Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 C 1.52999 * 109.47655 * 120.00241 * 2 1 3 5 5 N 1.46891 * 109.46986 * 60.95112 * 4 2 1 6 6 C 1.46906 * 110.99956 * 73.40535 * 5 4 2 7 7 C 1.50692 * 109.47066 * 279.63318 * 6 5 4 8 8 H 1.07995 * 120.00418 * 2.96464 * 7 6 5 9 9 C 1.37876 * 119.99939 * 182.96154 * 7 6 5 10 10 N 1.31515 * 119.99933 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00460 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46775 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47160 * 120.00050 * 11 9 7 14 14 H 1.48501 * 109.47304 * 240.00358 * 11 9 7 15 15 C 1.46908 * 111.00113 * 197.35812 * 5 4 2 16 16 N 1.46498 * 109.46707 * 81.05143 * 15 5 4 17 17 C 1.46759 * 124.35244 * 90.00128 * 16 15 5 18 18 C 1.54481 * 105.54839 * 197.07185 * 17 16 15 19 19 C 1.54625 * 101.76754 * 334.54154 * 18 17 16 20 20 C 1.53001 * 110.48391 * 143.47588 * 19 18 17 21 21 C 1.53004 * 110.48586 * 266.11727 * 19 18 17 22 22 C 1.34630 * 124.46419 * 270.02140 * 16 15 5 23 23 O 1.21278 * 124.90646 * 359.56224 * 22 16 15 24 24 H 1.09001 * 109.47496 * 59.99876 * 1 2 3 25 25 H 1.09006 * 109.47097 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47323 * 299.99571 * 1 2 3 27 27 H 1.09004 * 109.47323 * 240.00429 * 2 1 3 28 28 H 1.08989 * 109.47432 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47086 * 300.00376 * 3 2 1 30 30 H 1.09004 * 109.46721 * 60.00060 * 3 2 1 31 31 H 1.09000 * 109.46521 * 300.95482 * 4 2 1 32 32 H 1.08996 * 109.47584 * 180.95755 * 4 2 1 33 33 H 1.08998 * 109.46788 * 39.63527 * 6 5 4 34 34 H 1.09001 * 109.46876 * 159.63227 * 6 5 4 35 35 H 0.97001 * 120.00440 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.46890 * 321.04751 * 15 5 4 37 37 H 1.08998 * 109.46995 * 201.04614 * 15 5 4 38 38 H 1.09002 * 110.24145 * 78.03205 * 17 16 15 39 39 H 1.08995 * 110.25040 * 316.12065 * 17 16 15 40 40 H 1.08996 * 110.96600 * 92.66349 * 18 17 16 41 41 H 1.09005 * 110.96795 * 216.38232 * 18 17 16 42 42 H 1.08994 * 109.47273 * 60.00034 * 20 19 18 43 43 H 1.09001 * 109.46930 * 180.02562 * 20 19 18 44 44 H 1.09001 * 109.47199 * 299.99428 * 20 19 18 45 45 H 1.08999 * 109.46771 * 60.00527 * 21 19 18 46 46 H 1.09003 * 109.46484 * 179.97438 * 21 19 18 47 47 H 1.08997 * 109.47022 * 299.99715 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5694 -2.1127 1.2377 6 6 2.3010 -2.9078 0.2424 7 6 1.7218 -2.6562 -1.1258 8 1 0.9248 -1.9382 -1.2512 9 6 2.2092 -3.3427 -2.2177 10 7 3.1793 -4.2174 -2.0650 11 14 1.4907 -3.0314 -3.9137 12 1 0.4173 -2.0097 -3.8166 13 1 2.5592 -2.5430 -4.8218 14 1 0.9239 -4.2946 -4.4506 15 6 1.6746 -2.7151 2.5734 16 7 0.5259 -2.3062 3.3854 17 6 -0.7418 -3.0423 3.4568 18 6 -1.7651 -2.0480 4.0490 19 6 -0.8495 -1.0906 4.8465 20 6 -1.3715 0.3450 4.7604 21 6 -0.7482 -1.5384 6.3060 22 6 0.4948 -1.2072 4.1624 23 8 1.4115 -0.4242 4.2941 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1298 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6628 -0.2174 2.1390 32 1 3.1299 -0.7064 1.2578 33 1 3.3526 -2.6210 0.2501 34 1 2.2113 -3.9664 0.4859 35 1 3.5221 -4.7006 -2.8330 36 1 2.5952 -2.3803 3.0514 37 1 1.6868 -3.8012 2.4821 38 1 -0.6379 -3.9097 4.1087 39 1 -1.0530 -3.3552 2.4602 40 1 -2.2931 -1.5147 3.2586 41 1 -2.4670 -2.5576 4.7092 42 1 -2.3785 0.3909 5.1749 43 1 -0.7146 1.0050 5.3270 44 1 -1.3928 0.6620 3.7177 45 1 -0.3316 -2.5447 6.3492 46 1 -0.0995 -0.8533 6.8520 47 1 -1.7407 -1.5363 6.7564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839967061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -40.007417 kcal Electronic energy + Delta-G solvation = -24345.928279 eV Core-core repulsion = 21142.359312 eV Total energy + Delta-G solvation = -3203.568967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54534 -37.37075 -36.22979 -34.57297 -33.20221 -32.22915 -29.17781 -27.46298 -27.22297 -26.39701 -26.12474 -24.32226 -23.43434 -21.25239 -20.52705 -18.97207 -18.61098 -16.66073 -16.26197 -15.80135 -15.28164 -14.85330 -14.61287 -14.15618 -13.94137 -13.89329 -13.45479 -13.28657 -13.06995 -12.73336 -12.48161 -12.24415 -12.22818 -12.07399 -11.98782 -11.69963 -11.61127 -11.42896 -11.24720 -11.05609 -10.89464 -10.75685 -10.67258 -10.49694 -10.16948 -10.11996 -9.90179 -9.46449 -9.34506 -9.04180 -8.45293 -8.37144 -7.29366 -6.02265 -4.01102 2.85823 3.30134 3.35188 3.38505 3.43087 4.30771 4.42623 4.50214 4.75516 4.97445 5.02479 5.14252 5.31986 5.37578 5.49632 5.58628 5.64910 5.68038 5.71509 5.76499 5.77786 5.80504 5.92542 5.94117 5.98504 6.04186 6.09069 6.19741 6.21970 6.34539 6.47440 6.50628 6.60987 6.74699 6.80517 6.87485 7.14001 7.21943 7.31468 7.45421 7.48691 7.86855 8.08968 8.21247 8.46587 8.58214 9.06172 9.61214 11.08046 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.005229 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.712814 B = 5353.117131 C = 5769.604466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.073 3.927 5 N -0.546 5.546 6 C 0.196 3.804 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.288 3.712 16 N -0.600 5.600 17 C 0.105 3.895 18 C -0.124 4.124 19 C -0.099 4.099 20 C -0.127 4.127 21 C -0.128 4.128 22 C 0.525 3.475 23 O -0.534 6.534 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.019 0.981 33 H -0.005 1.005 34 H 0.027 0.973 35 H 0.259 0.741 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 4.257 12.965 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.055 4.055 5 N -0.272 5.272 6 C 0.071 3.929 7 C -0.539 4.539 8 H 0.096 0.904 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.720 3.280 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.212 1.212 15 C 0.077 3.923 16 N -0.334 5.334 17 C -0.019 4.019 18 C -0.162 4.162 19 C -0.103 4.103 20 C -0.185 4.185 21 C -0.186 4.186 22 C 0.312 3.688 23 O -0.411 6.411 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.127 0.873 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.567 4.491 12.741 16.553 hybrid contribution 0.569 -0.048 -0.882 1.051 sum -8.998 4.443 11.858 15.535 Atomic orbital electron populations 1.21606 0.95854 1.02239 0.98481 1.21424 0.95916 0.94022 1.01027 1.21820 1.00406 0.97502 1.00349 1.22085 0.96253 0.89182 0.97989 1.61840 1.58621 1.02574 1.04195 1.19780 0.91332 0.92143 0.89673 1.21434 1.19109 1.22515 0.90862 0.90379 1.25001 0.95260 0.95298 0.99167 1.69965 1.27151 1.26331 1.30519 0.86534 0.79066 0.78065 0.84370 1.19549 1.21208 1.21158 1.21801 0.85588 0.97899 0.87051 1.48503 1.15695 1.25308 1.43890 1.22006 0.83269 0.94418 1.02179 1.22757 0.97014 0.96743 0.99690 1.21380 0.94443 0.97802 0.96656 1.21651 1.00667 0.93571 1.02621 1.21667 1.02339 1.01513 0.93056 1.20732 0.88836 0.80312 0.78932 1.90660 1.41410 1.44214 1.64807 0.94753 0.90953 0.95106 0.87285 0.93474 0.93410 0.93926 0.91666 0.96241 0.98744 0.95496 0.93091 0.93252 0.89575 0.91703 0.89628 0.89880 0.89609 0.91940 0.91855 0.92199 0.92327 0.91952 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.40 37.16 0.31 -2.02 16 2 C -0.11 -2.11 2.40 -90.62 -0.22 -2.33 16 3 C -0.14 -2.48 9.19 37.16 0.34 -2.14 16 4 C 0.07 1.52 4.26 -3.83 -0.02 1.50 16 5 N -0.55 -11.47 3.80 -239.99 -0.91 -12.39 16 6 C 0.20 4.87 4.78 -4.98 -0.02 4.84 16 7 C -0.50 -13.26 7.24 -34.44 -0.25 -13.51 16 8 H 0.08 2.03 4.57 -52.49 -0.24 1.79 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 11 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.29 5.27 5.77 -63.31 -0.37 4.91 16 16 N -0.60 -9.46 3.15 -175.85 -0.55 -10.02 16 17 C 0.10 1.27 7.34 -3.12 -0.02 1.24 16 18 C -0.12 -1.24 6.23 -25.10 -0.16 -1.39 16 19 C -0.10 -1.16 0.91 -154.52 -0.14 -1.30 16 20 C -0.13 -1.41 8.42 37.16 0.31 -1.10 16 21 C -0.13 -1.24 8.52 37.16 0.32 -0.92 16 22 C 0.53 8.49 6.12 -10.77 -0.07 8.43 16 23 O -0.53 -10.56 15.65 5.56 0.09 -10.47 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.48 6.73 -51.93 -0.35 1.13 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.11 2.52 5.14 -51.93 -0.27 2.25 16 28 H 0.05 0.80 8.14 -51.94 -0.42 0.38 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.37 5.22 -51.93 -0.27 1.10 16 32 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 33 H -0.01 -0.14 7.67 -51.93 -0.40 -0.54 16 34 H 0.03 0.70 7.44 -51.93 -0.39 0.32 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.05 0.96 7.71 -51.93 -0.40 0.55 16 37 H 0.09 1.50 7.44 -51.93 -0.39 1.11 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 41 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -30.21 361.40 -8.84 -39.05 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.55 Total: -0.10 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.41 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.73 Total: -47.71 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.21 -8.84 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839967061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.955 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds