -10.50244 -9.79106 -9.18528 -8.29333 -6.46069 1.42657 1.45314 1.56462 1.81584 2.28028 2.47430 3.05422 3.07808 3.74824 3.81644 3.88934 3.99919 4.13520 4.22633 4.26735 4.32716 4.38972 4.47906 4.53564 4.60310 4.68426 4.77782 4.85210 4.88382 4.92452 5.00992 5.03753 5.09373 5.11474 5.14682 5.16306 5.20650 5.24672 5.27454 5.31333 5.41866 5.46625 5.49985 5.61842 5.68229 5.71747 5.85339 6.04348 6.24241 6.65486 6.96889 7.23722 7.55287 8.82983 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038576 B = 0.002926 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.673682 B = 9568.047382 C = 9942.723416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.069 4.069 6 H 0.060 0.940 7 C -0.111 4.111 8 C -0.112 4.112 9 C 0.054 3.946 10 N -0.541 5.541 11 C 0.050 3.950 12 C 0.493 3.507 13 O -0.584 6.584 14 N -0.710 5.710 15 C 0.269 3.731 16 C -0.555 4.555 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.270 1.270 22 H -0.255 1.255 23 H -0.284 1.284 24 C 0.061 3.939 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.408 0.592 43 H -0.016 1.016 44 H -0.015 1.015 45 H 0.269 0.731 46 H 0.047 0.953 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 5.446 -23.891 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 C -0.201 4.201 4 C -0.198 4.198 5 C -0.088 4.088 6 H 0.078 0.922 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.074 4.074 10 N -0.266 5.266 11 C -0.081 4.081 12 C 0.280 3.720 13 O -0.464 6.464 14 N -0.361 5.361 15 C 0.146 3.854 16 C -0.593 4.593 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.178 1.178 23 H -0.210 1.210 24 C -0.066 4.066 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.243 0.757 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.735 4.638 -23.902 25.868 hybrid contribution -0.623 0.220 1.371 1.522 sum -9.358 4.858 -22.531 24.876 Atomic orbital electron populations 1.21983 0.94122 1.02049 1.01971 1.20481 0.95997 0.95378 0.94050 1.21931 1.00811 0.95244 1.02112 1.21898 1.00758 1.00503 0.96651 1.21144 0.99905 0.94620 0.93090 0.92162 1.21721 1.01076 0.95227 0.96765 1.21521 1.00661 0.98601 0.94186 1.22137 0.96324 0.89267 0.99692 1.61472 1.61351 1.02403 1.01366 1.21916 0.98884 0.99552 0.87755 1.21386 0.81999 0.83624 0.84977 1.90612 1.40336 1.29730 1.85737 1.46192 1.48311 1.34657 1.06988 1.18482 0.90696 0.92601 0.83585 1.21630 1.29383 1.16290 0.92013 0.89769 1.26094 0.94324 0.95937 1.03372 1.70147 1.31632 1.28051 1.27240 0.85147 0.79377 0.77849 0.76780 1.19579 1.17830 1.20980 1.22349 0.98076 0.97821 0.88330 0.92581 0.92052 0.92335 0.93172 0.91912 0.92365 0.92182 0.91965 0.93160 0.90650 0.91032 0.93178 0.90947 0.92742 0.94649 0.89989 0.85672 0.75687 0.99779 0.99707 0.92269 0.93475 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.77 71.98 0.56 -1.20 16 2 C -0.06 -0.81 0.57 -52.18 -0.03 -0.84 16 3 C -0.14 -1.92 8.13 71.98 0.58 -1.33 16 4 C -0.14 -1.78 8.12 71.98 0.58 -1.20 16 5 C -0.07 -1.27 1.71 -10.74 -0.02 -1.29 16 6 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 7 C -0.11 -2.04 4.56 30.68 0.14 -1.90 16 8 C -0.11 -2.76 6.09 30.65 0.19 -2.58 16 9 C 0.05 1.58 5.11 86.33 0.44 2.02 16 10 N -0.54 -15.34 4.39 -900.90 -3.96 -19.30 16 11 C 0.05 1.39 5.45 85.56 0.47 1.86 16 12 C 0.49 20.25 7.50 87.66 0.66 20.91 16 13 O -0.58 -29.75 14.35 -3.03 -0.04 -29.80 16 14 N -0.71 -30.51 5.55 -466.78 -2.59 -33.10 16 15 C 0.27 15.07 5.43 85.63 0.46 15.54 16 16 C -0.56 -30.54 9.28 25.60 0.24 -30.30 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.12 5.46 84.66 0.46 0.58 16 19 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 20 Si 0.99 42.60 29.54 68.60 2.03 44.62 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 C 0.06 1.24 4.04 86.32 0.35 1.59 16 25 H 0.06 0.70 6.41 -2.39 -0.02 0.69 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.71 6.38 -2.39 -0.02 0.70 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 6.46 -2.38 -0.02 0.75 16 31 H 0.06 0.73 6.49 -2.39 -0.02 0.72 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.22 6.57 -2.39 -0.02 1.21 16 35 H 0.07 1.18 6.32 -2.39 -0.02 1.17 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 2.08 5.80 -2.39 -0.01 2.06 16 39 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 40 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 41 H 0.13 2.83 7.98 -2.39 -0.02 2.81 16 42 H 0.41 14.27 8.32 -92.71 -0.77 13.50 16 43 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.05 0.85 6.39 -2.38 -0.02 0.84 16 47 H 0.08 1.55 6.36 -2.39 -0.02 1.54 16 Total: -1.00 -71.79 354.73 0.97 -70.81 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.17 Total: 21.63 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.08 Total: 1.85 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -6.26 Total: -109.12 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.04 Total: -29.80 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.79 0.97 -70.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796576579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.409 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds