Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 C 1.52994 * 109.47750 * 120.00377 * 2 1 3 5 5 N 1.46899 * 109.47124 * 63.31356 * 4 2 1 6 6 C 1.46907 * 111.00029 * 196.36290 * 5 4 2 7 7 C 1.50701 * 109.47136 * 66.04548 * 6 5 4 8 8 H 1.08000 * 119.99897 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99502 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00059 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99620 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46995 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.47402 * 300.00562 * 11 9 7 14 14 H 1.48502 * 109.47147 * 60.00542 * 11 9 7 15 15 C 1.46898 * 111.00256 * 72.40510 * 5 4 2 16 16 C 1.53000 * 109.47443 * 198.56968 * 15 5 4 17 17 H 1.09006 * 108.56190 * 303.83007 * 16 15 5 18 18 C 1.51776 * 108.61392 * 185.90226 * 16 15 5 19 19 C 1.52989 * 110.88162 * 171.87542 * 18 16 15 20 20 N 1.47199 * 108.66264 * 86.46607 * 19 18 16 21 21 C 1.33372 * 120.42272 * 288.04223 * 20 19 18 22 22 O 1.21288 * 119.88612 * 180.28856 * 21 20 19 23 23 C 1.51425 * 120.22328 * 0.30364 * 21 20 19 24 24 C 1.51787 * 108.61669 * 61.63673 * 16 15 5 25 25 H 1.09004 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47017 * 299.99576 * 1 2 3 27 27 H 1.09001 * 109.47439 * 59.99759 * 1 2 3 28 28 H 1.09000 * 109.47017 * 240.00424 * 2 1 3 29 29 H 1.08994 * 109.47224 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47143 * 300.00423 * 3 2 1 31 31 H 1.09000 * 109.46811 * 60.00298 * 3 2 1 32 32 H 1.09004 * 109.47138 * 303.31779 * 4 2 1 33 33 H 1.08990 * 109.47884 * 183.31565 * 4 2 1 34 34 H 1.08997 * 109.46927 * 306.04271 * 6 5 4 35 35 H 1.09005 * 109.46940 * 186.04528 * 6 5 4 36 36 H 0.97000 * 119.99573 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47021 * 318.57333 * 15 5 4 38 38 H 1.09002 * 109.46964 * 78.56843 * 15 5 4 39 39 H 1.09004 * 109.19188 * 292.23331 * 18 16 15 40 40 H 1.09000 * 109.20034 * 51.51445 * 18 16 15 41 41 H 1.08996 * 109.60391 * 206.21649 * 19 18 16 42 42 H 1.09003 * 109.60534 * 326.71363 * 19 18 16 43 43 H 0.96991 * 119.78873 * 108.06391 * 20 19 18 44 44 H 1.08997 * 109.63159 * 190.91222 * 23 21 20 45 45 H 1.09000 * 109.63117 * 311.31660 * 23 21 20 46 46 H 1.09005 * 109.22116 * 308.25362 * 24 16 15 47 47 H 1.09001 * 109.22439 * 67.60166 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6169 -2.1275 1.2097 6 6 1.7392 -2.7514 2.5340 7 6 0.7614 -2.1092 3.4841 8 1 0.1136 -1.3172 3.1385 9 6 0.6932 -2.5337 4.7942 10 7 1.4817 -3.4985 5.2147 11 14 -0.5184 -1.7372 5.9720 12 1 -0.3948 -2.3680 7.3106 13 1 -0.2227 -0.2859 6.0799 14 1 -1.9004 -1.9242 5.4619 15 6 2.3776 -2.8781 0.2018 16 6 1.6316 -4.1685 -0.1436 17 1 1.4690 -4.7319 0.7753 18 6 2.5005 -4.9967 -1.0724 19 6 1.8956 -6.3846 -1.2919 20 7 0.9332 -6.3086 -2.4031 21 6 -0.2373 -5.6902 -2.2417 22 8 -1.0252 -5.6379 -3.1624 23 6 -0.5859 -5.0528 -0.9131 24 6 0.2802 -3.8045 -0.7311 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6290 -0.2430 2.1382 33 1 3.1283 -0.6701 1.2793 34 1 2.7536 -2.6134 2.9084 35 1 1.5228 -3.8168 2.4551 36 1 1.4339 -3.7968 6.1365 37 1 2.4883 -2.2708 -0.6965 38 1 3.3629 -3.1231 0.5984 39 1 2.5862 -4.4872 -2.0322 40 1 3.4929 -5.1035 -0.6344 41 1 2.6859 -7.0929 -1.5403 42 1 1.3831 -6.7077 -0.3857 43 1 1.1517 -6.7112 -3.2581 44 1 -1.6390 -4.7718 -0.9068 45 1 -0.3902 -5.7586 -0.1058 46 1 -0.2272 -3.1103 -0.0611 47 1 0.4269 -3.3254 -1.6991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827873654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = -62.068487 kcal Electronic energy + Delta-G solvation = -23852.613198 eV Core-core repulsion = 20648.087591 eV Total energy + Delta-G solvation = -3204.525607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10158 -38.04082 -36.37479 -34.43938 -33.43990 -32.18171 -31.03852 -28.07978 -26.90154 -26.67911 -24.69259 -24.03186 -23.02776 -20.92399 -19.98612 -19.56077 -18.88574 -17.17491 -16.66611 -16.33857 -15.19492 -14.91277 -14.77480 -14.35870 -14.05149 -13.83422 -13.73280 -13.53685 -13.20410 -12.80107 -12.53297 -12.32902 -12.22481 -11.93942 -11.82414 -11.70914 -11.31326 -11.25881 -11.15538 -10.83608 -10.72907 -10.59505 -10.45986 -10.35155 -10.22398 -10.10577 -9.95457 -9.56711 -9.52304 -9.18405 -9.04395 -8.43489 -7.20498 -6.04248 -4.04634 2.79620 3.32039 3.36598 3.37344 3.39460 4.40824 4.63944 4.70849 4.92343 4.96726 5.11416 5.30859 5.33212 5.37061 5.43260 5.43730 5.58980 5.60666 5.69481 5.82582 5.90832 5.92158 5.97284 6.05075 6.12621 6.14285 6.24769 6.28508 6.28960 6.38125 6.46519 6.54680 6.59703 6.70911 6.75357 6.84836 6.91577 7.01144 7.29677 7.31778 7.36062 7.80787 8.10547 8.22200 8.33618 8.55834 9.03503 9.59667 11.06489 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.005542 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.949700 B = 5050.707455 C = 6063.235174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.067 3.933 5 N -0.531 5.531 6 C 0.194 3.806 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.289 1.289 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.057 3.943 16 C -0.086 4.086 17 H 0.079 0.921 18 C -0.135 4.135 19 C 0.109 3.891 20 N -0.726 5.726 21 C 0.520 3.480 22 O -0.564 6.564 23 C -0.139 4.139 24 C -0.095 4.095 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.015 0.985 34 H -0.013 1.013 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.395 0.605 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -1.365 -11.775 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.061 4.061 5 N -0.254 5.254 6 C 0.069 3.931 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.215 1.215 13 H -0.204 1.204 14 H -0.202 1.202 15 C -0.071 4.071 16 C -0.105 4.105 17 H 0.097 0.903 18 C -0.174 4.174 19 C -0.015 4.015 20 N -0.378 5.378 21 C 0.308 3.692 22 O -0.443 6.443 23 C -0.179 4.179 24 C -0.133 4.133 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.005 0.995 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.230 0.770 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.120 0.880 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.298 -1.361 -11.996 12.290 hybrid contribution 0.570 0.172 0.768 0.972 sum 2.868 -1.189 -11.228 11.649 Atomic orbital electron populations 1.21691 0.94828 1.02750 0.99844 1.21129 0.96712 0.94722 0.98497 1.21815 1.00329 0.96901 1.01263 1.22036 0.96073 0.90035 0.97968 1.62038 1.53838 1.00987 1.08580 1.19727 0.95319 0.95084 0.82992 1.21130 1.19940 1.19369 0.93866 0.91894 1.24958 0.96023 0.95231 0.98272 1.69940 1.38725 1.28376 1.16860 0.86630 0.81763 0.79452 0.79979 1.21469 1.20370 1.20175 1.22117 0.94429 0.94533 0.96056 1.20797 0.94573 0.96411 0.98693 0.90280 1.21856 0.99616 0.95288 1.00640 1.21801 0.91842 0.97688 0.90171 1.45988 1.18200 1.57752 1.15860 1.20841 0.80648 0.76867 0.90857 1.90714 1.49556 1.60219 1.43802 1.22031 1.02606 0.99199 0.94091 1.21181 0.94873 0.95859 1.01403 0.91079 0.93198 0.94640 0.92275 0.93396 0.93324 0.92723 0.89667 0.96695 0.99549 0.94991 0.92965 0.92317 0.95842 0.91603 0.90752 0.89859 0.90220 0.76993 0.88820 0.89290 0.88019 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.07 37.15 0.34 -1.70 16 2 C -0.09 -1.37 2.93 -90.63 -0.27 -1.64 16 3 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 4 C 0.07 1.22 4.21 -3.83 -0.02 1.20 16 5 N -0.53 -10.08 2.85 -236.07 -0.67 -10.76 16 6 C 0.19 4.63 4.56 -4.97 -0.02 4.60 16 7 C -0.50 -13.29 8.28 -34.44 -0.29 -13.58 16 8 H 0.06 1.65 7.26 -52.49 -0.38 1.27 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.06 0.91 4.14 -3.82 -0.02 0.90 16 16 C -0.09 -1.20 1.78 -91.86 -0.16 -1.36 16 17 H 0.08 1.27 6.29 -51.93 -0.33 0.94 16 18 C -0.14 -1.46 4.98 -27.36 -0.14 -1.60 16 19 C 0.11 1.02 6.47 -3.67 -0.02 0.99 16 20 N -0.73 -7.95 5.27 -59.89 -0.32 -8.27 16 21 C 0.52 7.45 7.06 -11.25 -0.08 7.37 16 22 O -0.56 -10.26 17.92 5.55 0.10 -10.17 16 23 C -0.14 -1.89 5.56 -27.52 -0.15 -2.05 16 24 C -0.10 -1.36 4.88 -27.34 -0.13 -1.50 16 25 H 0.07 1.17 6.52 -51.93 -0.34 0.83 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.86 6.48 -51.93 -0.34 0.53 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.75 6.59 -51.93 -0.34 1.41 16 33 H 0.01 0.27 8.05 -51.93 -0.42 -0.15 16 34 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 35 H 0.03 0.81 6.48 -51.93 -0.34 0.47 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.06 0.87 6.25 -51.93 -0.32 0.54 16 38 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 39 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 40 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.78 6.71 -51.93 -0.35 0.43 16 43 H 0.39 3.76 8.91 -40.82 -0.36 3.39 16 44 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 45 H 0.09 1.13 6.79 -51.93 -0.35 0.78 16 46 H 0.10 1.67 6.13 -51.93 -0.32 1.35 16 47 H 0.05 0.76 7.86 -51.93 -0.41 0.36 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -30.03 356.48 -8.87 -38.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.36 Total: 2.31 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.71 Total: -8.47 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.25 Total: -43.99 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.03 -8.87 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827873654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.168 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds