Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47125 * 2 1 4 4 C 1.52998 * 109.47169 * 120.00091 * 2 1 3 5 5 N 1.46496 * 109.47528 * 175.00340 * 4 2 1 6 6 C 1.46491 * 120.00453 * 89.99575 * 5 4 2 7 7 C 1.50702 * 109.46957 * 90.00133 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.34780 * 119.99526 * 270.00078 * 5 4 2 16 16 O 1.21285 * 119.99673 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00400 * 359.97438 * 15 5 4 18 18 H 1.09002 * 109.45561 * 40.02397 * 17 15 5 19 19 C 1.53035 * 109.46706 * 280.05615 * 17 15 5 20 20 C 1.53112 * 109.28024 * 180.79905 * 19 17 15 21 21 C 1.53119 * 109.15792 * 57.65751 * 20 19 17 22 22 C 1.53030 * 109.28007 * 302.34233 * 21 20 19 23 23 N 1.46845 * 109.46503 * 160.00099 * 17 15 5 24 24 C 1.46902 * 110.99934 * 305.85655 * 23 17 15 25 25 H 1.09001 * 109.47212 * 299.99744 * 1 2 3 26 26 H 1.09000 * 109.47220 * 59.99857 * 1 2 3 27 27 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47012 * 239.99741 * 2 1 3 29 29 H 1.09003 * 109.46878 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47131 * 299.99633 * 3 2 1 31 31 H 1.09001 * 109.46867 * 60.00044 * 3 2 1 32 32 H 1.09005 * 109.47023 * 54.99554 * 4 2 1 33 33 H 1.09006 * 109.47021 * 295.00352 * 4 2 1 34 34 H 1.09004 * 109.47166 * 330.00399 * 6 5 4 35 35 H 1.08994 * 109.47507 * 210.00106 * 6 5 4 36 36 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.50227 * 300.74606 * 19 17 15 38 38 H 1.09005 * 109.49867 * 60.85910 * 19 17 15 39 39 H 1.08999 * 109.52774 * 297.74845 * 20 19 17 40 40 H 1.09001 * 109.57529 * 177.59031 * 20 19 17 41 41 H 1.09000 * 109.50246 * 182.40101 * 21 20 19 42 42 H 1.09004 * 109.50490 * 62.28430 * 21 20 19 43 43 H 1.09002 * 109.46155 * 299.16849 * 22 21 20 44 44 H 1.08995 * 109.46593 * 179.19805 * 22 21 20 45 45 H 1.09001 * 109.46923 * 60.00087 * 24 23 17 46 46 H 1.09005 * 109.47271 * 179.97438 * 24 23 17 47 47 H 1.08998 * 109.47463 * 300.00150 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1907 6 6 4.3342 0.2340 1.7613 7 6 4.6219 -0.0768 3.2076 8 1 4.2235 -0.9746 3.6567 9 6 5.3990 0.7820 3.9559 10 7 5.8844 1.8751 3.4090 11 14 5.7619 0.3929 5.7464 12 1 6.4754 -0.9065 5.8359 13 1 6.6116 1.4654 6.3236 14 1 4.4870 0.3108 6.5036 15 6 4.0756 -1.8987 0.6116 16 8 5.2844 -1.9855 0.5627 17 6 3.2175 -2.9898 0.0250 18 1 2.3628 -2.5450 -0.4847 19 6 2.7222 -3.9070 1.1454 20 6 1.8674 -5.0252 0.5426 21 6 2.6988 -5.7926 -0.4892 22 6 3.1948 -4.8208 -1.5622 23 7 4.0076 -3.7707 -0.9353 24 6 4.6147 -2.8989 -1.9499 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7515 -0.1583 2.1370 34 1 3.8090 1.1866 1.6919 35 1 5.2721 0.2952 1.2094 36 1 6.4308 2.4794 3.9355 37 1 3.5765 -4.3415 1.6644 38 1 2.1227 -3.3301 1.8496 39 1 0.9923 -4.5934 0.0569 40 1 1.5473 -5.7059 1.3315 41 1 2.0826 -6.5630 -0.9527 42 1 3.5528 -6.2568 0.0042 43 1 2.3402 -4.3673 -2.0644 44 1 3.7989 -5.3615 -2.2906 45 1 5.2704 -2.1769 -1.4631 46 1 5.1946 -3.5027 -2.6480 47 1 3.8302 -2.3701 -2.4910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874231257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = -43.310858 kcal Electronic energy + Delta-G solvation = -24439.168956 eV Core-core repulsion = 21235.456741 eV Total energy + Delta-G solvation = -3203.712215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07394 -37.77547 -36.28066 -33.67545 -33.22854 -32.30996 -31.02772 -27.79610 -26.84010 -26.61733 -25.45383 -23.94693 -22.88215 -22.02844 -20.31738 -19.64112 -18.35775 -16.53518 -16.36456 -16.04402 -15.14471 -14.81644 -14.57748 -14.51869 -14.22954 -13.91208 -13.87696 -13.48591 -12.97746 -12.79668 -12.73646 -12.27714 -12.18033 -12.05146 -11.88238 -11.57704 -11.48075 -11.32790 -11.14139 -10.98896 -10.89195 -10.76351 -10.71615 -10.60825 -10.42584 -10.27736 -10.23857 -10.07027 -9.54762 -8.69221 -8.38605 -8.08033 -7.55558 -6.00769 -4.04767 3.33892 3.38392 3.39980 3.45925 3.73874 4.24058 4.48099 4.81623 4.84177 4.95896 5.03742 5.14625 5.21814 5.27877 5.32993 5.33778 5.41504 5.51397 5.61247 5.65391 5.70684 5.72730 5.80372 5.82918 5.86800 5.92314 5.99672 6.09223 6.11867 6.14410 6.17082 6.22811 6.30666 6.37622 6.45413 6.56128 6.69081 7.04873 7.22175 7.28866 7.48495 7.61729 7.96329 8.28587 8.48633 8.94887 9.18109 9.60062 11.07069 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.006024 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.971215 B = 4646.593021 C = 5383.539522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.111 3.889 5 N -0.594 5.594 6 C 0.244 3.756 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.510 3.490 16 O -0.523 6.523 17 C 0.070 3.930 18 H 0.055 0.945 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.118 4.118 22 C 0.057 3.943 23 N -0.519 5.519 24 C 0.017 3.983 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 -9.256 -9.382 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.205 4.205 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.125 3.875 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.296 3.704 16 O -0.399 6.399 17 C -0.042 4.042 18 H 0.073 0.927 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.071 4.071 23 N -0.244 5.244 24 C -0.131 4.131 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.097 -9.334 -9.095 17.116 hybrid contribution -0.495 0.304 0.555 0.803 sum -11.591 -9.030 -8.540 16.995 Atomic orbital electron populations 1.21779 0.95199 1.01299 1.01815 1.21587 0.95271 0.97680 0.98789 1.21924 1.02679 0.94949 1.00964 1.21642 0.81671 1.00161 0.97896 1.48201 1.05936 1.21865 1.56571 1.19375 0.90519 0.84407 0.93207 1.21420 1.31852 1.07444 0.95625 0.92600 1.24913 0.95514 0.95009 0.98591 1.69920 1.34791 1.12060 1.36691 0.86597 0.78263 0.78057 0.84727 1.20200 1.21227 1.20309 1.20087 0.88612 0.82482 0.79261 1.90639 1.14357 1.77422 1.57471 1.21674 0.94359 0.93517 0.94666 0.92722 1.21584 1.00266 0.96338 0.96584 1.21574 0.97849 0.97526 0.98603 1.21603 0.99889 0.97384 0.96694 1.22109 0.95478 0.93402 0.96121 1.61589 1.33000 1.13516 1.16339 1.22570 0.98956 0.97433 0.94144 0.92378 0.92877 0.93022 0.91982 0.91239 0.93685 0.92439 0.91489 0.89919 0.94218 0.94181 0.92746 0.90318 0.90739 0.92305 0.91522 0.91732 0.90902 0.95341 0.90736 0.88832 0.91748 0.96626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.22 16 2 C -0.11 -1.59 2.94 -90.62 -0.27 -1.85 16 3 C -0.15 -2.27 8.18 37.16 0.30 -1.96 16 4 C 0.11 1.81 4.49 -4.04 -0.02 1.79 16 5 N -0.59 -12.44 2.28 -175.06 -0.40 -12.84 16 6 C 0.24 6.28 4.23 -5.20 -0.02 6.26 16 7 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 11 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.51 10.77 6.11 -10.98 -0.07 10.71 16 16 O -0.52 -13.37 14.10 5.55 0.08 -13.29 16 17 C 0.07 1.13 1.40 -68.88 -0.10 1.04 16 18 H 0.06 0.82 6.19 -51.93 -0.32 0.50 16 19 C -0.11 -1.59 5.10 -26.66 -0.14 -1.73 16 20 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 21 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 22 C 0.06 0.69 5.46 -3.84 -0.02 0.66 16 23 N -0.52 -8.21 4.51 -236.33 -1.07 -9.28 16 24 C 0.02 0.26 9.10 60.07 0.55 0.81 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.89 7.27 -51.93 -0.38 0.51 16 29 H 0.07 1.27 5.89 -51.93 -0.31 0.96 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.95 4.75 -51.93 -0.25 0.70 16 33 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 35 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.05 6.32 -51.93 -0.33 0.72 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 45 H 0.09 1.78 5.62 -51.93 -0.29 1.49 16 46 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 47 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -32.02 355.70 -8.93 -40.96 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.44 Total: -0.17 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.18 Total: -1.89 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.73 Total: -47.97 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.02 -8.93 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874231257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.355 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds