Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47066 * 2 1 4 4 C 1.52994 * 109.47015 * 120.00677 * 2 1 3 5 5 N 1.46502 * 109.46879 * 177.19911 * 4 2 1 6 6 C 1.46498 * 119.99945 * 275.69716 * 5 4 2 7 7 C 1.50700 * 109.47567 * 248.47879 * 6 5 4 8 8 H 1.08001 * 119.99689 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00329 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47271 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46910 * 119.99847 * 11 9 7 14 14 H 1.48501 * 109.47325 * 239.99585 * 11 9 7 15 15 C 1.34777 * 120.00312 * 95.70255 * 5 4 2 16 16 O 1.21593 * 119.99908 * 13.19418 * 15 5 4 17 17 N 1.34777 * 120.00352 * 193.20175 * 15 5 4 18 18 C 1.46505 * 119.99609 * 16.44736 * 17 15 5 19 19 C 1.46494 * 120.00115 * 196.44919 * 17 15 5 20 20 C 1.55241 * 110.46973 * 234.80479 * 19 17 15 21 21 C 1.54887 * 102.58570 * 203.39616 * 20 19 17 22 22 C 1.54259 * 104.31517 * 37.93542 * 21 20 19 23 23 C 1.53871 * 106.59921 * 336.31939 * 22 21 20 24 24 H 1.09006 * 109.46858 * 299.99719 * 1 2 3 25 25 H 1.09002 * 109.47539 * 59.99688 * 1 2 3 26 26 H 1.09004 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46355 * 240.00266 * 2 1 3 28 28 H 1.09004 * 109.47111 * 185.19438 * 3 2 1 29 29 H 1.09001 * 109.47655 * 305.19482 * 3 2 1 30 30 H 1.08999 * 109.47094 * 65.19851 * 3 2 1 31 31 H 1.09001 * 109.47755 * 57.19812 * 4 2 1 32 32 H 1.09003 * 109.47373 * 297.19259 * 4 2 1 33 33 H 1.09004 * 109.47097 * 8.48057 * 6 5 4 34 34 H 1.08997 * 109.47200 * 128.47750 * 6 5 4 35 35 H 0.96998 * 120.00333 * 180.02562 * 10 9 7 36 36 H 1.09006 * 109.47232 * 275.96509 * 18 17 15 37 37 H 1.09000 * 109.47421 * 35.96941 * 18 17 15 38 38 H 1.08999 * 109.46732 * 155.97355 * 18 17 15 39 39 H 1.08993 * 110.43554 * 357.45678 * 19 17 15 40 40 H 1.08993 * 110.89808 * 85.10111 * 20 19 17 41 41 H 1.09000 * 110.76246 * 321.62346 * 20 19 17 42 42 H 1.08995 * 110.48510 * 279.18047 * 21 20 19 43 43 H 1.09005 * 110.48169 * 156.67497 * 21 20 19 44 44 H 1.08997 * 110.03724 * 95.60842 * 22 21 20 45 45 H 1.09004 * 110.03203 * 216.98972 * 22 21 20 46 46 H 1.08998 * 110.03221 * 119.29030 * 23 22 21 47 47 H 1.09005 * 110.03058 * 240.72015 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5034 -0.7801 1.2158 6 6 4.1769 -1.8504 0.4763 7 6 4.8653 -2.7755 1.4466 8 1 4.8065 -2.5853 2.5081 9 6 5.5699 -3.8645 0.9794 10 7 5.6411 -4.0963 -0.3132 11 14 6.4225 -5.0114 2.1823 12 1 6.1906 -4.5351 3.5695 13 1 5.8736 -6.3831 2.0321 14 1 7.8806 -5.0284 1.9014 15 6 4.2302 0.1505 1.8656 16 8 3.6937 0.8895 2.6684 17 7 5.5517 0.2623 1.6254 18 6 6.1334 -0.3531 0.4298 19 6 6.4063 0.9989 2.5597 20 6 7.1942 2.1097 1.8145 21 6 8.4136 2.3385 2.7417 22 6 8.7781 0.9276 3.2476 23 6 7.5019 0.0758 3.1319 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1260 1.4439 -0.0930 29 1 1.6027 1.9825 -0.8398 30 1 1.7547 1.9287 0.9329 31 1 1.6362 -1.7335 1.2746 32 1 1.7183 -0.1794 2.1385 33 1 3.4419 -2.4112 -0.1012 34 1 4.9151 -1.4171 -0.1985 35 1 6.1365 -4.8627 -0.6420 36 1 6.3495 -1.4026 0.6299 37 1 5.4274 -0.2786 -0.3973 38 1 7.0563 0.1642 0.1675 39 1 5.8093 1.4270 3.3649 40 1 6.5982 3.0183 1.7287 41 1 7.5154 1.7630 0.8323 42 1 8.1423 2.9849 3.5763 43 1 9.2435 2.7690 2.1811 44 1 9.5685 0.5018 2.6294 45 1 9.1027 0.9759 4.2870 46 1 7.6729 -0.7633 2.4576 47 1 7.2063 -0.2893 4.1156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800909308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -13.229493 kcal Electronic energy + Delta-G solvation = -24556.276559 eV Core-core repulsion = 21353.868770 eV Total energy + Delta-G solvation = -3202.407789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89268 -37.73527 -35.80461 -34.86136 -33.08756 -32.18936 -28.42820 -28.26481 -27.29507 -26.76324 -26.12310 -24.65840 -22.75735 -20.45830 -20.21867 -19.29593 -18.57778 -17.01290 -16.13413 -15.92006 -15.19663 -15.05139 -14.63203 -14.40617 -14.07801 -13.78408 -13.40759 -13.17683 -12.80377 -12.62818 -12.27201 -12.15381 -11.99395 -11.87543 -11.66014 -11.37357 -11.11850 -10.99688 -10.95169 -10.90376 -10.85648 -10.82669 -10.55630 -10.36997 -10.33032 -10.09685 -10.07024 -9.69643 -9.39061 -9.09058 -8.45674 -7.81993 -7.26672 -6.15833 -4.19467 3.20724 3.30264 3.35461 3.54888 4.02612 4.33455 4.72514 4.92997 4.94246 5.13948 5.16159 5.29893 5.35114 5.52317 5.65868 5.72432 5.77038 5.82617 5.87909 5.90531 5.95117 6.01657 6.07960 6.09452 6.10142 6.18259 6.23359 6.30588 6.35766 6.40170 6.43484 6.50827 6.59317 6.67088 6.68629 6.78567 6.93212 7.07686 7.26077 7.35496 7.66733 7.85458 7.97636 8.19040 8.74082 8.97916 9.42810 9.56961 10.89463 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010262 B = 0.008935 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.814020 B = 3132.842836 C = 5266.791868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.139 3.861 5 N -0.616 5.616 6 C 0.197 3.803 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.720 3.280 16 O -0.623 6.623 17 N -0.616 5.616 18 C 0.070 3.930 19 C 0.162 3.838 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.140 4.140 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.263 0.737 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 9.125 0.329 9.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.192 4.192 4 C 0.014 3.986 5 N -0.350 5.350 6 C 0.077 3.923 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.424 3.576 16 O -0.505 6.505 17 N -0.351 5.351 18 C -0.072 4.072 19 C 0.056 3.944 20 C -0.174 4.174 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.179 4.179 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.830 9.345 0.605 9.402 hybrid contribution 0.565 -1.057 0.495 1.297 sum 1.394 8.289 1.101 8.477 Atomic orbital electron populations 1.21745 0.95367 1.01458 1.01304 1.21561 0.95162 0.96934 0.99796 1.21701 1.00901 0.95706 1.00864 1.21239 0.80258 0.99947 0.97125 1.47289 1.05038 1.27661 1.54991 1.20587 0.94151 0.84764 0.92759 1.21511 1.31218 1.09319 0.93702 0.92426 1.24886 0.96496 0.97327 0.95131 1.69929 1.41980 1.29107 1.12071 0.86567 0.79292 0.80836 0.81607 1.19762 1.20976 1.20862 1.15727 0.80955 0.80475 0.80482 1.90753 1.70951 1.48623 1.40189 1.46631 1.06185 1.56927 1.25356 1.22566 0.96912 1.01296 0.86409 1.21669 0.90452 0.90580 0.91650 1.22926 0.96389 0.98787 0.99256 1.22272 0.97688 0.96969 0.99004 1.22075 0.97788 0.95319 1.00693 1.22555 0.94450 0.99121 1.01755 0.92847 0.93049 0.92754 0.91219 0.93138 0.93861 0.92615 0.91398 0.90693 0.95179 0.91174 0.92706 0.87900 0.91245 0.93757 0.88590 0.91616 0.90898 0.91792 0.91939 0.91986 0.92213 0.90379 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.11 -1.85 3.14 -90.63 -0.28 -2.13 16 3 C -0.13 -2.18 8.50 37.15 0.32 -1.86 16 4 C 0.14 2.64 4.97 -4.04 -0.02 2.62 16 5 N -0.62 -13.28 2.30 -180.80 -0.42 -13.70 16 6 C 0.20 4.58 4.72 -5.19 -0.02 4.56 16 7 C -0.52 -13.30 7.04 -34.44 -0.24 -13.54 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.65 5.14 -17.82 -0.09 1.56 16 10 N -0.89 -23.69 13.29 55.43 0.74 -22.95 16 11 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.72 15.92 6.07 -86.92 -0.53 15.39 16 16 O -0.62 -14.95 15.23 5.28 0.08 -14.87 16 17 N -0.62 -12.17 2.75 -187.16 -0.51 -12.68 16 18 C 0.07 1.33 7.08 59.85 0.42 1.75 16 19 C 0.16 2.79 3.26 -66.08 -0.22 2.57 16 20 C -0.14 -1.90 6.43 -24.55 -0.16 -2.06 16 21 C -0.12 -1.44 6.82 -25.08 -0.17 -1.61 16 22 C -0.12 -1.53 6.80 -25.62 -0.17 -1.71 16 23 C -0.14 -2.25 6.43 -25.61 -0.16 -2.42 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.91 6.97 -51.93 -0.36 0.55 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 32 H 0.07 1.48 7.16 -51.93 -0.37 1.11 16 33 H 0.03 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.07 1.63 3.16 -63.71 -0.20 1.43 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.10 2.28 4.94 -51.93 -0.26 2.02 16 37 H 0.07 1.35 5.91 -51.93 -0.31 1.04 16 38 H 0.04 0.73 6.09 -51.93 -0.32 0.41 16 39 H 0.10 1.81 7.08 -51.93 -0.37 1.44 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.02 6.12 -51.93 -0.32 0.70 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.39 7.13 -51.93 -0.37 1.02 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -28.02 354.41 -9.11 -37.13 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.32 Total: 4.60 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.99 Total: 1.62 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.19 Total: -49.33 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.02 -9.11 -37.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800909308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.901 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds