Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.52995 * 109.47341 * 119.99884 * 2 1 3 5 5 N 1.46902 * 109.47036 * 61.88944 * 4 2 1 6 6 C 1.46906 * 110.99967 * 69.50087 * 5 4 2 7 7 C 1.50700 * 109.46972 * 280.54809 * 6 5 4 8 8 H 1.08005 * 119.99920 * 0.28164 * 7 6 5 9 9 C 1.37875 * 120.00382 * 180.28115 * 7 6 5 10 10 N 1.31523 * 119.99565 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00417 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46842 * 90.00216 * 11 9 7 13 13 H 1.48494 * 109.47028 * 210.00026 * 11 9 7 14 14 H 1.48503 * 109.47110 * 330.00306 * 11 9 7 15 15 C 1.46899 * 111.00267 * 193.45150 * 5 4 2 16 16 N 1.46503 * 109.46872 * 86.11762 * 15 5 4 17 17 C 1.34418 * 124.34679 * 69.54142 * 16 15 5 18 18 O 1.21275 * 124.94566 * 0.38296 * 17 16 15 19 19 C 1.51287 * 110.11222 * 180.40501 * 17 16 15 20 20 C 1.54630 * 104.19466 * 16.25335 * 19 17 16 21 21 C 1.46765 * 124.34764 * 249.23945 * 16 15 5 22 22 C 1.53003 * 110.24245 * 281.98449 * 21 16 15 23 23 C 1.52996 * 110.24501 * 43.98438 * 21 16 15 24 24 H 1.09002 * 109.46761 * 299.99935 * 1 2 3 25 25 H 1.09002 * 109.47167 * 60.00000 * 1 2 3 26 26 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47449 * 240.00167 * 2 1 3 28 28 H 1.08999 * 109.47316 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47084 * 300.00051 * 3 2 1 30 30 H 1.09002 * 109.47234 * 60.00355 * 3 2 1 31 31 H 1.09001 * 109.47164 * 301.89190 * 4 2 1 32 32 H 1.08998 * 109.47638 * 181.88932 * 4 2 1 33 33 H 1.09002 * 109.47306 * 40.54508 * 6 5 4 34 34 H 1.08993 * 109.47394 * 160.54790 * 6 5 4 35 35 H 0.96997 * 119.99468 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47306 * 206.11691 * 15 5 4 37 37 H 1.09003 * 109.47081 * 326.12055 * 15 5 4 38 38 H 1.09000 * 110.48412 * 134.92986 * 19 17 16 39 39 H 1.08998 * 110.48826 * 257.57035 * 19 17 16 40 40 H 1.08995 * 110.97330 * 93.31980 * 20 19 17 41 41 H 1.08999 * 110.96639 * 217.04683 * 20 19 17 42 42 H 1.08993 * 109.47261 * 60.00267 * 22 21 16 43 43 H 1.09005 * 109.46718 * 179.97438 * 22 21 16 44 44 H 1.09000 * 109.47337 * 299.99505 * 22 21 16 45 45 H 1.08996 * 109.47150 * 59.53044 * 23 21 16 46 46 H 1.09007 * 109.47029 * 179.52949 * 23 21 16 47 47 H 1.08999 * 109.47293 * 299.52558 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5880 -2.1188 1.2266 6 6 2.2723 -2.8764 0.1702 7 6 1.6267 -2.5800 -1.1589 8 1 0.7946 -1.8937 -1.2140 9 6 2.0983 -3.1850 -2.3046 10 7 3.1113 -4.0212 -2.2374 11 14 1.2977 -2.8183 -3.9520 12 1 1.9749 -1.6577 -4.5840 13 1 1.4198 -4.0046 -4.8367 14 1 -0.1382 -2.5010 -3.7448 15 6 1.7774 -2.7546 2.5372 16 7 0.6131 -2.4839 3.3841 17 6 -0.6095 -3.0046 3.1816 18 8 -0.9007 -3.7644 2.2824 19 6 -1.5696 -2.5042 4.2383 20 6 -0.8493 -1.2843 4.8580 21 6 0.6332 -1.6144 4.5663 22 6 1.2595 -2.3491 5.7533 23 6 1.4106 -0.3312 4.2665 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6493 -0.2273 2.1389 32 1 3.1295 -0.6920 1.2663 33 1 3.3224 -2.5860 0.1368 34 1 2.1968 -3.9430 0.3810 35 1 3.4428 -4.4470 -3.0433 36 1 1.8890 -3.8310 2.4062 37 1 2.6727 -2.3515 3.0107 38 1 -2.5125 -2.2002 3.7838 39 1 -1.7392 -3.2715 4.9937 40 1 -1.1518 -0.3606 4.3647 41 1 -1.0304 -1.2283 5.9314 42 1 2.2812 -2.6363 5.5047 43 1 1.2685 -1.6924 6.6233 44 1 0.6754 -3.2417 5.9774 45 1 0.9379 0.1946 3.4370 46 1 1.4105 0.3083 5.1493 47 1 2.4372 -0.5822 3.9999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808143420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = -26.771879 kcal Electronic energy + Delta-G solvation = -24683.104864 eV Core-core repulsion = 21480.109833 eV Total energy + Delta-G solvation = -3202.995031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43563 -37.36032 -36.60740 -33.85001 -32.63668 -31.38154 -31.11711 -27.80051 -27.04982 -26.38705 -25.77072 -24.16780 -23.45920 -21.01886 -20.61248 -19.09519 -18.40811 -16.50993 -16.05500 -15.81736 -15.28908 -14.82993 -14.56436 -14.11247 -14.01799 -13.63519 -13.41358 -13.33075 -12.95820 -12.85647 -12.53118 -12.33058 -12.19887 -12.07742 -11.88671 -11.79182 -11.60417 -11.33845 -11.19377 -10.93697 -10.81425 -10.70982 -10.60903 -10.35363 -10.15533 -10.03241 -9.92809 -9.33828 -9.22511 -8.99332 -8.38463 -8.28116 -7.22019 -5.93362 -3.90178 3.10834 3.37264 3.40812 3.44059 3.49998 4.39548 4.49303 4.52787 4.71079 4.97717 5.04138 5.14188 5.33929 5.39780 5.43169 5.48669 5.59637 5.62440 5.65519 5.72022 5.73936 5.77515 5.88113 5.92668 5.98879 6.02857 6.07782 6.15464 6.20758 6.28621 6.38750 6.46010 6.55939 6.72084 6.83598 6.98845 7.21572 7.30317 7.34559 7.50551 7.66917 7.95828 8.19963 8.29800 8.60505 8.78178 9.15544 9.70286 11.17233 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.005918 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.157300 B = 4730.162783 C = 5189.045329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.063 3.937 5 N -0.539 5.539 6 C 0.200 3.800 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.052 3.948 10 N -0.901 5.901 11 Si 0.891 3.109 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.294 3.706 16 N -0.601 5.601 17 C 0.520 3.480 18 O -0.512 6.512 19 C -0.157 4.157 20 C -0.120 4.120 21 C 0.153 3.847 22 C -0.152 4.152 23 C -0.158 4.158 24 H 0.029 0.971 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.017 0.983 33 H -0.006 1.006 34 H 0.027 0.973 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 8.744 16.728 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.128 4.128 3 C -0.200 4.200 4 C -0.065 4.065 5 N -0.264 5.264 6 C 0.075 3.925 7 C -0.535 4.535 8 H 0.097 0.903 9 C -0.148 4.148 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.197 1.197 15 C 0.083 3.917 16 N -0.338 5.338 17 C 0.306 3.694 18 O -0.385 6.385 19 C -0.197 4.197 20 C -0.158 4.158 21 C 0.067 3.933 22 C -0.211 4.211 23 C -0.216 4.216 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.012 0.988 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.209 8.170 15.954 18.412 hybrid contribution 0.613 0.185 -0.746 0.983 sum -3.596 8.355 15.208 17.721 Atomic orbital electron populations 1.21641 0.95716 1.02686 0.98355 1.21504 0.96036 0.93796 1.01450 1.21832 1.00257 0.97608 1.00314 1.22353 0.95934 0.89912 0.98309 1.61662 1.59754 1.01823 1.03194 1.19735 0.91480 0.92778 0.88484 1.21435 1.16059 1.25479 0.90535 0.90337 1.24992 0.95309 0.95359 0.99164 1.69963 1.25856 1.29764 1.28563 0.86592 0.80024 0.77578 0.83878 1.20865 1.21406 1.19721 1.21683 0.84628 0.98731 0.86696 1.48642 1.10795 1.47449 1.26880 1.20625 0.83320 0.80515 0.84987 1.90771 1.79200 1.35105 1.33452 1.22362 0.99659 0.98818 0.98893 1.22689 0.93205 0.98349 1.01586 1.20997 0.95798 0.90529 0.85993 1.22149 1.01327 1.00579 0.97018 1.22369 1.00666 0.96368 1.02150 0.95238 0.94754 0.90543 0.86678 0.93549 0.93358 0.94166 0.91624 0.96522 0.98838 0.95519 0.93151 0.90417 0.93550 0.88612 0.88661 0.90068 0.89807 0.92189 0.91646 0.92231 0.90745 0.91653 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.28 37.16 0.31 -2.09 16 2 C -0.11 -2.10 2.38 -90.62 -0.22 -2.32 16 3 C -0.14 -2.23 9.19 37.16 0.34 -1.89 16 4 C 0.06 1.17 4.04 -3.83 -0.02 1.15 16 5 N -0.54 -11.45 3.84 -239.98 -0.92 -12.37 16 6 C 0.20 5.19 4.74 -4.97 -0.02 5.17 16 7 C -0.50 -13.84 6.91 -34.44 -0.24 -14.07 16 8 H 0.08 2.16 4.32 -52.48 -0.23 1.93 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 11 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.29 5.36 5.33 -63.31 -0.34 5.02 16 16 N -0.60 -9.38 2.67 -160.99 -0.43 -9.81 16 17 C 0.52 9.10 7.99 -10.86 -0.09 9.01 16 18 O -0.51 -11.81 17.74 5.56 0.10 -11.71 16 19 C -0.16 -1.85 6.85 -26.74 -0.18 -2.04 16 20 C -0.12 -1.13 6.21 -25.00 -0.16 -1.28 16 21 C 0.15 1.69 0.97 -130.80 -0.13 1.56 16 22 C -0.15 -1.39 8.80 37.16 0.33 -1.07 16 23 C -0.16 -1.64 6.88 37.16 0.26 -1.39 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.71 6.48 -51.93 -0.34 1.38 16 27 H 0.12 2.66 5.06 -51.93 -0.26 2.40 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.06 3.52 -51.93 -0.18 0.87 16 32 H 0.02 0.32 7.84 -51.93 -0.41 -0.09 16 33 H -0.01 -0.17 7.75 -51.93 -0.40 -0.57 16 34 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.08 1.57 7.35 -51.93 -0.38 1.19 16 37 H 0.05 0.75 6.62 -51.93 -0.34 0.40 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 41 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.89 6.06 -51.93 -0.31 0.57 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.69 6.63 -51.93 -0.34 0.35 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -32.53 355.17 -8.63 -41.16 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.19 Total: -0.64 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.25 Total: -2.84 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.62 Total: -48.53 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.10 Total: -11.71 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.53 -8.63 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808143420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.387 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds