Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47360 * 2 1 4 4 C 1.52998 * 109.47494 * 184.89364 * 3 2 1 5 5 H 1.08998 * 109.47147 * 55.31833 * 4 3 2 6 6 C 1.53000 * 109.46970 * 295.32303 * 4 3 2 7 7 C 1.53003 * 109.47282 * 295.92459 * 6 4 3 8 8 C 1.50697 * 109.47507 * 175.32251 * 4 3 2 9 9 O 1.21287 * 119.99848 * 15.23223 * 8 4 3 10 10 N 1.34776 * 120.00110 * 195.23363 * 8 4 3 11 11 C 1.47075 * 120.88235 * 353.93222 * 10 8 4 12 12 C 1.53241 * 108.52433 * 129.08654 * 11 10 8 13 13 N 1.46903 * 109.33570 * 53.82762 * 12 11 10 14 14 C 1.46904 * 110.99736 * 172.74726 * 13 12 11 15 15 C 1.50707 * 109.46915 * 294.30705 * 14 13 12 16 16 H 1.08001 * 120.00048 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99544 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00280 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99809 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46859 * 90.00060 * 19 17 15 21 21 H 1.48494 * 109.47083 * 210.00170 * 19 17 15 22 22 H 1.48496 * 109.46858 * 330.00454 * 19 17 15 23 23 C 1.46891 * 111.27250 * 296.89623 * 13 12 11 24 24 C 1.47085 * 120.87846 * 174.21081 * 10 8 4 25 25 H 1.08992 * 109.47123 * 300.00241 * 1 2 3 26 26 H 1.09002 * 109.46353 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46903 * 240.00024 * 2 1 3 29 29 H 1.09001 * 109.47057 * 119.99930 * 2 1 3 30 30 H 1.09003 * 109.46999 * 64.89158 * 3 2 1 31 31 H 1.09002 * 109.47360 * 304.89473 * 3 2 1 32 32 H 1.09003 * 109.47621 * 55.92129 * 6 4 3 33 33 H 1.09001 * 109.47098 * 175.92459 * 6 4 3 34 34 H 1.08990 * 109.47664 * 184.99856 * 7 6 4 35 35 H 1.09000 * 109.46662 * 305.00193 * 7 6 4 36 36 H 1.09002 * 109.47284 * 64.99476 * 7 6 4 37 37 H 1.09002 * 109.62944 * 248.80024 * 11 10 8 38 38 H 1.09003 * 109.62666 * 9.38018 * 11 10 8 39 39 H 1.08998 * 109.49280 * 293.87207 * 12 11 10 40 40 H 1.08995 * 109.49634 * 173.78968 * 12 11 10 41 41 H 1.09001 * 109.47043 * 54.29959 * 14 13 12 42 42 H 1.08994 * 109.46851 * 174.30641 * 14 13 12 43 43 H 0.97003 * 120.00268 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.49301 * 303.14383 * 23 13 12 45 45 H 1.08999 * 109.49137 * 183.06495 * 23 13 12 46 46 H 1.08999 * 109.63099 * 350.62128 * 24 10 8 47 47 H 1.08995 * 109.62499 * 111.20461 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5651 1.4442 -0.1230 5 1 3.8587 0.8842 -1.0109 6 6 4.1776 0.7910 1.1175 7 6 3.8503 1.6337 2.3519 8 6 4.0582 2.8635 -0.2386 9 8 3.3245 3.7857 0.0485 10 7 5.3144 3.1083 -0.6611 11 6 6.2626 2.0071 -0.8876 12 6 6.8731 2.1697 -2.2838 13 7 7.4440 3.5172 -2.4111 14 6 8.1891 3.6565 -3.6695 15 6 9.3927 2.7499 -3.6436 16 1 9.5851 2.1324 -2.7787 17 6 10.2481 2.7089 -4.7241 18 7 10.0135 3.4605 -5.7775 19 14 11.7404 1.5857 -4.6918 20 1 11.3732 0.2587 -5.2480 21 1 12.8266 2.1821 -5.5102 22 1 12.2076 1.4236 -3.2916 23 6 6.4049 4.5492 -2.2975 24 6 5.7753 4.4841 -0.9020 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7501 1.9303 0.9306 31 1 1.6070 1.9810 -0.8429 32 1 3.7657 -0.2105 1.2418 33 1 5.2591 0.7268 0.9979 34 1 4.3597 1.2181 3.2212 35 1 4.1840 2.6588 2.1908 36 1 2.7738 1.6247 2.5230 37 1 7.0517 2.0430 -0.1365 38 1 5.7379 1.0536 -0.8263 39 1 6.0985 2.0301 -3.0379 40 1 7.6580 1.4271 -2.4263 41 1 7.5454 3.3819 -4.5051 42 1 8.5151 4.6900 -3.7861 43 1 10.6155 3.4319 -6.5376 44 1 5.6369 4.3765 -3.0515 45 1 6.8504 5.5322 -2.4501 46 1 4.9284 5.1683 -0.8501 47 1 6.5175 4.7581 -0.1523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827485654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -51.969430 kcal Electronic energy + Delta-G solvation = -23376.571998 eV Core-core repulsion = 20172.484319 eV Total energy + Delta-G solvation = -3204.087679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38244 -37.83080 -36.31998 -34.42880 -33.12538 -32.36191 -30.81483 -29.05704 -28.19017 -25.85818 -24.92055 -23.21413 -23.07758 -21.95640 -20.96152 -19.69339 -18.39703 -16.90995 -16.41071 -16.00926 -15.84123 -15.15923 -14.78821 -14.52395 -14.36639 -13.95539 -13.89021 -13.75797 -13.49676 -13.21504 -12.80541 -12.52078 -12.29474 -12.17132 -11.99801 -11.85970 -11.40177 -11.29022 -11.21421 -11.10281 -11.04502 -10.94339 -10.76718 -10.71934 -10.59916 -10.53750 -10.50941 -9.90765 -9.43312 -9.29418 -8.51854 -8.40631 -7.34455 -6.08337 -4.10565 2.77883 3.16128 3.27525 3.34455 3.38054 4.36750 4.44778 4.56586 4.71295 4.77370 4.94616 4.98839 5.06025 5.16130 5.26279 5.29260 5.38809 5.43096 5.47351 5.53782 5.54576 5.64098 5.65502 5.71167 5.74112 5.79708 5.82952 5.90794 5.93455 6.00969 6.05729 6.10970 6.16089 6.27848 6.32545 6.43854 6.45469 6.71810 7.20156 7.25862 7.60296 7.72529 7.99528 8.10152 8.33305 8.45334 8.96622 9.54096 11.02465 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.003622 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.562595 B = 7729.271723 C = 8048.097099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.109 4.109 5 H 0.093 0.907 6 C -0.118 4.118 7 C -0.154 4.154 8 C 0.521 3.479 9 O -0.551 6.551 10 N -0.608 5.608 11 C 0.107 3.893 12 C 0.049 3.951 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.041 3.959 24 C 0.118 3.882 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 -6.607 12.461 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.131 4.131 5 H 0.111 0.889 6 C -0.156 4.156 7 C -0.212 4.212 8 C 0.310 3.690 9 O -0.430 6.430 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.080 4.080 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.912 -5.987 12.807 19.835 hybrid contribution 0.463 -0.651 -0.987 1.270 sum -13.450 -6.638 11.820 19.096 Atomic orbital electron populations 1.21760 0.95878 1.01380 1.01903 1.21594 0.95872 0.96768 1.02064 1.21451 0.92393 0.96562 1.03446 1.21417 0.97496 0.93743 1.00419 0.88919 1.21614 1.01025 0.99441 0.93510 1.21833 1.01803 1.00346 0.97186 1.20557 0.81054 0.91286 0.76133 1.90649 1.55742 1.46476 1.50102 1.48229 1.11686 1.08284 1.65889 1.22097 0.91879 0.88925 0.98674 1.22346 0.98168 0.93880 0.93611 1.62076 1.22837 1.00877 1.40254 1.19729 0.92267 0.97926 0.83205 1.21133 1.08252 1.23760 1.01692 0.91801 1.24998 0.98173 0.96003 0.95404 1.69955 1.38049 1.39641 1.06041 0.86497 0.82305 0.80522 0.78101 1.20723 1.21247 1.19720 1.22403 0.93911 0.97610 0.94881 1.21728 0.98868 0.82644 0.97191 0.92774 0.92747 0.92880 0.91995 0.91757 0.90783 0.91660 0.90632 0.91089 0.92708 0.92453 0.92318 0.90646 0.89922 0.95763 0.88500 0.99133 0.95038 0.92850 0.95627 0.90108 0.89599 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.04 5.56 -26.73 -0.15 -1.19 16 3 C -0.10 -1.07 3.86 -26.73 -0.10 -1.17 16 4 C -0.11 -1.22 1.65 -91.77 -0.15 -1.37 16 5 H 0.09 0.97 7.10 -51.93 -0.37 0.61 16 6 C -0.12 -1.11 5.24 -26.73 -0.14 -1.25 16 7 C -0.15 -1.56 9.32 37.16 0.35 -1.21 16 8 C 0.52 7.68 5.47 -10.99 -0.06 7.62 16 9 O -0.55 -9.72 15.38 5.55 0.09 -9.63 16 10 N -0.61 -9.15 3.01 -172.46 -0.52 -9.67 16 11 C 0.11 1.51 5.55 -3.60 -0.02 1.49 16 12 C 0.05 0.88 5.46 -3.70 -0.02 0.86 16 13 N -0.54 -11.05 4.62 -235.76 -1.09 -12.14 16 14 C 0.19 4.90 4.72 -4.97 -0.02 4.87 16 15 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 16 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 19 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 24 C 0.12 1.87 6.58 -3.60 -0.02 1.85 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.48 6.71 -51.93 -0.35 0.14 16 30 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.58 6.48 -51.93 -0.34 0.25 16 33 H 0.07 0.66 6.20 -51.93 -0.32 0.34 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.72 6.78 -51.93 -0.35 0.36 16 36 H 0.06 0.57 6.69 -51.93 -0.35 0.22 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.93 4.81 -51.93 -0.25 0.68 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.83 6.67 -51.93 -0.35 1.49 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 46 H 0.09 1.36 7.11 -51.93 -0.37 0.99 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -30.44 355.81 -9.19 -39.63 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.36 Total: -1.85 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.38 Total: -2.22 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.87 Total: -47.27 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.44 -9.19 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.342 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds