Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46831 * 2 1 4 4 C 1.53002 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47493 * 304.99649 * 4 3 2 6 6 C 1.53006 * 109.47016 * 65.00107 * 4 3 2 7 7 C 1.53001 * 109.46856 * 185.08698 * 6 4 3 8 8 C 1.50703 * 109.46965 * 184.99722 * 4 3 2 9 9 O 1.21279 * 119.99901 * 265.97723 * 8 4 3 10 10 N 1.34775 * 119.99708 * 85.97591 * 8 4 3 11 11 C 1.47074 * 120.88188 * 354.63386 * 10 8 4 12 12 C 1.53701 * 108.27338 * 128.75696 * 11 10 8 13 13 N 1.46892 * 109.26104 * 54.08211 * 12 11 10 14 14 C 1.46896 * 111.00248 * 172.60780 * 13 12 11 15 15 C 1.50702 * 109.47224 * 294.30105 * 14 13 12 16 16 H 1.07999 * 119.99617 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00075 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.46924 * 90.00006 * 19 17 15 21 21 H 1.48501 * 109.46472 * 209.99976 * 19 17 15 22 22 H 1.48495 * 109.46903 * 329.99751 * 19 17 15 23 23 C 1.46904 * 111.27008 * 296.75923 * 13 12 11 24 24 C 1.47082 * 120.87520 * 174.91259 * 10 8 4 25 25 H 1.08999 * 109.46984 * 60.00301 * 1 2 3 26 26 H 1.09003 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47211 * 300.00209 * 1 2 3 28 28 H 1.09003 * 109.47211 * 239.99791 * 2 1 3 29 29 H 1.08999 * 109.46984 * 119.99699 * 2 1 3 30 30 H 1.08999 * 109.47090 * 299.99634 * 3 2 1 31 31 H 1.08995 * 109.47098 * 59.99752 * 3 2 1 32 32 H 1.08999 * 109.46779 * 305.07873 * 6 4 3 33 33 H 1.09000 * 109.47161 * 65.08638 * 6 4 3 34 34 H 1.09004 * 109.47517 * 54.41729 * 7 6 4 35 35 H 1.08997 * 109.47197 * 174.42149 * 7 6 4 36 36 H 1.09007 * 109.46759 * 294.41964 * 7 6 4 37 37 H 1.09001 * 109.62822 * 248.51854 * 11 10 8 38 38 H 1.09000 * 109.62966 * 9.10671 * 11 10 8 39 39 H 1.09004 * 109.64901 * 294.07537 * 12 11 10 40 40 H 1.08999 * 109.41852 * 173.95112 * 12 11 10 41 41 H 1.08995 * 109.47179 * 54.30185 * 14 13 12 42 42 H 1.09005 * 109.47419 * 174.30274 * 14 13 12 43 43 H 0.97001 * 120.00172 * 180.02562 * 18 17 15 44 44 H 1.09008 * 109.48867 * 303.14425 * 23 13 12 45 45 H 1.08992 * 109.51773 * 183.08134 * 23 13 12 46 46 H 1.08991 * 109.63187 * 350.89662 * 24 10 8 47 47 H 1.09003 * 109.62842 * 111.48258 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8409 6 6 4.0794 0.8331 -1.3084 7 6 5.6041 0.7164 -1.2567 8 6 4.0723 2.8580 0.1231 9 8 4.3435 3.4945 -0.8730 10 7 4.2202 3.4165 1.3408 11 6 3.7879 2.7068 2.5543 12 6 4.9552 2.7068 3.5542 13 7 5.4077 4.0875 3.7707 14 6 6.4033 4.1522 4.8489 15 6 5.7551 3.7707 6.1548 16 1 4.7081 3.5069 6.1812 17 6 6.4986 3.7583 7.3159 18 7 5.9328 3.4258 8.4555 19 14 8.3093 4.2153 7.2703 20 1 8.4564 5.6771 7.4855 21 1 9.0318 3.4821 8.3407 22 1 8.8789 3.8496 5.9486 23 6 5.9341 4.6762 2.5320 24 6 4.8126 4.7543 1.4907 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.6436 -0.1570 -1.4417 33 1 3.7920 1.4722 -2.1433 34 1 5.8960 0.1602 -0.3658 35 1 5.9587 0.1928 -2.1444 36 1 6.0438 1.7133 -1.2229 37 1 2.9286 3.2165 2.9900 38 1 3.5197 1.6807 2.3025 39 1 5.7780 2.1124 3.1571 40 1 4.6218 2.2807 4.5004 41 1 7.2185 3.4619 4.6326 42 1 6.7956 5.1667 4.9208 43 1 6.4557 3.4175 9.2724 44 1 6.7434 4.0543 2.1491 45 1 6.3111 5.6782 2.7366 46 1 5.2222 5.0826 0.5354 47 1 4.0499 5.4570 1.8262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827485651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = -49.258016 kcal Electronic energy + Delta-G solvation = -23442.129051 eV Core-core repulsion = 20238.158948 eV Total energy + Delta-G solvation = -3203.970103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35469 -37.88471 -36.28369 -34.48809 -33.13497 -32.42560 -30.97685 -29.41957 -28.56959 -25.93756 -24.52566 -23.50094 -22.72561 -21.72051 -21.02773 -20.01000 -18.50322 -17.34059 -16.85503 -15.76672 -15.49257 -15.20849 -14.74209 -14.59483 -14.36123 -14.28426 -13.77213 -13.60576 -13.51585 -13.35733 -13.00766 -12.61927 -12.42462 -12.20542 -12.17765 -11.83984 -11.61221 -11.45666 -11.31219 -11.19698 -11.13809 -10.91867 -10.81817 -10.75417 -10.58010 -10.55372 -10.34740 -9.94028 -9.46630 -9.37187 -8.63181 -8.48667 -7.48818 -6.11700 -4.09721 2.72899 3.11618 3.24205 3.32044 3.33711 4.36383 4.40308 4.54483 4.61135 4.70620 4.90238 4.97400 5.04887 5.19946 5.21576 5.26752 5.32468 5.34784 5.45201 5.50392 5.56255 5.57487 5.59301 5.68934 5.70415 5.73503 5.76312 5.93205 5.93612 5.97300 6.02297 6.10638 6.15967 6.18677 6.22979 6.34688 6.40829 6.61852 6.78302 6.89611 7.49960 7.54244 7.79717 7.92553 8.29615 8.57049 8.95270 9.49899 11.01110 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.004020 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.563072 B = 6963.965733 C = 7535.091265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.110 4.110 5 H 0.093 0.907 6 C -0.106 4.106 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.551 6.551 10 N -0.609 5.609 11 C 0.108 3.892 12 C 0.049 3.951 13 N -0.526 5.526 14 C 0.162 3.838 15 C -0.512 4.512 16 H 0.081 0.919 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.039 3.961 24 C 0.118 3.882 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.025 0.975 40 H 0.102 0.898 41 H -0.011 1.011 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -6.274 -17.274 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.131 4.131 5 H 0.111 0.889 6 C -0.144 4.144 7 C -0.212 4.212 8 C 0.309 3.691 9 O -0.429 6.429 10 N -0.342 5.342 11 C -0.015 4.015 12 C -0.080 4.080 13 N -0.251 5.251 14 C 0.036 3.964 15 C -0.550 4.550 16 H 0.099 0.901 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.091 4.091 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.043 0.957 40 H 0.121 0.879 41 H 0.006 0.994 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.504 -5.674 -17.447 19.465 hybrid contribution 1.785 -0.171 0.139 1.799 sum -4.719 -5.845 -17.308 18.868 Atomic orbital electron populations 1.21772 0.95722 1.01603 1.01941 1.21587 0.95947 0.96228 1.02402 1.21563 0.92390 0.97763 1.03024 1.21479 0.97178 0.93734 1.00716 0.88874 1.21439 0.96082 1.00550 0.96339 1.21807 0.95886 1.02202 1.01345 1.20592 0.77321 0.88600 0.82595 1.90638 1.51642 1.64182 1.36421 1.48266 1.61006 1.18541 1.06349 1.22159 0.98264 0.96761 0.84343 1.22460 0.95593 0.90475 0.99469 1.61884 1.40398 1.17887 1.04885 1.20180 0.89822 0.96011 0.90361 1.21002 0.98630 1.45885 0.89491 0.90052 1.24884 0.98071 0.94844 0.95381 1.69884 1.36452 1.48651 0.98736 0.86879 0.85969 0.79026 0.77986 1.20094 1.21158 1.19349 1.22457 0.95094 1.00421 0.91093 1.21705 0.95986 0.83521 0.99209 0.92826 0.92738 0.92553 0.91589 0.91661 0.91286 0.91266 0.91178 0.90844 0.92979 0.92722 0.92298 0.90404 0.89812 0.95653 0.87946 0.99369 0.95632 0.92592 0.95555 0.90093 0.89487 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.96 5.70 -26.73 -0.15 -1.12 16 3 C -0.11 -1.04 4.49 -26.73 -0.12 -1.16 16 4 C -0.11 -1.21 1.34 -91.77 -0.12 -1.33 16 5 H 0.09 0.96 6.42 -51.93 -0.33 0.63 16 6 C -0.11 -1.10 4.96 -26.73 -0.13 -1.24 16 7 C -0.16 -1.70 9.62 37.16 0.36 -1.34 16 8 C 0.52 7.51 6.10 -10.98 -0.07 7.45 16 9 O -0.55 -9.53 14.81 5.56 0.08 -9.44 16 10 N -0.61 -8.93 3.00 -172.18 -0.52 -9.45 16 11 C 0.11 1.50 6.07 -3.36 -0.02 1.48 16 12 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 13 N -0.53 -10.45 4.62 -235.46 -1.09 -11.54 16 14 C 0.16 3.80 3.79 -4.98 -0.02 3.78 16 15 C -0.51 -13.95 8.96 -34.44 -0.31 -14.26 16 16 H 0.08 2.39 7.37 -52.49 -0.39 2.00 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 19 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 24 C 0.12 1.80 6.58 -3.60 -0.02 1.78 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.48 6.46 -51.93 -0.34 0.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.67 7.58 -51.93 -0.39 0.28 16 32 H 0.07 0.59 6.34 -51.93 -0.33 0.26 16 33 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.78 7.06 -51.93 -0.37 0.41 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.95 5.30 -51.93 -0.28 0.67 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.98 6.67 -51.93 -0.35 1.64 16 41 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 42 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 45 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 46 H 0.09 1.31 7.10 -51.93 -0.37 0.95 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -30.78 357.11 -8.94 -39.72 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.52 Total: -1.69 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.38 Total: -3.36 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.83 Total: -46.97 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.78 -8.94 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.535 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds