Wall clock time and date at job start Tue Mar 31 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 C 1.53000 * 109.47190 * 120.00690 * 2 1 3 5 5 C 1.52994 * 109.47470 * 64.99484 * 4 2 1 6 6 N 1.46495 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.46507 * 119.99975 * 270.00407 * 6 5 4 8 8 C 1.50699 * 109.47025 * 269.99402 * 7 6 5 9 9 H 1.08002 * 119.99991 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00069 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99902 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00186 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47188 * 89.99550 * 12 10 8 14 14 H 1.48500 * 109.47416 * 209.99949 * 12 10 8 15 15 H 1.48502 * 109.47002 * 329.99939 * 12 10 8 16 16 C 1.34773 * 119.99906 * 89.99926 * 6 5 4 17 17 O 1.21276 * 120.00151 * 0.02562 * 16 6 5 18 18 C 1.50706 * 119.99959 * 180.02562 * 16 6 5 19 19 N 1.46905 * 109.47059 * 180.02562 * 18 16 6 20 20 C 1.48560 * 110.99577 * 189.99748 * 19 18 16 21 21 C 1.54378 * 104.69549 * 200.89794 * 20 19 18 22 22 C 1.54571 * 104.91190 * 23.88545 * 21 20 19 23 23 C 1.48555 * 110.99889 * 74.58229 * 19 18 16 24 24 H 1.09001 * 109.47652 * 59.99680 * 1 2 3 25 25 H 1.08997 * 109.47404 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47391 * 299.99870 * 1 2 3 27 27 H 1.09007 * 109.46903 * 240.00025 * 2 1 3 28 28 H 1.08999 * 109.46872 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46771 * 300.00287 * 3 2 1 30 30 H 1.08997 * 109.46577 * 60.00100 * 3 2 1 31 31 H 1.08995 * 109.46553 * 304.99568 * 4 2 1 32 32 H 1.09001 * 109.47081 * 185.00177 * 4 2 1 33 33 H 1.09004 * 109.47149 * 59.99867 * 5 4 2 34 34 H 1.09001 * 109.47535 * 300.00416 * 5 4 2 35 35 H 1.09001 * 109.46986 * 29.99619 * 7 6 5 36 36 H 1.09004 * 109.46761 * 149.99696 * 7 6 5 37 37 H 0.97008 * 119.99704 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47305 * 60.00018 * 18 16 6 39 39 H 1.08997 * 109.46731 * 300.00115 * 18 16 6 40 40 H 1.09002 * 110.41441 * 319.73871 * 20 19 18 41 41 H 1.09002 * 110.41248 * 82.06172 * 20 19 18 42 42 H 1.09006 * 110.32557 * 142.80924 * 21 20 19 43 43 H 1.08996 * 110.32821 * 265.02105 * 21 20 19 44 44 H 1.08995 * 110.29758 * 241.08109 * 22 21 20 45 45 H 1.09004 * 110.40408 * 118.93657 * 22 21 20 46 46 H 1.09005 * 110.41154 * 277.81401 * 23 19 18 47 47 H 1.08998 * 110.41848 * 40.13562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6352 -2.1955 1.1878 6 7 2.1230 -2.8861 2.3842 7 6 3.4513 -3.5042 2.3828 8 6 3.3407 -4.9314 1.9117 9 1 2.3774 -5.3373 1.6401 10 6 4.4694 -5.7186 1.8264 11 7 4.3729 -6.9640 1.4148 12 14 6.1356 -5.0164 2.2955 13 1 6.3828 -5.2517 3.7407 14 1 7.1960 -5.6821 1.4970 15 1 6.1525 -3.5569 2.0217 16 6 1.3498 -2.9528 3.4861 17 8 0.2501 -2.4415 3.4871 18 6 1.8519 -3.6627 4.7170 19 7 0.8309 -3.5963 5.7712 20 6 1.3750 -4.0706 7.0697 21 6 0.1307 -4.4537 7.8992 22 6 -0.9674 -4.7541 6.8536 23 6 -0.2916 -4.5261 5.4845 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -0.2619 2.1368 32 1 3.1263 -0.6444 1.2951 33 1 2.0697 -2.6550 0.3000 34 1 0.5489 -2.2725 1.1419 35 1 4.1090 -2.9503 1.7129 36 1 3.8617 -3.4856 3.3924 37 1 5.1670 -7.5180 1.3552 38 1 2.7664 -3.1829 5.0656 39 1 2.0578 -4.7056 4.4763 40 1 2.0142 -4.9406 6.9192 41 1 1.9302 -3.2729 7.5634 42 1 0.3349 -5.3391 8.5014 43 1 -0.1700 -3.6224 8.5369 44 1 -1.8069 -4.0706 6.9800 45 1 -1.3042 -5.7870 6.9423 46 1 -0.9932 -4.0708 4.7854 47 1 0.0865 -5.4666 5.0838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874358514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:53 Heat of formation + Delta-G solvation = -65.812703 kcal Electronic energy + Delta-G solvation = -23402.317326 eV Core-core repulsion = 20197.629358 eV Total energy + Delta-G solvation = -3204.687968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06303 -39.35016 -37.72761 -36.40693 -34.51293 -33.31071 -31.04492 -29.75792 -29.38212 -28.01523 -27.39692 -24.61433 -24.06421 -22.14522 -21.70164 -20.90278 -19.86674 -19.09637 -18.03454 -17.43769 -16.83857 -16.48607 -16.30088 -16.04607 -15.74174 -15.23835 -14.77442 -14.64253 -14.48613 -14.31973 -14.06352 -13.79753 -13.63219 -13.24613 -13.13972 -13.04660 -12.80730 -12.77218 -12.54197 -12.40286 -12.23425 -12.15446 -12.08764 -12.01459 -11.80385 -11.63778 -11.54085 -11.42404 -11.36340 -10.84037 -10.62971 -9.51235 -9.37915 -8.32667 -6.40775 1.38152 1.40176 1.49972 1.75069 2.17590 2.32346 3.00886 3.08444 3.63776 3.72351 3.87795 3.95773 3.98740 4.07509 4.14236 4.28752 4.33796 4.36033 4.45651 4.54938 4.64158 4.67597 4.68210 4.71411 4.77377 4.83701 4.85653 4.87444 4.95603 4.98654 5.02912 5.07527 5.12418 5.13928 5.19802 5.28164 5.31971 5.42013 5.46390 5.50620 5.68989 5.85872 5.93697 6.16063 6.59892 6.67463 7.22627 7.37822 8.83750 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.008956 B = 0.007046 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.480952 B = 3972.965095 C = 6381.283164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.115 4.115 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.218 3.782 8 C -0.542 4.542 9 H 0.025 0.975 10 C 0.019 3.981 11 N -0.943 5.943 12 Si 0.941 3.059 13 H -0.260 1.260 14 H -0.285 1.285 15 H -0.237 1.237 16 C 0.516 3.484 17 O -0.573 6.573 18 C 0.034 3.966 19 N -0.506 5.506 20 C 0.024 3.976 21 C -0.114 4.114 22 C -0.117 4.117 23 C 0.030 3.970 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.269 0.731 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 11.006 6.799 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.330 5.330 7 C 0.096 3.904 8 C -0.581 4.581 9 H 0.044 0.956 10 C -0.180 4.180 11 N -0.582 5.582 12 Si 0.763 3.237 13 H -0.185 1.185 14 H -0.210 1.210 15 H -0.160 1.160 16 C 0.304 3.696 17 O -0.453 6.453 18 C -0.097 4.097 19 N -0.230 5.230 20 C -0.103 4.103 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.098 4.098 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.705 11.676 6.769 13.996 hybrid contribution 1.002 -1.460 -0.467 1.831 sum -2.703 10.216 6.302 12.304 Atomic orbital electron populations 1.21845 0.95206 1.01276 1.01863 1.21063 0.95999 0.96963 0.97120 1.21780 1.01091 0.94713 1.02145 1.21884 1.00910 0.93889 0.98674 1.21468 0.99369 0.92587 0.87028 1.48001 1.18292 1.53875 1.12816 1.19628 0.80851 0.91749 0.98155 1.21507 0.94364 0.96608 1.45596 0.95613 1.25814 1.03390 0.94683 0.94099 1.70063 1.31279 1.08873 1.47980 0.85810 0.78135 0.80467 0.79281 1.18473 1.21035 1.16032 1.20656 0.84491 0.79479 0.84967 1.90560 1.21630 1.49031 1.84064 1.22071 0.96470 1.00125 0.91056 1.65176 1.07293 1.48562 1.01996 1.23295 0.97945 0.99517 0.89576 1.22327 0.93224 1.02534 0.97127 1.22328 0.98526 1.02315 0.92348 1.23125 0.94164 0.93367 0.99120 0.91204 0.93871 0.93374 0.90732 0.92374 0.91351 0.92962 0.93109 0.91661 0.91107 0.91801 0.93512 0.93711 0.92226 0.86947 0.92206 0.93857 0.88807 0.89409 0.89857 0.90670 0.90043 0.91893 0.95511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.95 71.98 0.64 -2.92 16 2 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 3 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 4 C -0.11 -3.51 5.01 30.59 0.15 -3.35 16 5 C 0.12 4.41 5.16 86.38 0.45 4.85 16 6 N -0.60 -25.05 2.46 -826.15 -2.03 -27.08 16 7 C 0.22 9.47 4.03 85.63 0.35 9.82 16 8 C -0.54 -29.12 9.83 25.60 0.25 -28.87 16 9 H 0.03 1.61 8.06 -2.91 -0.02 1.58 16 10 C 0.02 1.03 5.47 84.65 0.46 1.49 16 11 N -0.94 -55.96 13.96 21.45 0.30 -55.66 16 12 Si 0.94 39.50 27.47 68.60 1.88 41.39 16 13 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.24 -8.92 6.54 99.48 0.65 -8.27 16 16 C 0.52 21.98 7.52 87.66 0.66 22.64 16 17 O -0.57 -26.55 14.80 -3.02 -0.04 -26.59 16 18 C 0.03 1.28 3.87 85.56 0.33 1.61 16 19 N -0.51 -17.22 4.98 -886.04 -4.41 -21.63 16 20 C 0.02 0.62 6.45 86.45 0.56 1.18 16 21 C -0.11 -2.40 7.02 31.60 0.22 -2.17 16 22 C -0.12 -2.85 7.01 31.60 0.22 -2.63 16 23 C 0.03 1.02 5.92 86.45 0.51 1.53 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.19 6.57 -2.39 -0.02 1.17 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.67 8.07 -2.38 -0.02 2.65 16 34 H 0.06 2.52 5.84 -2.39 -0.01 2.50 16 35 H 0.05 1.93 7.13 -2.39 -0.02 1.92 16 36 H 0.04 1.80 5.87 -2.38 -0.01 1.79 16 37 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 38 H 0.11 3.76 7.34 -2.39 -0.02 3.74 16 39 H 0.06 2.51 7.62 -2.39 -0.02 2.49 16 40 H 0.04 1.14 8.00 -2.39 -0.02 1.12 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.06 2.41 7.24 -2.38 -0.02 2.39 16 47 H 0.03 0.96 7.75 -2.39 -0.02 0.94 16 Total: -1.00 -65.91 366.42 1.98 -63.93 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.85 Total: 26.94 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.44 Total: -1.29 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -6.14 Total: -104.37 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.04 Total: -26.59 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.88 Total: 41.39 kcal Total: -65.91 1.98 -63.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.882 kcal (2) G-P(sol) polarization free energy of solvation -65.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds