Wall clock time and date at job start Tue Mar 31 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 13 13 N 1.46500 * 109.47007 * 60.00219 * 12 2 1 14 14 C 1.34773 * 119.99996 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00092 * 359.97438 * 14 13 12 16 16 N 1.34784 * 120.00214 * 180.02562 * 14 13 12 17 17 C 1.46966 * 120.36013 * 359.71905 * 16 14 13 18 18 C 1.52840 * 108.83498 * 68.62621 * 17 16 14 19 19 C 1.53800 * 109.25563 * 72.59768 * 18 17 16 20 20 C 1.52443 * 109.40214 * 282.12271 * 19 18 17 21 21 C 1.53954 * 110.73116 * 113.73070 * 20 19 18 22 22 C 1.52883 * 109.73037 * 315.63158 * 21 20 19 23 23 C 1.45327 * 120.36612 * 179.97438 * 16 14 13 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.46952 * 300.00302 * 12 2 1 33 33 H 0.96998 * 120.00098 * 0.02562 * 13 12 2 34 34 H 1.08998 * 109.52520 * 188.26944 * 17 16 14 35 35 H 1.08994 * 109.53541 * 308.49693 * 17 16 14 36 36 H 1.08999 * 109.50789 * 312.64282 * 18 17 16 37 37 H 1.08994 * 109.44024 * 192.51168 * 18 17 16 38 38 H 1.08998 * 109.47983 * 162.14449 * 19 18 17 39 39 H 1.09001 * 109.49339 * 42.11115 * 19 18 17 40 40 H 1.09004 * 109.22487 * 353.40598 * 20 19 18 41 41 H 1.09002 * 109.19299 * 234.02869 * 20 19 18 42 42 H 1.09003 * 109.42686 * 195.55617 * 21 20 19 43 43 H 1.08995 * 109.42987 * 75.70940 * 21 20 19 44 44 H 1.09001 * 109.48698 * 167.13112 * 22 21 20 45 45 H 1.08999 * 109.48155 * 47.07971 * 22 21 20 46 46 H 1.09005 * 109.67860 * 343.05029 * 23 16 14 47 47 H 1.09001 * 109.67646 * 103.55321 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5866 4.8165 12 6 2.0401 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8769 -0.4914 -3.6694 15 8 2.5759 -1.4800 -3.7810 16 7 1.4281 0.1443 -4.7700 17 6 0.5786 1.3369 -4.6444 18 6 1.4157 2.4811 -4.0733 19 6 2.3901 2.9840 -5.1516 20 6 3.5662 2.0202 -5.2606 21 6 3.5663 1.3130 -6.6281 22 6 2.1489 0.8551 -6.9724 23 6 1.7743 -0.3454 -6.0937 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.7094 1.1618 3.4844 31 1 3.1301 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 0.9944 0.7582 -2.3564 34 1 0.1996 1.6193 -5.6266 35 1 -0.2567 1.1209 -3.9784 36 1 1.9791 2.1246 -3.2109 37 1 0.7578 3.2949 -3.7686 38 1 2.7554 3.9739 -4.8783 39 1 1.8748 3.0387 -6.1106 40 1 3.4926 1.2733 -4.4702 41 1 4.4968 2.5758 -5.1439 42 1 4.2273 0.4472 -6.5885 43 1 3.9201 2.0036 -7.3935 44 1 2.1054 0.5651 -8.0223 45 1 1.4491 1.6709 -6.7910 46 1 2.6221 -1.0269 -6.0229 47 1 0.9204 -0.8658 -6.5275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838754486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:36 Heat of formation + Delta-G solvation = -36.834718 kcal Electronic energy + Delta-G solvation = -24382.239922 eV Core-core repulsion = 21178.808533 eV Total energy + Delta-G solvation = -3203.431388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47022 -37.78204 -36.30675 -34.13458 -33.66038 -32.61371 -30.69561 -28.33757 -26.51779 -25.70583 -25.52247 -24.78073 -22.75526 -22.25589 -20.01957 -19.22649 -18.72245 -17.53665 -16.55653 -15.88085 -15.75930 -14.83888 -14.69439 -14.47532 -14.19176 -13.91500 -13.65139 -13.37644 -13.20803 -12.83372 -12.54999 -12.18914 -12.12807 -11.79158 -11.60214 -11.38940 -11.17737 -11.11142 -11.06063 -10.84093 -10.63847 -10.61093 -10.53351 -10.34691 -10.25736 -10.17305 -9.66206 -9.60165 -9.26796 -8.75379 -8.51798 -8.36828 -8.01467 -5.99888 -4.09415 3.08220 3.28810 3.37429 3.42713 3.68139 4.35334 4.46399 4.65338 4.79110 4.85149 4.94201 4.96807 5.14819 5.27034 5.34391 5.39605 5.54537 5.59736 5.70566 5.74252 5.81266 5.89071 6.01763 6.04927 6.14676 6.21642 6.26675 6.27982 6.40848 6.47742 6.54241 6.74821 6.85332 6.85740 6.98704 7.06135 7.16378 7.34879 7.44469 7.58567 7.72409 8.03791 8.15321 8.41158 8.50020 8.90802 9.12134 9.56262 11.01580 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.004333 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.955916 B = 6459.871455 C = 6696.757833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.148 3.852 13 N -0.733 5.733 14 C 0.701 3.299 15 O -0.600 6.600 16 N -0.629 5.629 17 C 0.108 3.892 18 C -0.154 4.154 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.147 4.147 23 C 0.130 3.870 24 H 0.004 0.996 25 H 0.026 0.974 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.395 0.605 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 5.691 -16.949 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.025 3.975 13 N -0.389 5.389 14 C 0.403 3.597 15 O -0.480 6.480 16 N -0.367 5.367 17 C -0.015 4.015 18 C -0.192 4.192 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.184 4.184 23 C 0.007 3.993 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.232 0.768 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.569 5.050 -16.845 17.594 hybrid contribution 0.025 -0.010 0.907 0.907 sum -0.544 5.040 -15.938 16.725 Atomic orbital electron populations 1.21812 0.97838 0.99126 0.99888 1.18360 0.92743 0.92770 0.90612 1.21818 0.98541 0.98368 0.99924 1.21028 1.31262 1.12026 0.89852 0.92384 1.24873 0.94891 0.94934 0.98817 1.69812 1.36854 1.22802 1.23042 0.86527 0.78632 0.79771 0.83027 1.19756 1.21096 1.21101 1.21570 0.97835 0.95455 0.82620 1.45730 1.55499 1.33070 1.04586 1.15972 0.80379 0.82693 0.80706 1.90863 1.43449 1.27864 1.85795 1.46974 1.54550 1.30070 1.05145 1.21646 0.92778 0.85112 1.01997 1.22422 0.99152 0.98186 0.99490 1.21713 0.96503 0.98431 0.98768 1.21732 0.97674 0.98631 0.98061 1.21691 0.96476 1.00011 0.96936 1.22324 0.98064 0.98916 0.99123 1.21225 1.00852 0.95941 0.81316 0.97707 0.95471 0.89654 0.89666 0.95488 0.97622 0.93123 0.93055 0.93089 0.76827 0.89612 0.91440 0.90194 0.90809 0.92327 0.91391 0.91158 0.92847 0.91962 0.92569 0.91349 0.90212 0.89274 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 13 N -0.73 -13.65 4.15 -65.23 -0.27 -13.92 16 14 C 0.70 12.94 6.75 -86.91 -0.59 12.35 16 15 O -0.60 -13.38 15.78 5.29 0.08 -13.29 16 16 N -0.63 -8.74 1.67 -179.82 -0.30 -9.04 16 17 C 0.11 1.18 4.98 -3.87 -0.02 1.17 16 18 C -0.15 -1.71 5.18 -26.40 -0.14 -1.84 16 19 C -0.12 -1.18 5.49 -26.60 -0.15 -1.32 16 20 C -0.12 -1.45 5.40 -26.52 -0.14 -1.60 16 21 C -0.11 -1.16 5.75 -26.29 -0.15 -1.31 16 22 C -0.15 -1.35 5.45 -26.58 -0.14 -1.49 16 23 C 0.13 1.57 6.01 -4.46 -0.03 1.55 16 24 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 27 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.00 0.10 6.66 -51.93 -0.35 -0.25 16 30 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.39 6.72 3.22 -40.82 -0.13 6.59 16 34 H 0.09 0.73 6.07 -51.93 -0.32 0.42 16 35 H 0.07 0.75 7.61 -51.93 -0.40 0.36 16 36 H 0.08 1.12 5.44 -51.93 -0.28 0.83 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.59 5.48 -51.93 -0.28 0.30 16 40 H 0.07 1.06 5.38 -51.93 -0.28 0.78 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.67 3.35 -51.93 -0.17 0.50 16 46 H 0.09 1.27 6.79 -51.93 -0.35 0.92 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -28.86 335.49 -8.88 -37.74 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.72 Total: 5.94 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.22 Total: -5.19 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.05 Total: -46.07 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.86 -8.88 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.905 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds