Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99800 * 2 1 4 4 C 1.46902 * 111.00004 * 123.95205 * 2 1 3 5 5 C 1.50702 * 112.90841 * 312.93621 * 4 2 1 6 6 O 1.21284 * 119.99830 * 122.04454 * 5 4 2 7 7 N 1.34771 * 119.99757 * 302.04977 * 5 4 2 8 8 C 1.46506 * 119.99781 * 184.40126 * 7 5 4 9 9 C 1.52997 * 109.46960 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47454 * 299.99755 * 9 8 7 11 11 C 1.52996 * 109.47308 * 60.00227 * 9 8 7 12 12 C 1.53004 * 109.46895 * 179.97438 * 9 8 7 13 13 C 1.50696 * 109.47041 * 180.02562 * 12 9 8 14 14 H 1.08001 * 120.00382 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99895 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00165 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99759 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47056 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46974 * 119.99696 * 17 15 13 20 20 H 1.48500 * 109.46712 * 239.99640 * 17 15 13 21 21 C 1.53777 * 113.61532 * 181.68443 * 4 2 1 22 22 C 1.53779 * 87.08101 * 220.02337 * 21 4 2 23 23 C 1.53775 * 87.17594 * 25.38714 * 22 21 4 24 24 H 1.09003 * 109.47355 * 293.98457 * 1 2 3 25 25 H 1.08998 * 109.47248 * 53.98637 * 1 2 3 26 26 H 1.08996 * 109.46993 * 173.98734 * 1 2 3 27 27 H 1.09009 * 109.47020 * 183.95124 * 3 2 1 28 28 H 1.08996 * 109.47465 * 303.95166 * 3 2 1 29 29 H 1.09007 * 109.47338 * 63.95963 * 3 2 1 30 30 H 0.96993 * 120.00707 * 4.39827 * 7 5 4 31 31 H 1.08994 * 109.46967 * 299.99932 * 8 7 5 32 32 H 1.09003 * 109.46875 * 60.00022 * 8 7 5 33 33 H 1.08999 * 109.46696 * 60.00079 * 10 9 8 34 34 H 1.08992 * 109.47290 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.46738 * 300.00279 * 10 9 8 36 36 H 1.09001 * 109.47601 * 59.99698 * 11 9 8 37 37 H 1.08997 * 109.47388 * 180.02562 * 11 9 8 38 38 H 1.09005 * 109.47035 * 299.99551 * 11 9 8 39 39 H 1.09001 * 109.46956 * 299.99653 * 12 9 8 40 40 H 1.08994 * 109.47108 * 60.00089 * 12 9 8 41 41 H 0.97002 * 120.00157 * 180.02562 * 16 15 13 42 42 H 1.08999 * 113.61564 * 105.47195 * 21 4 2 43 43 H 1.09009 * 113.69219 * 334.57578 * 21 4 2 44 44 H 1.09002 * 113.62063 * 139.98599 * 22 21 4 45 45 H 1.09005 * 113.61303 * 270.79719 * 22 21 4 46 46 H 1.09003 * 113.60980 * 89.15860 * 23 22 21 47 47 H 1.08993 * 113.61776 * 220.06014 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.3229 -0.4181 2.4406 6 8 0.7657 -1.2814 3.0848 7 7 1.3406 0.8525 2.8898 8 6 0.7717 1.1737 4.2011 9 6 0.9195 2.6730 4.4677 10 6 2.4020 3.0508 4.4486 11 6 0.1788 3.4591 3.3841 12 6 0.3248 3.0086 5.8369 13 6 0.4697 4.4855 6.0992 14 1 0.9394 5.1212 5.3632 15 6 0.0036 5.0251 7.2793 16 7 -0.5679 4.2510 8.1758 17 14 0.1840 6.8557 7.6047 18 1 0.8568 7.5001 6.4483 19 1 -1.1593 7.4592 7.7956 20 1 0.9983 7.0629 8.8292 21 6 3.5311 -0.7709 1.2191 22 6 3.4265 -2.2514 1.6217 23 6 2.0821 -2.2806 0.8757 24 1 -0.3634 0.4177 0.9389 25 1 -0.3633 0.6042 -0.8312 26 1 -0.3633 -1.0220 -0.1076 27 1 3.0828 1.3432 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9234 30 1 1.7299 1.5542 2.3451 31 1 -0.2843 0.9042 4.2149 32 1 1.2997 0.6140 4.9732 33 1 2.8252 2.8118 3.4729 34 1 2.5072 4.1188 4.6389 35 1 2.9296 2.4908 5.2206 36 1 -0.8774 3.1900 3.3977 37 1 0.2844 4.5273 3.5737 38 1 0.6021 3.2201 2.4084 39 1 -0.7315 2.7396 5.8501 40 1 0.8520 2.4486 6.6091 41 1 -0.8961 4.6307 9.0059 42 1 3.9286 -0.1311 2.0070 43 1 4.0212 -0.6134 0.2583 44 1 4.1912 -2.8823 1.1686 45 1 3.3328 -2.4060 2.6967 46 1 2.1741 -2.5366 -0.1798 47 1 1.3116 -2.8578 1.3867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813703693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -19.069110 kcal Electronic energy + Delta-G solvation = -23970.883927 eV Core-core repulsion = 20768.222913 eV Total energy + Delta-G solvation = -3202.661014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06420 -38.12916 -36.88438 -35.52354 -33.54023 -32.08537 -28.13713 -27.46483 -26.88833 -26.59013 -25.86684 -25.40053 -23.24385 -22.31787 -21.26393 -19.53285 -17.95773 -16.95318 -16.49734 -16.19752 -15.76131 -14.99909 -14.89717 -14.68120 -14.52371 -14.13887 -13.78764 -13.44184 -13.20361 -12.87686 -12.68022 -12.40983 -12.36231 -12.11762 -12.09834 -11.86477 -11.79351 -11.22087 -11.07336 -11.04103 -10.87442 -10.81983 -10.70097 -10.48152 -10.41117 -10.28939 -10.01359 -9.93699 -9.26302 -8.96818 -8.78940 -8.51664 -8.39739 -6.03410 -4.04994 2.63644 3.27543 3.28664 3.35906 3.38169 3.75850 4.25622 4.42035 4.45540 4.61288 4.71074 4.89198 5.11278 5.22777 5.32084 5.33779 5.43309 5.45766 5.55510 5.56765 5.61245 5.63329 5.72372 5.74227 5.78627 5.95223 6.00443 6.09129 6.16438 6.17327 6.22682 6.31807 6.49833 6.56146 6.66714 6.70936 6.75426 6.99398 7.00683 7.06712 7.59672 7.67683 7.71476 7.94926 8.32643 8.37524 8.99861 9.58443 11.08052 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.003910 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.868217 B = 7158.689976 C = 7382.174709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.514 5.514 3 C 0.008 3.992 4 C 0.055 3.945 5 C 0.506 3.494 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.124 3.876 9 C -0.072 4.072 10 C -0.127 4.127 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.512 4.512 14 H 0.060 0.940 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.121 4.121 22 C -0.141 4.141 23 C -0.104 4.104 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -8.191 -17.290 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.238 5.238 3 C -0.140 4.140 4 C -0.038 4.038 5 C 0.289 3.711 6 O -0.413 6.413 7 N -0.378 5.378 8 C 0.001 3.999 9 C -0.073 4.073 10 C -0.184 4.184 11 C -0.184 4.184 12 C -0.001 4.001 13 C -0.550 4.550 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.159 4.159 22 C -0.179 4.179 23 C -0.143 4.143 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.238 0.762 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.810 -9.011 -17.060 20.460 hybrid contribution -0.187 1.885 0.882 2.089 sum 6.622 -7.126 -16.177 18.877 Atomic orbital electron populations 1.22487 0.86820 1.02888 1.01133 1.62498 1.08522 1.13756 1.38980 1.22697 1.01464 0.88849 1.00995 1.22950 0.96347 0.97486 0.87065 1.20827 0.80390 0.82840 0.87032 1.90677 1.43991 1.48039 1.58634 1.46800 1.61095 1.08800 1.21087 1.21666 0.98357 0.97076 0.82754 1.20904 0.96036 0.90599 0.99718 1.21760 0.95171 1.02869 0.98590 1.21770 0.99464 1.01769 0.95359 1.19088 0.95836 0.96811 0.88365 1.21208 1.38296 0.93143 1.02342 0.92215 1.25015 0.95417 0.97681 0.96342 1.69973 1.39950 1.34979 1.08416 0.86593 0.77742 0.85808 0.78189 1.19792 1.21100 1.21095 1.23039 0.92338 0.97873 1.02638 1.22764 0.97871 0.96115 1.01136 1.22852 0.98017 0.92151 1.01252 0.94761 0.90901 0.90948 0.90580 0.90530 0.95038 0.76228 0.91857 0.91834 0.95528 0.91284 0.93274 0.93338 0.91261 0.95632 0.96353 0.96323 0.93058 0.91094 0.88322 0.90692 0.89865 0.88728 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.21 60.07 0.55 0.72 16 2 N -0.51 -5.47 4.95 -235.69 -1.17 -6.64 16 3 C 0.01 0.08 9.05 60.06 0.54 0.62 16 4 C 0.05 0.65 0.61 -131.85 -0.08 0.57 16 5 C 0.51 7.78 4.90 -10.99 -0.05 7.73 16 6 O -0.54 -10.24 15.89 5.55 0.09 -10.15 16 7 N -0.72 -10.88 4.67 -60.29 -0.28 -11.16 16 8 C 0.12 2.24 4.57 -4.04 -0.02 2.22 16 9 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 10 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 11 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 12 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 13 C -0.51 -13.50 7.65 -34.44 -0.26 -13.77 16 14 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.12 -1.20 6.16 -25.92 -0.16 -1.36 16 22 C -0.14 -1.43 7.80 -25.92 -0.20 -1.63 16 23 C -0.10 -1.15 7.28 -25.83 -0.19 -1.34 16 24 H 0.03 0.45 6.79 -51.93 -0.35 0.09 16 25 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.61 6.95 -51.92 -0.36 0.25 16 28 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.03 0.33 4.47 -51.93 -0.23 0.09 16 30 H 0.40 5.30 2.79 -40.82 -0.11 5.19 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 34 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 38 H 0.02 0.37 6.55 -51.93 -0.34 0.03 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.10 0.82 7.80 -51.92 -0.40 0.41 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.03 7.35 -51.93 -0.38 0.65 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -30.22 355.49 -8.00 -38.23 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.15 Total: 3.17 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 0.44 Total: -9.28 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.71 Total: -43.37 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.22 -8.00 -38.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813703693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.157 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds