Wall clock time and date at job start Tue Mar 31 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 C 1.53000 * 109.47190 * 120.00690 * 2 1 3 5 5 C 1.52994 * 109.47470 * 64.99484 * 4 2 1 6 6 N 1.46495 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.46507 * 119.99975 * 270.00407 * 6 5 4 8 8 C 1.50699 * 109.47025 * 269.99402 * 7 6 5 9 9 H 1.08002 * 119.99991 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00069 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99902 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00186 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47188 * 89.99550 * 12 10 8 14 14 H 1.48500 * 109.47416 * 209.99949 * 12 10 8 15 15 H 1.48502 * 109.47002 * 329.99939 * 12 10 8 16 16 C 1.34773 * 119.99906 * 89.99926 * 6 5 4 17 17 O 1.21276 * 120.00151 * 0.02562 * 16 6 5 18 18 C 1.50706 * 119.99959 * 180.02562 * 16 6 5 19 19 N 1.46905 * 109.47059 * 180.02562 * 18 16 6 20 20 C 1.48560 * 110.99577 * 189.99748 * 19 18 16 21 21 C 1.54378 * 104.69549 * 200.89794 * 20 19 18 22 22 C 1.54571 * 104.91190 * 23.88545 * 21 20 19 23 23 C 1.48555 * 110.99889 * 74.58229 * 19 18 16 24 24 H 1.09001 * 109.47652 * 59.99680 * 1 2 3 25 25 H 1.08997 * 109.47404 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47391 * 299.99870 * 1 2 3 27 27 H 1.09007 * 109.46903 * 240.00025 * 2 1 3 28 28 H 1.08999 * 109.46872 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46771 * 300.00287 * 3 2 1 30 30 H 1.08997 * 109.46577 * 60.00100 * 3 2 1 31 31 H 1.08995 * 109.46553 * 304.99568 * 4 2 1 32 32 H 1.09001 * 109.47081 * 185.00177 * 4 2 1 33 33 H 1.09004 * 109.47149 * 59.99867 * 5 4 2 34 34 H 1.09001 * 109.47535 * 300.00416 * 5 4 2 35 35 H 1.09001 * 109.46986 * 29.99619 * 7 6 5 36 36 H 1.09004 * 109.46761 * 149.99696 * 7 6 5 37 37 H 0.97008 * 119.99704 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47305 * 60.00018 * 18 16 6 39 39 H 1.08997 * 109.46731 * 300.00115 * 18 16 6 40 40 H 1.09002 * 110.41441 * 319.73871 * 20 19 18 41 41 H 1.09002 * 110.41248 * 82.06172 * 20 19 18 42 42 H 1.09006 * 110.32557 * 142.80924 * 21 20 19 43 43 H 1.08996 * 110.32821 * 265.02105 * 21 20 19 44 44 H 1.08995 * 110.29758 * 241.08109 * 22 21 20 45 45 H 1.09004 * 110.40408 * 118.93657 * 22 21 20 46 46 H 1.09005 * 110.41154 * 277.81401 * 23 19 18 47 47 H 1.08998 * 110.41848 * 40.13562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6352 -2.1955 1.1878 6 7 2.1230 -2.8861 2.3842 7 6 3.4513 -3.5042 2.3828 8 6 3.3407 -4.9314 1.9117 9 1 2.3774 -5.3373 1.6401 10 6 4.4694 -5.7186 1.8264 11 7 4.3729 -6.9640 1.4148 12 14 6.1356 -5.0164 2.2955 13 1 6.3828 -5.2517 3.7407 14 1 7.1960 -5.6821 1.4970 15 1 6.1525 -3.5569 2.0217 16 6 1.3498 -2.9528 3.4861 17 8 0.2501 -2.4415 3.4871 18 6 1.8519 -3.6627 4.7170 19 7 0.8309 -3.5963 5.7712 20 6 1.3750 -4.0706 7.0697 21 6 0.1307 -4.4537 7.8992 22 6 -0.9674 -4.7541 6.8536 23 6 -0.2916 -4.5261 5.4845 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -0.2619 2.1368 32 1 3.1263 -0.6444 1.2951 33 1 2.0697 -2.6550 0.3000 34 1 0.5489 -2.2725 1.1419 35 1 4.1090 -2.9503 1.7129 36 1 3.8617 -3.4856 3.3924 37 1 5.1670 -7.5180 1.3552 38 1 2.7664 -3.1829 5.0656 39 1 2.0578 -4.7056 4.4763 40 1 2.0142 -4.9406 6.9192 41 1 1.9302 -3.2729 7.5634 42 1 0.3349 -5.3391 8.5014 43 1 -0.1700 -3.6224 8.5369 44 1 -1.8069 -4.0706 6.9800 45 1 -1.3042 -5.7870 6.9423 46 1 -0.9932 -4.0708 4.7854 47 1 0.0865 -5.4666 5.0838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874358514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:54 Heat of formation + Delta-G solvation = -48.219030 kcal Electronic energy + Delta-G solvation = -23401.554407 eV Core-core repulsion = 20197.629358 eV Total energy + Delta-G solvation = -3203.925049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.49722 -38.05058 -36.44365 -34.75551 -32.54122 -32.02284 -29.56479 -28.59947 -27.60029 -27.02847 -26.03556 -22.95966 -22.43968 -20.85450 -20.62977 -19.77772 -18.22082 -17.07397 -16.44356 -15.95603 -15.54988 -15.03349 -14.91252 -14.66451 -14.08509 -13.94865 -13.51463 -13.33733 -13.03098 -12.75114 -12.57969 -12.37413 -12.10468 -12.06658 -11.89420 -11.76042 -11.59076 -11.27999 -11.06712 -11.03276 -10.93803 -10.86079 -10.78235 -10.64579 -10.43888 -10.34244 -10.24339 -10.13395 -9.64806 -9.01847 -8.75411 -8.11434 -7.68610 -6.25198 -4.26918 3.13808 3.22691 3.23719 3.43117 3.71417 4.23066 4.42198 4.83723 4.90460 5.03366 5.06167 5.10863 5.12778 5.15966 5.37949 5.50173 5.62661 5.70703 5.72595 5.75625 5.82452 5.87830 5.88839 5.92763 5.95409 5.97613 6.00789 6.03516 6.10401 6.20694 6.26434 6.29276 6.32662 6.37706 6.39572 6.48439 6.59188 6.63476 6.70691 7.12731 7.18398 7.39882 7.45197 8.15047 8.41610 8.80145 9.03077 9.34620 10.87424 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.008956 B = 0.007046 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.480952 B = 3972.965095 C = 6381.283164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.121 3.879 6 N -0.594 5.594 7 C 0.209 3.791 8 C -0.541 4.541 9 H 0.077 0.923 10 C 0.076 3.924 11 N -0.891 5.891 12 Si 0.870 3.130 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.523 3.477 17 O -0.552 6.552 18 C 0.026 3.974 19 N -0.494 5.494 20 C 0.029 3.971 21 C -0.121 4.121 22 C -0.123 4.123 23 C 0.033 3.967 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 9.062 5.384 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.002 4.002 6 N -0.325 5.325 7 C 0.087 3.913 8 C -0.579 4.579 9 H 0.096 0.904 10 C -0.128 4.128 11 N -0.528 5.528 12 Si 0.697 3.303 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.310 3.690 17 O -0.431 6.431 18 C -0.104 4.104 19 N -0.218 5.218 20 C -0.099 4.099 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.095 4.095 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.061 9.710 5.349 12.187 hybrid contribution 1.556 -0.791 0.031 1.746 sum -3.506 8.918 5.380 10.990 Atomic orbital electron populations 1.21868 0.95261 1.02128 1.01140 1.21051 0.95948 0.95851 0.98464 1.21821 1.00786 0.96259 1.01319 1.22002 1.00781 0.96098 0.97772 1.21347 1.00098 0.90774 0.87985 1.47896 1.18571 1.53914 1.12141 1.19784 0.79943 0.94290 0.97267 1.21399 0.96395 0.94372 1.45778 0.90449 1.24886 0.98843 0.94630 0.94406 1.69898 1.29861 1.06968 1.46106 0.86934 0.84274 0.79974 0.79128 1.19898 1.20831 1.18795 1.20202 0.84768 0.79717 0.84278 1.90581 1.20870 1.48037 1.83576 1.22167 0.95280 1.01759 0.91240 1.65166 1.07427 1.47983 1.01217 1.23133 0.96769 0.99041 0.90996 1.22304 0.95036 1.01007 0.97607 1.22334 0.98239 1.01067 0.94476 1.23163 0.94403 0.94585 0.97303 0.93313 0.92217 0.92737 0.91190 0.92883 0.93040 0.92888 0.91845 0.92131 0.90583 0.90621 0.94836 0.95547 0.92359 0.88716 0.90041 0.93673 0.90362 0.91589 0.91271 0.91270 0.91668 0.89242 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.49 16 3 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 4 C -0.13 -1.99 5.01 -26.73 -0.13 -2.13 16 5 C 0.12 2.22 5.16 -4.05 -0.02 2.19 16 6 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 7 C 0.21 4.59 4.03 -5.19 -0.02 4.57 16 8 C -0.54 -14.15 9.83 -34.44 -0.34 -14.49 16 9 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 10 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 11 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 12 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 16 C 0.52 10.90 7.52 -10.98 -0.08 10.82 16 17 O -0.55 -12.41 14.80 5.56 0.08 -12.33 16 18 C 0.03 0.50 3.87 -4.97 -0.02 0.48 16 19 N -0.49 -8.47 4.98 -231.41 -1.15 -9.62 16 20 C 0.03 0.40 6.45 -2.18 -0.01 0.39 16 21 C -0.12 -1.44 7.02 -25.18 -0.18 -1.61 16 22 C -0.12 -1.58 7.01 -25.18 -0.18 -1.76 16 23 C 0.03 0.55 5.92 -2.19 -0.01 0.53 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.08 1.42 5.84 -51.93 -0.30 1.12 16 35 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 36 H 0.03 0.56 5.87 -51.93 -0.30 0.26 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 38 H 0.09 1.64 7.34 -51.93 -0.38 1.26 16 39 H 0.08 1.65 7.62 -51.93 -0.40 1.25 16 40 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.62 7.24 -51.93 -0.38 1.25 16 47 H 0.04 0.74 7.75 -51.93 -0.40 0.33 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -29.43 366.42 -9.35 -38.78 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.79 Total: 3.65 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.68 Total: -3.37 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.81 Total: -47.23 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.43 -9.35 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.435 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds