Wall clock time and date at job start Tue Mar 31 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46532 * 2 1 4 4 C 1.52997 * 109.46940 * 240.00187 * 2 1 3 5 5 C 1.52999 * 109.47318 * 119.99704 * 2 1 3 6 6 H 1.09002 * 109.50363 * 180.02562 * 5 2 1 7 7 C 1.53116 * 109.53493 * 300.09975 * 5 2 1 8 8 C 1.53121 * 109.15919 * 177.61327 * 7 5 2 9 9 C 1.53038 * 109.28145 * 302.34666 * 8 7 5 10 10 N 1.46852 * 109.51991 * 59.17795 * 9 8 7 11 11 C 1.46907 * 110.99780 * 174.16427 * 10 9 8 12 12 C 1.50697 * 109.46705 * 294.21040 * 11 10 9 13 13 O 1.21285 * 120.00404 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99811 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00235 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47435 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99869 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00554 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99548 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47387 * 89.99997 * 20 18 16 22 22 H 1.48503 * 109.46955 * 210.00050 * 20 18 16 23 23 H 1.48498 * 109.47145 * 329.99672 * 20 18 16 24 24 C 1.46851 * 111.19904 * 298.25890 * 10 9 8 25 25 H 1.09000 * 109.47077 * 299.99549 * 1 2 3 26 26 H 1.08997 * 109.47490 * 60.00207 * 1 2 3 27 27 H 1.08999 * 109.46911 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46709 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47167 * 299.99324 * 3 2 1 30 30 H 1.08997 * 109.47659 * 60.00000 * 3 2 1 31 31 H 1.08999 * 109.47085 * 299.99608 * 4 2 1 32 32 H 1.08994 * 109.47596 * 59.99980 * 4 2 1 33 33 H 1.09001 * 109.46787 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.52585 * 297.52121 * 7 5 2 35 35 H 1.09000 * 109.52333 * 57.71013 * 7 5 2 36 36 H 1.09004 * 109.50344 * 182.40461 * 8 7 5 37 37 H 1.08998 * 109.53750 * 62.30672 * 8 7 5 38 38 H 1.08996 * 109.46179 * 299.16359 * 9 8 7 39 39 H 1.09000 * 109.46642 * 179.19034 * 9 8 7 40 40 H 1.08999 * 109.47304 * 54.20548 * 11 10 9 41 41 H 1.08999 * 109.46587 * 174.20894 * 11 10 9 42 42 H 0.97000 * 119.99685 * 359.97438 * 14 12 11 43 43 H 1.08998 * 109.47297 * 299.99968 * 15 14 12 44 44 H 1.09003 * 109.46931 * 59.99800 * 15 14 12 45 45 H 0.96995 * 120.00414 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.46045 * 301.72942 * 24 10 9 47 47 H 1.08998 * 109.45058 * 181.75654 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 1 3.1301 -0.7211 1.2500 7 6 1.5285 -0.0019 2.5004 8 6 1.9940 -0.7643 3.7441 9 6 1.4840 -2.2055 3.6736 10 7 2.0015 -2.8503 2.4599 11 6 1.6464 -4.2755 2.4287 12 6 2.3509 -4.9933 3.5509 13 8 3.0777 -4.3785 4.3024 14 7 2.1742 -6.3189 3.7188 15 6 2.8594 -7.0169 4.8093 16 6 2.4951 -8.4789 4.7774 17 1 1.8208 -8.8509 4.0202 18 6 3.0225 -9.3414 5.7149 19 7 3.8431 -8.8883 6.6372 20 14 2.5714 -11.1537 5.6748 21 1 3.5398 -11.8861 4.8201 22 1 2.6124 -11.7045 7.0533 23 1 1.2032 -11.3110 5.1194 24 6 1.5288 -2.1636 1.2510 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.9257 1.0128 2.5253 35 1 0.4392 0.0327 2.4809 36 1 1.5971 -0.2811 4.6369 37 1 3.0832 -0.7653 3.7846 38 1 0.3944 -2.2044 3.6478 39 1 1.8258 -2.7551 4.5506 40 1 0.5684 -4.3840 2.5481 41 1 1.9514 -4.7050 1.4744 42 1 1.5932 -6.8107 3.1175 43 1 3.9374 -6.9081 4.6898 44 1 2.5546 -6.5876 5.7637 45 1 4.2144 -9.4952 7.2965 46 1 0.4390 -2.1626 1.2366 47 1 1.9033 -2.6828 0.3687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796576582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:48 Heat of formation + Delta-G solvation = -80.136708 kcal Electronic energy + Delta-G solvation = -22975.827606 eV Core-core repulsion = 19770.518503 eV Total energy + Delta-G solvation = -3205.309104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15673 -40.07202 -37.36840 -36.04631 -34.37261 -33.88749 -30.82083 -29.99354 -28.53567 -28.13285 -27.55027 -24.87645 -24.24440 -23.51464 -21.42126 -20.98304 -19.32234 -18.74819 -17.54745 -17.28639 -16.68763 -16.58416 -16.00950 -15.82165 -15.39597 -15.26632 -15.05454 -14.66924 -14.52800 -14.33567 -14.15063 -13.92130 -13.82122 -13.46437 -12.91741 -12.89658 -12.80285 -12.68301 -12.65663 -12.45448 -12.33164 -12.22844 -11.94217 -11.85098 -11.58804 -11.48380 -11.22912 -11.10875 -10.87074 -10.80036 -10.49929 -9.79134 -9.18569 -8.29277 -6.46082 1.42665 1.45319 1.56440 1.81460 2.28016 2.47433 3.05476 3.07754 3.74813 3.81694 3.88925 3.99897 4.13548 4.22679 4.26734 4.32770 4.38979 4.47931 4.53599 4.60302 4.68487 4.77788 4.85243 4.88446 4.92481 5.01002 5.03798 5.09393 5.11476 5.14689 5.16302 5.20683 5.24692 5.27505 5.31357 5.41872 5.46649 5.49980 5.61842 5.68245 5.71732 5.85334 6.04300 6.24239 6.65479 6.96805 7.23762 7.55215 8.83041 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038602 B = 0.002926 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.176674 B = 9567.242169 C = 9942.961776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.069 4.069 6 H 0.060 0.940 7 C -0.111 4.111 8 C -0.112 4.112 9 C 0.053 3.947 10 N -0.541 5.541 11 C 0.050 3.950 12 C 0.493 3.507 13 O -0.584 6.584 14 N -0.710 5.710 15 C 0.269 3.731 16 C -0.555 4.555 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.255 1.255 24 C 0.061 3.939 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.408 0.592 43 H -0.016 1.016 44 H -0.015 1.015 45 H 0.269 0.731 46 H 0.047 0.953 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 17.959 -16.693 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.088 4.088 6 H 0.078 0.922 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.075 4.075 10 N -0.266 5.266 11 C -0.081 4.081 12 C 0.280 3.720 13 O -0.464 6.464 14 N -0.361 5.361 15 C 0.146 3.854 16 C -0.593 4.593 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.178 1.178 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.243 0.757 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.683 18.373 -15.996 25.861 hybrid contribution -0.626 -1.299 0.495 1.525 sum -9.309 17.074 -15.500 24.868 Atomic orbital electron populations 1.21983 0.94127 1.01949 1.02069 1.20484 0.95994 0.95526 0.93904 1.21898 1.00759 0.94999 1.02152 1.21930 1.00814 1.00454 0.96900 1.21144 0.99910 0.93100 0.94607 0.92155 1.21720 1.01066 0.98949 0.93046 1.21520 1.00668 0.93710 0.99065 1.22143 0.96305 0.96071 0.92933 1.61482 1.61329 1.00435 1.03338 1.21917 0.98941 0.89449 0.97803 1.21384 0.81925 0.82300 0.86377 1.90613 1.40460 1.67122 1.48218 1.46191 1.48625 1.08231 1.33093 1.18483 0.90741 0.91563 0.84582 1.21629 1.29692 0.92534 1.15462 0.89770 1.26087 0.94323 1.05014 0.94287 1.70139 1.31913 1.37781 1.17238 0.85148 0.79375 0.77156 0.77488 1.19580 1.20981 1.17833 1.22351 0.98076 0.94869 0.91292 0.92340 0.92043 0.92590 0.93159 0.91966 0.92187 0.92362 0.91910 0.93168 0.90643 0.91036 0.90960 0.93173 0.94670 0.92703 0.89996 0.85669 0.75686 0.99766 0.99710 0.92264 0.93485 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.77 71.98 0.56 -1.20 16 2 C -0.06 -0.81 0.57 -52.18 -0.03 -0.84 16 3 C -0.14 -1.78 8.12 71.98 0.58 -1.20 16 4 C -0.14 -1.92 8.12 71.98 0.58 -1.33 16 5 C -0.07 -1.28 1.71 -10.74 -0.02 -1.29 16 6 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.11 -2.04 4.57 30.67 0.14 -1.90 16 8 C -0.11 -2.76 6.09 30.65 0.19 -2.58 16 9 C 0.05 1.57 5.11 86.32 0.44 2.01 16 10 N -0.54 -15.34 4.40 -900.91 -3.96 -19.30 16 11 C 0.05 1.39 5.45 85.55 0.47 1.86 16 12 C 0.49 20.24 7.50 87.66 0.66 20.90 16 13 O -0.58 -29.74 14.33 -3.04 -0.04 -29.78 16 14 N -0.71 -30.50 5.55 -466.79 -2.59 -33.09 16 15 C 0.27 15.07 5.43 85.63 0.46 15.53 16 16 C -0.56 -30.54 9.28 25.60 0.24 -30.30 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.13 5.46 84.66 0.46 0.59 16 19 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 20 Si 0.99 42.59 29.54 68.60 2.03 44.62 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 24 C 0.06 1.24 4.04 86.32 0.35 1.58 16 25 H 0.06 0.71 6.38 -2.39 -0.02 0.70 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.70 6.41 -2.39 -0.02 0.69 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.73 6.49 -2.39 -0.02 0.72 16 31 H 0.06 0.77 6.45 -2.39 -0.02 0.75 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.23 6.58 -2.39 -0.02 1.21 16 35 H 0.07 1.19 6.32 -2.39 -0.02 1.17 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 2.09 5.78 -2.39 -0.01 2.08 16 40 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 41 H 0.13 2.83 7.99 -2.39 -0.02 2.81 16 42 H 0.41 14.27 8.32 -92.71 -0.77 13.49 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.05 0.85 6.38 -2.39 -0.02 0.84 16 47 H 0.08 1.55 6.35 -2.39 -0.02 1.54 16 Total: -1.00 -71.75 354.69 0.97 -70.78 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.17 Total: 21.65 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.09 Total: 1.84 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -6.27 Total: -109.10 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.04 Total: -29.78 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.75 0.97 -70.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796576582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.358 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds