Wall clock time and date at job start Tue Mar 31 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47026 * 2 1 4 4 C 1.52999 * 109.46948 * 119.99317 * 2 1 3 5 5 N 1.46898 * 109.47208 * 179.84248 * 4 2 1 6 6 C 1.46901 * 110.99455 * 286.24299 * 5 4 2 7 7 C 1.50700 * 109.47009 * 75.65428 * 6 5 4 8 8 H 1.08000 * 119.99952 * 5.50209 * 7 6 5 9 9 C 1.37878 * 120.00276 * 185.49985 * 7 6 5 10 10 N 1.31522 * 119.99994 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00201 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47305 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47176 * 120.00235 * 11 9 7 14 14 H 1.48505 * 109.47235 * 240.00257 * 11 9 7 15 15 C 1.46903 * 111.00264 * 162.29684 * 5 4 2 16 16 N 1.46499 * 109.46582 * 279.72645 * 15 5 4 17 17 C 1.46766 * 124.34573 * 275.35899 * 16 15 5 18 18 C 1.54661 * 105.38319 * 162.85809 * 17 16 15 19 19 C 1.53007 * 111.19243 * 267.59507 * 18 17 16 20 20 C 1.52995 * 110.82566 * 143.77912 * 18 17 16 21 21 C 1.54630 * 101.68245 * 25.76320 * 18 17 16 22 22 C 1.34411 * 124.35492 * 95.66104 * 16 15 5 23 23 O 1.21287 * 124.94294 * 0.38749 * 22 16 15 24 24 H 1.08998 * 109.47512 * 300.00624 * 1 2 3 25 25 H 1.09004 * 109.47078 * 60.00772 * 1 2 3 26 26 H 1.08998 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47252 * 239.99669 * 2 1 3 28 28 H 1.08999 * 109.47671 * 64.79643 * 3 2 1 29 29 H 1.08997 * 109.47335 * 184.80214 * 3 2 1 30 30 H 1.09007 * 109.46641 * 304.79588 * 3 2 1 31 31 H 1.09003 * 109.47156 * 59.83587 * 4 2 1 32 32 H 1.09004 * 109.47537 * 299.84139 * 4 2 1 33 33 H 1.09003 * 109.46994 * 195.64993 * 6 5 4 34 34 H 1.09001 * 109.47711 * 315.65475 * 6 5 4 35 35 H 0.96996 * 120.00101 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.46880 * 39.71777 * 15 5 4 37 37 H 1.08996 * 109.47422 * 159.72596 * 15 5 4 38 38 H 1.09001 * 110.24963 * 281.98382 * 17 16 15 39 39 H 1.09002 * 110.24947 * 43.98844 * 17 16 15 40 40 H 1.08998 * 109.46995 * 173.85800 * 19 18 17 41 41 H 1.09001 * 109.46813 * 293.86405 * 19 18 17 42 42 H 1.09001 * 109.46876 * 53.86248 * 19 18 17 43 43 H 1.09004 * 109.47145 * 306.34784 * 20 18 17 44 44 H 1.08995 * 109.47606 * 66.34506 * 20 18 17 45 45 H 1.09001 * 109.47358 * 186.34973 * 20 18 17 46 46 H 1.09003 * 110.48597 * 216.30756 * 21 18 17 47 47 H 1.09007 * 110.59315 * 93.72634 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5090 -0.7244 1.2475 6 6 4.0319 -1.6752 0.2572 7 6 3.8827 -1.0936 -1.1250 8 1 3.5264 -0.0817 -1.2496 9 6 4.2012 -1.8533 -2.2307 10 7 4.6347 -3.0857 -2.0791 11 14 4.0157 -1.1326 -3.9440 12 1 3.5134 0.2612 -3.8431 13 1 5.3341 -1.1349 -4.6274 14 1 3.0526 -1.9511 -4.7237 15 6 4.0365 -1.0163 2.5871 16 7 3.9974 0.1999 3.4029 17 6 5.0414 1.2314 3.4020 18 6 4.3860 2.4791 4.0390 19 6 3.7742 3.3884 2.9714 20 6 5.3952 3.2462 4.8956 21 6 3.2860 1.8404 4.9184 22 6 3.0037 0.5117 4.2525 23 8 2.0230 -0.1724 4.4556 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.7486 1.9310 0.9298 29 1 3.1266 1.4438 -0.0860 30 1 1.6081 1.9805 -0.8440 31 1 1.6742 -1.7479 1.2509 32 1 1.6790 -0.2056 2.1393 33 1 5.0858 -1.8670 0.4589 34 1 3.4739 -2.6094 0.3204 35 1 4.8591 -3.6200 -2.8569 36 1 3.4276 -1.7886 3.0570 37 1 5.0657 -1.3653 2.5042 38 1 5.8946 0.9051 3.9968 39 1 5.3542 1.4508 2.3812 40 1 3.2277 4.1986 3.4540 41 1 4.5676 3.8044 2.3504 42 1 3.0914 2.8097 2.3491 43 1 5.8468 2.5681 5.6198 44 1 6.1722 3.6637 4.2553 45 1 4.8857 4.0532 5.4222 46 1 2.3913 2.4630 4.9222 47 1 3.6482 1.6883 5.9352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808143080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:05 Heat of formation + Delta-G solvation = -40.702674 kcal Electronic energy + Delta-G solvation = -24392.791414 eV Core-core repulsion = 21189.192298 eV Total energy + Delta-G solvation = -3203.599115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45180 -37.35281 -36.78134 -34.33162 -33.04889 -32.10576 -28.78451 -27.45549 -27.41769 -26.38805 -26.31627 -25.18383 -23.24466 -20.99720 -19.59971 -19.16243 -18.98346 -16.68227 -16.21231 -15.81295 -15.21105 -14.85780 -14.58221 -14.29943 -13.95192 -13.88826 -13.66819 -13.36399 -12.93841 -12.83423 -12.57885 -12.39979 -12.16497 -11.97570 -11.79564 -11.65899 -11.52949 -11.37921 -11.14965 -11.04266 -10.89690 -10.74243 -10.66746 -10.49769 -10.15193 -10.11176 -9.91682 -9.51423 -9.42085 -9.04215 -8.46373 -8.38457 -7.29882 -6.03830 -4.02034 2.85073 3.29137 3.37062 3.38007 3.42205 4.33412 4.41377 4.46230 4.68411 4.94293 4.98411 5.19893 5.29618 5.47107 5.51760 5.56700 5.63360 5.71743 5.73409 5.75493 5.80972 5.82526 5.89748 5.94973 6.01938 6.05777 6.09503 6.21328 6.28358 6.36597 6.46989 6.52584 6.63700 6.75486 6.78626 6.87890 7.14378 7.21592 7.33909 7.47840 7.50906 7.85326 8.07984 8.18116 8.45075 8.56924 9.04621 9.59263 11.06446 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.005363 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.729563 B = 5219.383146 C = 5403.553221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.123 4.123 4 C 0.080 3.920 5 N -0.546 5.546 6 C 0.195 3.805 7 C -0.502 4.502 8 H 0.080 0.920 9 C 0.054 3.946 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.286 3.714 16 N -0.598 5.598 17 C 0.113 3.887 18 C -0.077 4.077 19 C -0.139 4.139 20 C -0.134 4.134 21 C -0.148 4.148 22 C 0.516 3.484 23 O -0.542 6.542 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.116 0.884 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.023 0.977 34 H -0.001 1.001 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 11.692 11.591 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.181 4.181 4 C -0.048 4.048 5 N -0.272 5.272 6 C 0.070 3.930 7 C -0.541 4.541 8 H 0.098 0.902 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.212 1.212 15 C 0.075 3.925 16 N -0.332 5.332 17 C -0.010 4.010 18 C -0.077 4.077 19 C -0.196 4.196 20 C -0.192 4.192 21 C -0.188 4.188 22 C 0.303 3.697 23 O -0.420 6.420 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.278 11.549 11.405 16.233 hybrid contribution -0.280 -0.577 -0.806 1.030 sum -0.002 10.972 10.599 15.255 Atomic orbital electron populations 1.21828 0.97341 1.00693 1.00247 1.21546 0.92843 0.96977 1.01428 1.21622 1.02448 0.95513 0.98468 1.21959 0.87577 0.97787 0.97494 1.61843 1.07421 1.53881 1.04103 1.19767 0.94565 0.88958 0.89676 1.21421 1.42697 1.00314 0.89628 0.90249 1.25002 0.95632 0.94869 0.99216 1.69968 1.45320 1.08481 1.30032 0.86546 0.77675 0.79371 0.84536 1.19504 1.21138 1.21171 1.21786 1.00371 0.83321 0.87062 1.48433 1.21465 1.22656 1.40644 1.22211 0.90161 0.86327 1.02300 1.21553 0.95306 0.95041 0.95807 1.21839 1.01205 0.98702 0.97830 1.21774 0.98253 0.99946 0.99210 1.22499 1.00640 0.95591 1.00053 1.20822 0.82035 0.87307 0.79504 1.90700 1.29106 1.56547 1.65645 0.94073 0.93435 0.93477 0.86623 0.94991 0.91081 0.94874 0.96132 0.92515 0.95878 0.98271 0.93060 0.92984 0.89770 0.91564 0.89504 0.92575 0.91961 0.91454 0.92341 0.91945 0.92166 0.88549 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 37.16 0.34 -2.14 16 2 C -0.11 -2.18 2.40 -90.62 -0.22 -2.39 16 3 C -0.12 -2.25 8.41 37.16 0.31 -1.94 16 4 C 0.08 1.65 4.28 -3.83 -0.02 1.64 16 5 N -0.55 -11.29 3.90 -239.98 -0.94 -12.22 16 6 C 0.20 4.81 4.76 -4.98 -0.02 4.78 16 7 C -0.50 -13.13 6.91 -34.44 -0.24 -13.36 16 8 H 0.08 2.03 4.52 -52.49 -0.24 1.80 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 11 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.29 5.19 5.77 -63.31 -0.37 4.83 16 16 N -0.60 -9.30 3.11 -175.80 -0.55 -9.85 16 17 C 0.11 1.38 6.47 -3.02 -0.02 1.36 16 18 C -0.08 -0.77 1.01 -152.78 -0.15 -0.92 16 19 C -0.14 -1.45 8.51 37.16 0.32 -1.13 16 20 C -0.13 -1.00 8.49 37.15 0.32 -0.68 16 21 C -0.15 -1.68 5.97 -26.74 -0.16 -1.84 16 22 C 0.52 8.31 7.27 -10.87 -0.08 8.24 16 23 O -0.54 -10.88 16.30 5.55 0.09 -10.79 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.12 2.67 4.90 -51.93 -0.25 2.42 16 28 H 0.03 0.54 7.17 -51.93 -0.37 0.17 16 29 H 0.07 1.41 6.69 -51.93 -0.35 1.06 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.46 7.78 -51.93 -0.40 0.05 16 32 H 0.06 1.18 5.80 -51.93 -0.30 0.88 16 33 H 0.02 0.60 7.55 -51.93 -0.39 0.20 16 34 H 0.00 -0.02 7.76 -51.93 -0.40 -0.42 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 36 H 0.05 1.01 7.59 -51.93 -0.39 0.62 16 37 H 0.08 1.45 7.51 -51.93 -0.39 1.06 16 38 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 39 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.88 7.17 -51.93 -0.37 0.51 16 43 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 1.05 7.91 -51.93 -0.41 0.64 16 47 H 0.10 0.95 7.90 -51.92 -0.41 0.54 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -29.81 359.88 -8.78 -38.59 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.44 Total: 0.16 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.21 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.75 Total: -47.20 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.81 -8.78 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808143080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.108 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds