Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47249 * 239.99890 * 2 1 3 5 5 C 1.50701 * 109.46986 * 59.99876 * 4 2 1 6 6 H 1.07995 * 120.00338 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99699 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99842 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47055 * 59.99959 * 9 7 5 11 11 H 1.48504 * 109.47368 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47359 * 300.00243 * 9 7 5 13 13 C 1.53007 * 109.47377 * 119.99789 * 2 1 3 14 14 N 1.46505 * 109.46736 * 300.00092 * 13 2 1 15 15 C 1.34781 * 119.99511 * 179.97438 * 14 13 2 16 16 O 1.21584 * 119.99970 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99489 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.52992 * 109.47482 * 179.97438 * 19 18 17 21 21 C 1.53778 * 113.61727 * 274.13766 * 20 19 18 22 22 C 1.53956 * 87.02468 * 220.04570 * 21 20 19 23 23 C 1.53784 * 113.61658 * 176.52792 * 20 19 18 24 24 H 1.08997 * 109.46951 * 299.99914 * 1 2 3 25 25 H 1.08993 * 109.47310 * 60.00417 * 1 2 3 26 26 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46440 * 300.00015 * 3 2 1 29 29 H 1.09000 * 109.47127 * 59.99710 * 3 2 1 30 30 H 1.09003 * 109.47122 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47425 * 299.99588 * 4 2 1 32 32 H 0.97001 * 119.99600 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47144 * 180.02562 * 13 2 1 34 34 H 1.08994 * 109.46765 * 60.00103 * 13 2 1 35 35 H 0.97003 * 120.00113 * 0.02562 * 14 13 2 36 36 H 0.96996 * 120.00772 * 359.97438 * 17 15 14 37 37 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 38 38 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 39 39 H 1.09002 * 109.47153 * 300.00008 * 19 18 17 40 40 H 1.08998 * 109.47533 * 59.99637 * 19 18 17 41 41 H 1.09000 * 112.84915 * 45.33452 * 20 19 18 42 42 H 1.08996 * 113.61184 * 334.56845 * 21 20 19 43 43 H 1.09000 * 113.61578 * 105.46835 * 21 20 19 44 44 H 1.09002 * 113.53647 * 270.81670 * 22 21 20 45 45 H 1.08996 * 113.66740 * 139.92974 * 22 21 20 46 46 H 1.08998 * 113.61407 * 254.52625 * 23 20 19 47 47 H 1.08996 * 113.61156 * 25.35491 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5509 -3.8525 9 14 1.2479 0.3984 -5.2572 10 1 1.7418 1.7989 -5.2571 11 1 1.7431 -0.3015 -6.4697 12 1 -0.2371 0.3973 -5.2573 13 6 2.0401 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4913 3.6696 16 8 2.5752 -1.4803 3.7811 17 7 1.4272 0.1438 4.7699 18 6 1.7812 -0.3566 6.1006 19 6 1.1480 0.5388 7.1673 20 6 1.5171 0.0159 8.5569 21 6 0.5714 -1.0811 9.0736 22 6 0.6714 -0.4055 10.4533 23 6 0.9981 0.8977 9.7049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2492 32 1 2.8617 -1.8823 -4.7336 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7488 1.2493 35 1 0.9937 0.7579 2.3564 36 1 0.8699 0.9327 4.6810 37 1 1.4122 -1.3758 6.2154 38 1 2.8651 -0.3476 6.2157 39 1 1.5175 1.5579 7.0523 40 1 0.0642 0.5303 7.0524 41 1 2.5729 -0.2402 8.6461 42 1 -0.4266 -1.0380 8.6376 43 1 1.0047 -2.0809 9.0435 44 1 1.4956 -0.7779 11.0617 45 1 -0.2743 -0.3731 10.9942 46 1 1.7753 1.4931 10.1839 47 1 0.1177 1.4838 9.4415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806945309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = -44.437901 kcal Electronic energy + Delta-G solvation = -22005.442808 eV Core-core repulsion = 18801.681721 eV Total energy + Delta-G solvation = -3203.761087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.91743 -39.20320 -37.23953 -35.01667 -33.53820 -32.11968 -30.81909 -27.11733 -26.48734 -26.36405 -25.96239 -24.81866 -22.81882 -21.94502 -20.67621 -19.72372 -18.68886 -17.58851 -16.40279 -16.06951 -15.98261 -15.59173 -14.94388 -14.64948 -14.51827 -14.15951 -13.87582 -13.59248 -13.04671 -12.87121 -12.80418 -12.71413 -12.62562 -12.09654 -12.03975 -11.69617 -11.44776 -11.11514 -10.98495 -10.95304 -10.85893 -10.60932 -10.56294 -10.50094 -10.36974 -10.24479 -9.97464 -9.84707 -9.17666 -9.11887 -8.91498 -8.49775 -8.34004 -5.98077 -3.99414 2.90712 3.32967 3.38398 3.39574 3.46514 4.17599 4.26836 4.33375 4.45675 4.49291 4.53784 4.84088 5.04672 5.11932 5.25968 5.37168 5.37825 5.40704 5.49810 5.53191 5.56487 5.61853 5.67491 5.76579 5.77995 5.86307 5.96300 6.15199 6.20556 6.25122 6.31628 6.44600 6.52538 6.63298 6.65159 6.84141 7.08295 7.10003 7.10119 7.18775 7.66382 7.79227 8.00598 8.23832 8.42482 8.84455 9.05180 9.63384 11.13294 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053883 B = 0.002348 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.517309 B =11923.820609 C =12120.787863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.738 5.738 15 C 0.698 3.302 16 O -0.595 6.595 17 N -0.754 5.754 18 C 0.141 3.859 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.393 0.607 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 6.417 24.815 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.023 3.977 14 N -0.393 5.393 15 C 0.398 3.602 16 O -0.473 6.473 17 N -0.410 5.410 18 C 0.016 3.984 19 C -0.159 4.159 20 C -0.126 4.126 21 C -0.177 4.177 22 C -0.182 4.182 23 C -0.174 4.174 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.477 5.352 24.762 25.727 hybrid contribution -0.795 1.141 -1.033 1.732 sum -5.272 6.493 23.729 25.160 Atomic orbital electron populations 1.21750 0.95335 1.01140 1.00107 1.20913 0.95439 0.95854 0.95078 1.21753 1.00549 0.95930 1.00109 1.19086 0.96385 0.95242 0.89424 1.21145 1.31216 1.12059 0.90536 0.92332 1.25022 0.95351 0.95115 0.99082 1.69958 1.36880 1.22992 1.23521 0.86703 0.79114 0.79739 0.82671 1.20354 1.21420 1.20358 1.21479 0.98634 0.95627 0.81914 1.45376 1.56152 1.33170 1.04597 1.16034 0.80521 0.83015 0.80616 1.90912 1.42858 1.27534 1.86043 1.45140 1.57434 1.33286 1.05156 1.21123 0.99789 0.97684 0.79773 1.21788 1.01044 0.99478 0.93577 1.22473 1.00008 0.97052 0.93107 1.23035 0.99930 0.98333 0.96360 1.22845 1.01761 0.96990 0.96581 1.22939 1.01183 0.96461 0.96861 0.95322 0.91507 0.93376 0.93372 0.91514 0.95312 0.96311 0.96307 0.92996 0.92066 0.92064 0.77224 0.77384 0.91795 0.91916 0.91195 0.91235 0.88897 0.90034 0.91356 0.90262 0.91570 0.91546 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.39 0.54 -154.50 -0.08 -1.47 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.89 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.15 2.69 4.57 -4.04 -0.02 2.67 16 14 N -0.74 -11.10 4.96 -65.22 -0.32 -11.42 16 15 C 0.70 11.12 8.57 -86.92 -0.74 10.37 16 16 O -0.60 -12.15 16.34 5.29 0.09 -12.07 16 17 N -0.75 -8.52 5.56 -65.22 -0.36 -8.88 16 18 C 0.14 1.42 5.67 -4.04 -0.02 1.40 16 19 C -0.12 -0.83 5.15 -26.74 -0.14 -0.96 16 20 C -0.11 -0.70 3.64 -89.81 -0.33 -1.02 16 21 C -0.14 -0.90 7.65 -25.83 -0.20 -1.10 16 22 C -0.14 -0.83 8.09 -25.82 -0.21 -1.04 16 23 C -0.14 -0.78 7.65 -25.91 -0.20 -0.98 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.91 6.18 -40.82 -0.25 4.65 16 36 H 0.39 3.27 8.49 -40.82 -0.35 2.92 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -31.81 369.24 -9.72 -41.53 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.59 Total: 2.49 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.81 Total: -7.65 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.05 Total: -46.10 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.81 -9.72 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806945309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.909 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds