Wall clock time and date at job start Tue Mar 31 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 C 1.52998 * 109.47251 * 240.00279 * 2 1 3 5 5 N 1.46901 * 109.46996 * 119.99951 * 2 1 3 6 6 C 1.46895 * 111.00028 * 60.00098 * 5 2 1 7 7 C 1.52999 * 109.47441 * 179.97438 * 6 5 2 8 8 C 1.50691 * 109.47549 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00116 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00378 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62797 * 359.97438 * 10 8 7 12 12 C 1.53194 * 108.77933 * 233.61094 * 11 10 8 13 13 C 1.53039 * 109.31352 * 305.37066 * 12 11 10 14 14 C 1.53036 * 109.53822 * 61.35882 * 13 12 11 15 15 H 1.08998 * 109.49783 * 58.59132 * 14 13 12 16 16 C 1.50710 * 109.49741 * 178.65236 * 14 13 12 17 17 H 1.07996 * 119.99643 * 35.12334 * 16 14 13 18 18 C 1.37875 * 120.00082 * 215.12694 * 16 14 13 19 19 N 1.31516 * 120.00081 * 184.98615 * 18 16 14 20 20 Si 1.86800 * 119.99906 * 4.98156 * 18 16 14 21 21 H 1.48504 * 109.47179 * 84.79390 * 20 18 16 22 22 H 1.48504 * 109.47032 * 204.79189 * 20 18 16 23 23 H 1.48501 * 109.47490 * 324.79335 * 20 18 16 24 24 C 1.46925 * 120.63311 * 180.02562 * 10 8 7 25 25 H 1.09000 * 109.47169 * 299.99663 * 1 2 3 26 26 H 1.08992 * 109.46932 * 59.99898 * 1 2 3 27 27 H 1.08995 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46863 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47226 * 299.99999 * 3 2 1 30 30 H 1.09000 * 109.46979 * 60.00220 * 3 2 1 31 31 H 1.09005 * 109.46649 * 300.00082 * 4 2 1 32 32 H 1.09001 * 109.46881 * 59.99364 * 4 2 1 33 33 H 1.08997 * 109.47239 * 179.97438 * 4 2 1 34 34 H 1.00902 * 111.00153 * 296.04679 * 5 2 1 35 35 H 1.09009 * 109.47032 * 59.99580 * 6 5 2 36 36 H 1.08998 * 109.47502 * 300.00271 * 6 5 2 37 37 H 1.08996 * 109.46813 * 60.00003 * 7 6 5 38 38 H 1.09005 * 109.46972 * 300.00631 * 7 6 5 39 39 H 1.09009 * 109.58452 * 113.82538 * 11 10 8 40 40 H 1.08998 * 109.58489 * 353.40413 * 11 10 8 41 41 H 1.08999 * 109.49787 * 185.41427 * 12 11 10 42 42 H 1.08997 * 109.49158 * 65.31585 * 12 11 10 43 43 H 1.09009 * 109.45370 * 301.34300 * 13 12 11 44 44 H 1.08993 * 109.46020 * 181.38329 * 13 12 11 45 45 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.58707 * 6.59644 * 24 10 8 47 47 H 1.09006 * 109.58572 * 246.17314 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0197 -0.6925 1.1995 6 6 1.5487 -2.0835 1.2334 7 6 2.0783 -2.7707 2.4936 8 6 1.5956 -4.1978 2.5282 9 8 0.8972 -4.6236 1.6327 10 7 1.9400 -5.0011 3.5541 11 6 2.7859 -4.4999 4.6459 12 6 3.9853 -5.4384 4.8112 13 6 3.4837 -6.8704 5.0113 14 6 2.6910 -7.3119 3.7789 15 1 3.3266 -7.2486 2.8956 16 6 2.2257 -8.7335 3.9629 17 1 1.9419 -9.0861 4.9434 18 6 2.1622 -9.5838 2.8794 19 7 1.6642 -10.7928 3.0205 20 14 2.7835 -9.0185 1.2109 21 1 4.2491 -9.2430 1.1263 22 1 2.1019 -9.7909 0.1412 23 1 2.4936 -7.5723 1.0386 24 6 1.4777 -6.3949 3.6015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2073 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 1.7503 -0.1990 2.0373 35 1 1.9122 -2.6118 0.3519 36 1 0.4589 -2.0980 1.2419 37 1 1.7151 -2.2425 3.3752 38 1 3.1682 -2.7562 2.4847 39 1 2.2109 -4.4752 5.5718 40 1 3.1373 -3.4967 4.4048 41 1 4.5694 -5.1329 5.6793 42 1 4.6086 -5.3927 3.9182 43 1 2.8403 -6.9102 5.8903 44 1 4.3345 -7.5366 5.1537 45 1 1.6192 -11.3908 2.2582 46 1 0.9660 -6.6420 2.6712 47 1 0.7957 -6.5253 4.4418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824746889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:15 Heat of formation + Delta-G solvation = -56.754740 kcal Electronic energy + Delta-G solvation = -23172.483277 eV Core-core repulsion = 19968.188091 eV Total energy + Delta-G solvation = -3204.295185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.81229 -38.49674 -36.91875 -33.57991 -33.08675 -31.85335 -30.58096 -28.96865 -27.66312 -27.50688 -25.21964 -24.87413 -22.48336 -21.84907 -19.67168 -19.44202 -18.38749 -17.01373 -16.62925 -16.11571 -15.69041 -14.98286 -14.93264 -14.54383 -14.29135 -13.96381 -13.81515 -13.61045 -13.17842 -12.86568 -12.73899 -12.51319 -12.38877 -12.27515 -12.13065 -11.98003 -11.90286 -11.66449 -11.36058 -11.18896 -11.02747 -10.99934 -10.78309 -10.72247 -10.53255 -10.05047 -9.70741 -9.60825 -9.26485 -9.05882 -8.57799 -8.56198 -8.02558 -6.11228 -4.12108 3.02504 3.31308 3.40147 3.41835 3.50227 4.01254 4.43379 4.59452 4.69677 4.85014 4.94684 4.98803 5.12878 5.20783 5.22163 5.31070 5.37021 5.39677 5.51785 5.53531 5.55817 5.58117 5.65816 5.69480 5.80882 5.85019 5.88902 6.00691 6.02979 6.13023 6.13562 6.16624 6.30184 6.44205 6.62516 6.68891 6.80709 6.88074 6.94621 7.22730 7.27527 7.37078 7.73296 7.93606 8.47208 8.62707 8.93877 9.52382 11.01306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.003996 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.636846 B = 7005.896267 C = 7712.385255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.143 4.143 5 N -0.680 5.680 6 C 0.068 3.932 7 C -0.137 4.137 8 C 0.507 3.493 9 O -0.550 6.550 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.138 4.138 13 C -0.105 4.105 14 C 0.006 3.994 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.075 0.925 18 C 0.076 3.924 19 N -0.896 5.896 20 Si 0.872 3.128 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.259 1.259 24 C 0.114 3.886 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.337 0.663 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.265 0.735 46 H 0.081 0.919 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 23.240 -1.540 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.014 3.986 3 C -0.195 4.195 4 C -0.200 4.200 5 N -0.311 5.311 6 C -0.061 4.061 7 C -0.177 4.177 8 C 0.294 3.706 9 O -0.428 6.428 10 N -0.342 5.342 11 C -0.014 4.014 12 C -0.176 4.176 13 C -0.143 4.143 14 C -0.014 4.014 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.093 0.907 18 C -0.127 4.127 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.184 1.184 24 C -0.007 4.007 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.347 22.659 -2.392 22.906 hybrid contribution -0.632 0.212 -0.537 0.856 sum 1.715 22.871 -2.929 23.121 Atomic orbital electron populations 1.22581 0.97133 1.02571 1.02016 1.20923 0.92201 0.94162 0.91310 1.21819 1.01883 0.94312 1.01503 1.21908 1.01849 1.00535 0.95738 1.60675 1.63384 1.02643 1.04431 1.21764 0.98122 0.88147 0.98073 1.21607 1.03197 0.93312 0.99618 1.20514 0.80616 0.87629 0.81825 1.90680 1.38816 1.76333 1.36990 1.48507 1.50139 1.13551 1.21985 1.21693 0.92183 0.97315 0.90212 1.22009 0.96820 0.97429 1.01362 1.21577 0.99930 0.93063 0.99708 1.19452 0.92515 0.95060 0.94369 0.94803 1.20898 1.45063 0.92740 0.96565 0.90697 1.25072 0.94173 0.94760 0.98716 1.69901 1.44537 1.07369 1.31513 0.86915 0.79190 0.79886 0.84087 1.20250 1.21498 1.18357 1.22382 0.99052 0.77008 1.02284 0.92791 0.92159 0.91883 0.91777 0.92270 0.92862 0.92165 0.92477 0.91829 0.84536 0.89861 0.93967 0.89556 0.88419 0.91706 0.90645 0.91736 0.92132 0.92778 0.92213 0.92526 0.90065 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.23 37.16 0.31 -1.35 16 2 C 0.10 0.96 0.97 -131.60 -0.13 0.83 16 3 C -0.14 -1.03 8.73 37.16 0.32 -0.70 16 4 C -0.14 -1.39 8.24 37.16 0.31 -1.08 16 5 N -0.68 -6.74 6.09 -99.96 -0.61 -7.35 16 6 C 0.07 0.84 4.19 -3.83 -0.02 0.83 16 7 C -0.14 -1.71 4.31 -27.89 -0.12 -1.83 16 8 C 0.51 9.01 7.70 -10.99 -0.08 8.93 16 9 O -0.55 -12.09 15.40 5.55 0.09 -12.01 16 10 N -0.61 -10.89 2.97 -172.81 -0.51 -11.40 16 11 C 0.11 1.49 6.34 -3.71 -0.02 1.46 16 12 C -0.14 -2.01 6.08 -26.61 -0.16 -2.18 16 13 C -0.10 -1.97 5.15 -26.69 -0.14 -2.11 16 14 C 0.01 0.13 1.91 -91.69 -0.18 -0.04 16 15 H 0.03 0.82 5.28 -51.93 -0.27 0.55 16 16 C -0.51 -14.17 8.87 -34.44 -0.31 -14.47 16 17 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 19 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 20 Si 0.87 22.34 26.99 -169.99 -4.59 17.76 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.26 -6.73 6.82 56.52 0.39 -6.34 16 24 C 0.11 2.48 5.70 -3.75 -0.02 2.46 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.67 6.40 -51.93 -0.33 0.33 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.67 6.40 -51.93 -0.33 0.34 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.34 2.86 8.72 -39.29 -0.34 2.52 16 35 H 0.08 1.20 6.26 -51.92 -0.33 0.87 16 36 H 0.04 0.57 6.26 -51.93 -0.33 0.24 16 37 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 38 H 0.10 1.13 7.69 -51.93 -0.40 0.73 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.08 2.02 7.01 -51.93 -0.36 1.66 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -31.99 358.43 -8.27 -40.26 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.49 Total: 1.12 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.33 Total: -7.16 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.35 Total: -45.37 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.59 Total: 17.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.99 -8.27 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.497 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds