Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47213 * 2 1 4 4 C 1.52999 * 109.47331 * 119.99802 * 2 1 3 5 5 N 1.46896 * 109.46922 * 60.23155 * 4 2 1 6 6 C 1.46904 * 111.00104 * 77.19828 * 5 4 2 7 7 C 1.50704 * 109.46827 * 280.04094 * 6 5 4 8 8 H 1.07996 * 120.00247 * 2.05735 * 7 6 5 9 9 C 1.37879 * 119.99740 * 182.04914 * 7 6 5 10 10 N 1.31510 * 120.00245 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99892 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47226 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47087 * 119.99872 * 11 9 7 14 14 H 1.48497 * 109.47067 * 240.00045 * 11 9 7 15 15 C 1.46896 * 111.00303 * 201.14927 * 5 4 2 16 16 C 1.53004 * 109.47097 * 66.04263 * 15 5 4 17 17 C 1.50699 * 109.47105 * 180.02562 * 16 15 5 18 18 O 1.21279 * 120.00404 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99567 * 180.02562 * 17 16 15 20 20 C 1.47020 * 125.64980 * 359.69417 * 19 17 16 21 21 C 1.54310 * 107.27377 * 180.96715 * 20 19 17 22 22 C 1.55160 * 102.86354 * 22.52692 * 21 20 19 23 23 C 1.47418 * 125.64533 * 180.02562 * 19 17 16 24 24 H 1.08999 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46969 * 300.00056 * 1 2 3 26 26 H 1.09003 * 109.47339 * 60.00037 * 1 2 3 27 27 H 1.08998 * 109.46969 * 239.99944 * 2 1 3 28 28 H 1.09004 * 109.47076 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46938 * 300.00208 * 3 2 1 30 30 H 1.08998 * 109.47199 * 60.00085 * 3 2 1 31 31 H 1.08992 * 109.47138 * 300.23349 * 4 2 1 32 32 H 1.09005 * 109.47038 * 180.23145 * 4 2 1 33 33 H 1.08999 * 109.47287 * 40.03690 * 6 5 4 34 34 H 1.09004 * 109.47367 * 160.04785 * 6 5 4 35 35 H 0.96997 * 120.00161 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47910 * 186.04725 * 15 5 4 37 37 H 1.09001 * 109.47142 * 306.04983 * 15 5 4 38 38 H 1.08996 * 109.47117 * 300.00947 * 16 15 5 39 39 H 1.09001 * 109.46537 * 60.00349 * 16 15 5 40 40 H 1.09000 * 109.88178 * 300.51085 * 20 19 17 41 41 H 1.08996 * 109.88212 * 61.67579 * 20 19 17 42 42 H 1.08999 * 110.92552 * 264.10954 * 21 20 19 43 43 H 1.09009 * 110.59024 * 140.78384 * 21 20 19 44 44 H 1.09003 * 111.00194 * 206.22454 * 22 21 20 45 45 H 1.08993 * 111.00346 * 82.37751 * 22 21 20 46 46 H 1.09001 * 110.37024 * 274.67759 * 23 19 17 47 47 H 1.09000 * 110.37147 * 36.88842 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5549 -2.1077 1.2465 6 6 2.3326 -2.9357 0.3150 7 6 1.8411 -2.7066 -1.0911 8 1 1.0546 -1.9906 -1.2783 9 6 2.3958 -3.4111 -2.1386 10 7 3.3533 -4.2832 -1.9107 11 14 1.7871 -3.1266 -3.8816 12 1 0.7124 -2.1017 -3.8696 13 1 2.9120 -2.6537 -4.7278 14 1 1.2532 -4.3979 -4.4331 15 6 1.5777 -2.6762 2.6008 16 6 0.5664 -1.9385 3.4806 17 6 0.5902 -2.5213 4.8701 18 8 1.3423 -3.4362 5.1313 19 7 -0.2244 -2.0256 5.8227 20 6 -1.1763 -0.9193 5.6455 21 6 -1.8670 -0.6867 7.0057 22 6 -0.8550 -1.2911 8.0147 23 6 -0.3035 -2.4986 7.2168 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6733 -0.2098 2.1391 32 1 3.1301 -0.7176 1.2513 33 1 3.3863 -2.6642 0.3803 34 1 2.2114 -3.9872 0.5753 35 1 3.7432 -4.7791 -2.6475 36 1 1.3168 -3.7335 2.5556 37 1 2.5760 -2.5661 3.0243 38 1 0.8273 -0.8812 3.5258 39 1 -0.4319 -2.0486 3.0571 40 1 -0.6448 -0.0185 5.3387 41 1 -1.9202 -1.1870 4.8952 42 1 -2.8202 -1.2131 7.0533 43 1 -2.0042 0.3791 7.1887 44 1 -1.3588 -1.6204 8.9235 45 1 -0.0616 -0.5804 8.2454 46 1 -0.9850 -3.3459 7.2919 47 1 0.6862 -2.7754 7.5802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838855690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = -43.849853 kcal Electronic energy + Delta-G solvation = -23148.751779 eV Core-core repulsion = 19945.016192 eV Total energy + Delta-G solvation = -3203.735587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04064 -37.83619 -37.12366 -33.89955 -32.73149 -31.95104 -30.34817 -29.10529 -26.93059 -26.46909 -25.36684 -23.83331 -22.22065 -21.38006 -20.49010 -19.25206 -18.86072 -17.10225 -16.75112 -16.27179 -15.54215 -15.04806 -14.75684 -14.44767 -13.94119 -13.83561 -13.64568 -13.45793 -13.25376 -12.86814 -12.54909 -12.32053 -12.27708 -12.13479 -11.77625 -11.70992 -11.55043 -11.47566 -11.12232 -11.08093 -11.03768 -10.77061 -10.50590 -10.47405 -10.21566 -10.14763 -9.86157 -9.68454 -9.31085 -9.00937 -8.72345 -8.33266 -7.19152 -5.95407 -3.94812 2.75477 2.93496 3.34118 3.41966 3.45804 4.20006 4.29906 4.46672 4.58691 4.77625 4.98010 5.08470 5.15843 5.32172 5.37262 5.39056 5.41348 5.48175 5.53329 5.60498 5.63981 5.68668 5.73381 5.83663 5.90636 5.98531 6.09045 6.20513 6.23624 6.27396 6.41094 6.42523 6.52580 6.59634 6.70744 6.81417 7.17497 7.26963 7.38217 7.43228 7.47358 7.92515 8.18175 8.26442 8.29161 8.61220 9.12522 9.67418 11.15175 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.003869 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.158501 B = 7235.560126 C = 7932.315603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C -0.144 4.144 4 C 0.072 3.928 5 N -0.534 5.534 6 C 0.192 3.808 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.052 3.948 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.073 3.927 16 C -0.130 4.130 17 C 0.530 3.470 18 O -0.538 6.538 19 N -0.627 5.627 20 C 0.100 3.900 21 C -0.132 4.132 22 C -0.134 4.134 23 C 0.103 3.897 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.109 0.891 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.023 0.977 33 H -0.007 1.007 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 10.461 16.359 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.056 4.056 5 N -0.258 5.258 6 C 0.067 3.933 7 C -0.539 4.539 8 H 0.095 0.905 9 C -0.149 4.149 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.056 4.056 16 C -0.170 4.170 17 C 0.320 3.680 18 O -0.414 6.414 19 N -0.363 5.363 20 C -0.023 4.023 21 C -0.170 4.170 22 C -0.172 4.172 23 C -0.019 4.019 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.011 0.989 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.900 9.792 16.159 21.331 hybrid contribution 0.571 0.111 -0.655 0.876 sum -9.328 9.903 15.504 20.627 Atomic orbital electron populations 1.21636 0.95703 1.02523 0.98702 1.21412 0.95999 0.93898 1.01137 1.21838 1.00475 0.97452 1.00387 1.22023 0.96530 0.90198 0.96842 1.62099 1.56546 1.01918 1.05286 1.19806 0.90594 0.92194 0.90670 1.21423 1.19624 1.22264 0.90619 0.90526 1.25020 0.95306 0.95386 0.99140 1.69976 1.26327 1.25942 1.31660 0.86539 0.78649 0.78032 0.84827 1.19547 1.21270 1.21172 1.21733 0.95791 0.98823 0.89279 1.21708 1.03506 1.01181 0.90572 1.20710 0.78420 0.82463 0.86422 1.90707 1.39413 1.29355 1.81926 1.48604 1.40521 1.36167 1.11043 1.22031 0.92022 0.90035 0.98261 1.22641 0.98648 1.01947 0.93768 1.22786 0.98980 0.97450 0.98012 1.22176 1.01801 0.96606 0.81331 0.90762 0.94860 0.94647 0.87285 0.93417 0.93323 0.93996 0.93394 0.95842 0.98924 0.95435 0.93127 0.90597 0.95436 0.89277 0.88271 0.91252 0.91061 0.90455 0.89985 0.89898 0.90632 0.91648 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.53 37.16 0.32 -1.84 16 2 C -0.11 -1.93 2.42 -90.62 -0.22 -2.15 16 3 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 4 C 0.07 1.36 4.30 -3.83 -0.02 1.34 16 5 N -0.53 -11.23 3.65 -236.07 -0.86 -12.09 16 6 C 0.19 5.00 4.80 -4.97 -0.02 4.97 16 7 C -0.50 -13.60 7.43 -34.44 -0.26 -13.86 16 8 H 0.08 2.01 4.91 -52.49 -0.26 1.75 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 11 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.07 1.40 4.21 -3.82 -0.02 1.38 16 16 C -0.13 -1.94 4.87 -27.88 -0.14 -2.07 16 17 C 0.53 8.24 7.85 -10.98 -0.09 8.15 16 18 O -0.54 -10.51 16.24 5.56 0.09 -10.42 16 19 N -0.63 -7.47 3.33 -170.55 -0.57 -8.04 16 20 C 0.10 0.84 6.48 -3.07 -0.02 0.82 16 21 C -0.13 -0.79 6.95 -24.90 -0.17 -0.97 16 22 C -0.13 -0.88 7.08 -24.60 -0.17 -1.06 16 23 C 0.10 1.03 6.91 -2.55 -0.02 1.02 16 24 H 0.07 1.41 6.99 -51.93 -0.36 1.05 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 2.40 5.16 -51.93 -0.27 2.13 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.78 5.86 -51.93 -0.30 0.47 16 32 H 0.02 0.47 7.65 -51.93 -0.40 0.08 16 33 H -0.01 -0.20 7.63 -51.93 -0.40 -0.59 16 34 H 0.03 0.78 7.66 -51.93 -0.40 0.38 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.59 7.76 -51.93 -0.40 1.18 16 37 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.09 1.20 6.24 -51.93 -0.32 0.88 16 39 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -31.82 363.95 -9.29 -41.11 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.58 Total: -1.69 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.58 Total: -4.72 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.69 Total: -46.28 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.82 -9.29 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838855690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.735 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds