Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46532 * 2 1 4 4 C 1.52997 * 109.46940 * 240.00187 * 2 1 3 5 5 C 1.52999 * 109.47318 * 119.99704 * 2 1 3 6 6 H 1.09002 * 109.50363 * 180.02562 * 5 2 1 7 7 C 1.53116 * 109.53493 * 300.09975 * 5 2 1 8 8 C 1.53121 * 109.15919 * 177.61327 * 7 5 2 9 9 C 1.53038 * 109.28145 * 302.34666 * 8 7 5 10 10 N 1.46852 * 109.51991 * 59.17795 * 9 8 7 11 11 C 1.46907 * 110.99780 * 174.16427 * 10 9 8 12 12 C 1.50697 * 109.46705 * 294.21040 * 11 10 9 13 13 O 1.21285 * 120.00404 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99811 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00235 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47435 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99869 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00554 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99548 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47387 * 89.99997 * 20 18 16 22 22 H 1.48503 * 109.46955 * 210.00050 * 20 18 16 23 23 H 1.48498 * 109.47145 * 329.99672 * 20 18 16 24 24 C 1.46851 * 111.19904 * 298.25890 * 10 9 8 25 25 H 1.09000 * 109.47077 * 299.99549 * 1 2 3 26 26 H 1.08997 * 109.47490 * 60.00207 * 1 2 3 27 27 H 1.08999 * 109.46911 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46709 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47167 * 299.99324 * 3 2 1 30 30 H 1.08997 * 109.47659 * 60.00000 * 3 2 1 31 31 H 1.08999 * 109.47085 * 299.99608 * 4 2 1 32 32 H 1.08994 * 109.47596 * 59.99980 * 4 2 1 33 33 H 1.09001 * 109.46787 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.52585 * 297.52121 * 7 5 2 35 35 H 1.09000 * 109.52333 * 57.71013 * 7 5 2 36 36 H 1.09004 * 109.50344 * 182.40461 * 8 7 5 37 37 H 1.08998 * 109.53750 * 62.30672 * 8 7 5 38 38 H 1.08996 * 109.46179 * 299.16359 * 9 8 7 39 39 H 1.09000 * 109.46642 * 179.19034 * 9 8 7 40 40 H 1.08999 * 109.47304 * 54.20548 * 11 10 9 41 41 H 1.08999 * 109.46587 * 174.20894 * 11 10 9 42 42 H 0.97000 * 119.99685 * 359.97438 * 14 12 11 43 43 H 1.08998 * 109.47297 * 299.99968 * 15 14 12 44 44 H 1.09003 * 109.46931 * 59.99800 * 15 14 12 45 45 H 0.96995 * 120.00414 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.46045 * 301.72942 * 24 10 9 47 47 H 1.08998 * 109.45058 * 181.75654 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 1 3.1301 -0.7211 1.2500 7 6 1.5285 -0.0019 2.5004 8 6 1.9940 -0.7643 3.7441 9 6 1.4840 -2.2055 3.6736 10 7 2.0015 -2.8503 2.4599 11 6 1.6464 -4.2755 2.4287 12 6 2.3509 -4.9933 3.5509 13 8 3.0777 -4.3785 4.3024 14 7 2.1742 -6.3189 3.7188 15 6 2.8594 -7.0169 4.8093 16 6 2.4951 -8.4789 4.7774 17 1 1.8208 -8.8509 4.0202 18 6 3.0225 -9.3414 5.7149 19 7 3.8431 -8.8883 6.6372 20 14 2.5714 -11.1537 5.6748 21 1 3.5398 -11.8861 4.8201 22 1 2.6124 -11.7045 7.0533 23 1 1.2032 -11.3110 5.1194 24 6 1.5288 -2.1636 1.2510 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.9257 1.0128 2.5253 35 1 0.4392 0.0327 2.4809 36 1 1.5971 -0.2811 4.6369 37 1 3.0832 -0.7653 3.7846 38 1 0.3944 -2.2044 3.6478 39 1 1.8258 -2.7551 4.5506 40 1 0.5684 -4.3840 2.5481 41 1 1.9514 -4.7050 1.4744 42 1 1.5932 -6.8107 3.1175 43 1 3.9374 -6.9081 4.6898 44 1 2.5546 -6.5876 5.7637 45 1 4.2144 -9.4952 7.2965 46 1 0.4390 -2.1626 1.2366 47 1 1.9033 -2.6828 0.3687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796576582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -58.709587 kcal Electronic energy + Delta-G solvation = -22974.898456 eV Core-core repulsion = 19770.518503 eV Total energy + Delta-G solvation = -3204.379954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08640 -38.64186 -36.34565 -34.09709 -32.93281 -32.26447 -29.88862 -28.43549 -27.55620 -27.53677 -26.17301 -23.53030 -23.04659 -22.07232 -20.14850 -19.58522 -18.45077 -17.00004 -16.22399 -15.65701 -15.25887 -15.03509 -14.84371 -14.55773 -14.34832 -14.22193 -14.02770 -13.63428 -13.45650 -13.23192 -12.70503 -12.52662 -12.23760 -12.11880 -12.04741 -11.90957 -11.79458 -11.62631 -11.29791 -11.22271 -10.99712 -10.94913 -10.82999 -10.73532 -10.43608 -10.30883 -10.15389 -10.06676 -9.37820 -8.90999 -8.71236 -8.09485 -7.81179 -6.15310 -4.22137 3.24785 3.30761 3.33101 3.43910 3.72450 4.27705 4.44893 4.52183 4.59872 4.61546 4.96716 5.00470 5.09930 5.20678 5.26364 5.35496 5.38268 5.42957 5.44415 5.45933 5.55584 5.57544 5.60729 5.64076 5.70426 5.73580 5.75450 5.79409 5.89586 5.94226 5.98464 6.05494 6.09585 6.21853 6.26438 6.39780 6.49187 7.11427 7.27142 7.36486 7.49286 7.54916 7.70182 7.99222 8.67427 8.81616 9.17218 9.44830 10.94930 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038602 B = 0.002926 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.176674 B = 9567.242169 C = 9942.961776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.071 4.071 6 H 0.079 0.921 7 C -0.118 4.118 8 C -0.114 4.114 9 C 0.051 3.949 10 N -0.519 5.519 11 C 0.036 3.964 12 C 0.498 3.502 13 O -0.538 6.538 14 N -0.716 5.716 15 C 0.252 3.748 16 C -0.543 4.543 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.059 3.941 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.389 0.611 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.266 0.734 46 H 0.033 0.967 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 18.065 -14.208 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.090 4.090 6 H 0.097 0.903 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.077 4.077 10 N -0.243 5.243 11 C -0.095 4.095 12 C 0.282 3.718 13 O -0.416 6.416 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.069 4.069 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.221 0.779 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.449 18.460 -13.457 23.737 hybrid contribution -1.356 -1.417 -0.296 1.984 sum -7.806 17.043 -13.753 23.250 Atomic orbital electron populations 1.21996 0.94913 1.01860 1.01513 1.20532 0.95489 0.95435 0.94990 1.21902 1.01040 0.95383 1.01537 1.21928 1.01188 1.00331 0.96645 1.21169 1.01017 0.93365 0.93458 0.90263 1.21764 1.00443 0.98835 0.94523 1.21543 1.02082 0.94456 0.97092 1.22267 0.95695 0.95460 0.94243 1.61524 1.60200 1.00385 1.02186 1.21983 0.98363 0.89640 0.99522 1.20317 0.82722 0.82947 0.85777 1.90624 1.38423 1.66303 1.46226 1.46456 1.48536 1.07556 1.33973 1.19068 0.92745 0.90672 0.84431 1.21234 1.29435 0.92558 1.14884 0.91950 1.24952 0.94761 0.99330 0.94995 1.69970 1.30503 1.35628 1.16200 0.86423 0.78839 0.84257 0.77432 1.20457 1.21015 1.19778 1.22270 0.97269 0.94589 0.92789 0.92413 0.93020 0.92483 0.92642 0.92973 0.92395 0.92384 0.92954 0.92513 0.91857 0.92195 0.91880 0.90952 0.96010 0.88409 0.92710 0.88529 0.77885 0.95572 0.95672 0.92459 0.94878 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.77 37.16 0.29 -0.83 16 2 C -0.06 -0.52 0.57 -154.51 -0.09 -0.61 16 3 C -0.14 -1.05 8.12 37.16 0.30 -0.75 16 4 C -0.14 -1.13 8.12 37.16 0.30 -0.82 16 5 C -0.07 -0.72 1.71 -90.54 -0.15 -0.87 16 6 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -1.19 4.57 -26.61 -0.12 -1.31 16 8 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 9 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 10 N -0.52 -7.59 4.40 -236.11 -1.04 -8.62 16 11 C 0.04 0.54 5.45 -4.97 -0.03 0.51 16 12 C 0.50 10.04 7.50 -10.99 -0.08 9.96 16 13 O -0.54 -12.98 14.33 5.55 0.08 -12.90 16 14 N -0.72 -15.16 5.55 -61.47 -0.34 -15.50 16 15 C 0.25 6.72 5.43 -5.19 -0.03 6.70 16 16 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.06 0.66 4.04 -3.83 -0.02 0.64 16 25 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 6.41 -51.93 -0.33 0.12 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 6.49 -51.93 -0.34 0.09 16 31 H 0.06 0.46 6.45 -51.93 -0.34 0.13 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.57 6.58 -51.93 -0.34 0.23 16 35 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 1.77 5.78 -51.93 -0.30 1.47 16 40 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 41 H 0.10 1.24 7.99 -51.93 -0.41 0.82 16 42 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.03 0.36 6.38 -51.93 -0.33 0.03 16 47 H 0.07 0.79 6.35 -51.93 -0.33 0.46 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -31.40 354.69 -8.79 -40.19 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.33 Total: 2.82 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.22 Total: -1.70 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.64 Total: -49.66 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.40 -8.79 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796576582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.518 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds