Wall clock time and date at job start Tue Mar 31 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47451 * 2 1 4 4 C 1.53005 * 109.47041 * 239.99848 * 2 1 3 5 5 C 1.52998 * 109.47328 * 120.00332 * 2 1 3 6 6 N 1.46494 * 109.47349 * 54.28871 * 5 2 1 7 7 C 1.46505 * 120.00221 * 275.80205 * 6 5 2 8 8 C 1.50700 * 109.46969 * 269.99755 * 7 6 5 9 9 H 1.08007 * 119.99911 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00215 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00144 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00161 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47396 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47194 * 120.00474 * 12 10 8 15 15 H 1.48497 * 109.47433 * 240.00302 * 12 10 8 16 16 C 1.34773 * 120.00415 * 95.79714 * 6 5 2 17 17 O 1.21283 * 120.00586 * 185.46092 * 16 6 5 18 18 C 1.50706 * 119.99365 * 5.45880 * 16 6 5 19 19 N 1.46901 * 109.47007 * 174.66592 * 18 16 6 20 20 C 1.48555 * 111.00068 * 190.00149 * 19 18 16 21 21 C 1.54386 * 104.69954 * 200.89997 * 20 19 18 22 22 C 1.54567 * 104.90764 * 23.87940 * 21 20 19 23 23 C 1.48563 * 111.00080 * 74.58028 * 19 18 16 24 24 H 1.09010 * 109.46608 * 300.00400 * 1 2 3 25 25 H 1.09002 * 109.46868 * 59.99686 * 1 2 3 26 26 H 1.08991 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46757 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46612 * 300.00166 * 3 2 1 29 29 H 1.08997 * 109.46921 * 60.00212 * 3 2 1 30 30 H 1.08998 * 109.46743 * 304.17471 * 4 2 1 31 31 H 1.09003 * 109.46763 * 64.17191 * 4 2 1 32 32 H 1.09000 * 109.47202 * 184.17145 * 4 2 1 33 33 H 1.09004 * 109.47036 * 294.28882 * 5 2 1 34 34 H 1.08997 * 109.47804 * 174.29460 * 5 2 1 35 35 H 1.08996 * 109.47007 * 29.99231 * 7 6 5 36 36 H 1.08996 * 109.47684 * 149.99945 * 7 6 5 37 37 H 0.96996 * 120.00310 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47347 * 54.66846 * 18 16 6 39 39 H 1.09004 * 109.47150 * 294.66103 * 18 16 6 40 40 H 1.08999 * 110.41374 * 319.73361 * 20 19 18 41 41 H 1.08995 * 110.41362 * 82.06253 * 20 19 18 42 42 H 1.08998 * 110.32136 * 142.80614 * 21 20 19 43 43 H 1.09001 * 110.32419 * 265.01681 * 21 20 19 44 44 H 1.09003 * 110.29853 * 241.07668 * 22 21 20 45 45 H 1.09001 * 110.40460 * 118.94291 * 22 21 20 46 46 H 1.09004 * 110.40832 * 277.81848 * 23 19 18 47 47 H 1.08995 * 110.41025 * 40.14493 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.4428 -2.0571 1.3199 7 6 0.1140 -2.2351 1.9106 8 6 0.2521 -2.4941 3.3888 9 1 1.2317 -2.5236 3.8427 10 6 -0.8721 -2.6934 4.1617 11 7 -2.0649 -2.6580 3.6090 12 14 -0.7009 -3.0152 5.9938 13 1 0.7367 -3.0054 6.3660 14 1 -1.4150 -1.9561 6.7513 15 1 -1.2882 -4.3392 6.3209 16 6 2.1156 -3.1223 0.8414 17 8 1.5830 -4.2115 0.8089 18 6 3.5298 -2.9600 0.3466 19 7 4.0815 -4.2767 0.0001 20 6 5.5412 -4.1901 -0.2620 21 6 5.8630 -5.4434 -1.1041 22 6 4.5237 -5.8273 -1.7736 23 6 3.5100 -4.7739 -1.2779 24 1 -0.3633 0.5140 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6168 -1.7251 -1.2874 31 1 1.7389 -0.1661 -2.1377 32 1 3.1274 -0.7865 -1.2127 33 1 1.7626 -0.1519 2.1363 34 1 3.1252 -0.8107 1.1996 35 1 -0.4772 -1.3330 1.7536 36 1 -0.3832 -3.0823 1.4383 37 1 -2.8558 -2.7986 4.1527 38 1 4.1384 -2.5055 1.1283 39 1 3.5348 -2.3204 -0.5360 40 1 5.7736 -3.2851 -0.8233 41 1 6.0975 -4.2087 0.6751 42 1 6.6127 -5.2094 -1.8599 43 1 6.2115 -6.2520 -0.4616 44 1 4.2167 -6.8252 -1.4602 45 1 4.6151 -5.7836 -2.8589 46 1 2.5370 -5.2341 -1.1057 47 1 3.4226 -3.9598 -1.9974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874384837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:58 Heat of formation + Delta-G solvation = -34.522369 kcal Electronic energy + Delta-G solvation = -24104.392653 eV Core-core repulsion = 20901.061536 eV Total energy + Delta-G solvation = -3203.331117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75041 -38.26484 -36.78830 -33.80068 -32.45643 -32.00191 -28.75197 -28.43680 -27.23004 -26.77264 -26.07461 -25.16641 -22.52949 -21.01021 -20.75856 -19.24294 -17.88788 -16.55989 -16.46034 -15.95695 -15.59976 -15.04112 -14.96622 -14.31360 -14.13203 -13.80009 -13.66523 -13.40550 -12.83715 -12.66901 -12.49560 -12.19526 -12.07265 -12.02615 -11.73165 -11.45689 -11.36494 -11.28295 -11.22949 -11.07184 -10.98152 -10.83137 -10.77875 -10.55368 -10.46980 -10.41877 -10.14407 -10.06208 -9.46753 -8.84405 -8.36772 -8.17051 -7.50997 -5.99131 -4.02855 3.32755 3.40416 3.43752 3.52746 3.80731 4.32044 4.50507 4.70113 4.78382 4.99012 5.01685 5.03672 5.10431 5.29545 5.33011 5.37805 5.44678 5.51441 5.58758 5.66645 5.69935 5.71696 5.77264 5.79272 5.84055 5.93655 5.96282 6.06432 6.12996 6.17164 6.20580 6.22114 6.30973 6.32003 6.42739 6.58257 6.79211 6.99252 7.02621 7.24592 7.52706 7.65705 7.98764 8.31621 8.53237 8.97844 9.23310 9.62132 11.08626 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.005919 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.365413 B = 4729.487809 C = 6094.468989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.121 3.879 6 N -0.596 5.596 7 C 0.240 3.760 8 C -0.523 4.523 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.512 3.488 17 O -0.527 6.527 18 C 0.015 3.985 19 N -0.490 5.490 20 C 0.030 3.970 21 C -0.122 4.122 22 C -0.124 4.124 23 C 0.035 3.965 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.486 4.494 -11.421 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.199 4.199 5 C -0.004 4.004 6 N -0.328 5.328 7 C 0.121 3.879 8 C -0.562 4.562 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.209 1.209 16 C 0.297 3.703 17 O -0.403 6.403 18 C -0.116 4.116 19 N -0.214 5.214 20 C -0.098 4.098 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.093 4.093 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.853 3.535 -10.920 17.232 hybrid contribution 0.214 0.572 0.497 0.788 sum 13.067 4.107 -10.422 17.212 Atomic orbital electron populations 1.22041 0.93752 1.03265 1.00902 1.21002 0.97051 0.95047 0.95699 1.21803 1.00431 0.95403 1.01817 1.22017 0.99855 1.00791 0.97200 1.21512 0.96630 0.84895 0.97359 1.48129 1.20575 1.05171 1.58932 1.19474 0.77462 0.98379 0.92626 1.21524 0.92875 1.48615 0.93235 0.92571 1.24908 0.95143 0.95310 0.98709 1.69937 0.97561 1.50207 1.35781 0.86487 0.78105 0.77854 0.85234 1.19848 1.21067 1.20939 1.20040 0.86921 0.84702 0.78599 1.90641 1.69087 1.25486 1.55055 1.22525 0.96110 0.91464 1.01517 1.65123 1.02502 1.23007 1.30807 1.23142 0.90022 0.97081 0.99580 1.22311 0.97287 0.97778 0.98647 1.22346 0.94660 0.99866 0.99349 1.23180 0.99934 0.96943 0.89229 0.92196 0.93828 0.90962 0.93000 0.92821 0.92363 0.92498 0.92931 0.93084 0.90194 0.91841 0.93742 0.94113 0.92890 0.88923 0.91461 0.94222 0.90222 0.91634 0.91056 0.90987 0.91714 0.88674 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 6.98 37.16 0.26 -2.00 16 2 C -0.09 -1.20 0.85 -154.50 -0.13 -1.33 16 3 C -0.14 -1.52 8.47 37.16 0.31 -1.20 16 4 C -0.14 -1.82 6.84 37.16 0.25 -1.56 16 5 C 0.12 1.95 4.58 -4.05 -0.02 1.94 16 6 N -0.60 -12.43 2.00 -175.06 -0.35 -12.78 16 7 C 0.24 6.17 3.93 -5.19 -0.02 6.15 16 8 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 12 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 C 0.51 10.79 6.30 -10.98 -0.07 10.72 16 17 O -0.53 -13.48 14.57 5.55 0.08 -13.40 16 18 C 0.02 0.24 3.67 -4.97 -0.02 0.22 16 19 N -0.49 -7.78 5.02 -231.41 -1.16 -8.94 16 20 C 0.03 0.36 6.45 -2.18 -0.01 0.34 16 21 C -0.12 -1.28 7.02 -25.18 -0.18 -1.45 16 22 C -0.12 -1.44 7.01 -25.19 -0.18 -1.61 16 23 C 0.03 0.51 5.90 -2.18 -0.01 0.50 16 24 H 0.06 1.00 7.72 -51.92 -0.40 0.60 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.37 5.76 -51.93 -0.30 1.07 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.86 6.75 -51.93 -0.35 0.51 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.57 6.48 -51.93 -0.34 0.24 16 33 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 34 H 0.06 0.87 6.12 -51.93 -0.32 0.56 16 35 H 0.04 1.14 5.32 -51.93 -0.28 0.86 16 36 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.09 1.36 7.30 -51.93 -0.38 0.99 16 39 H 0.07 0.93 4.28 -51.93 -0.22 0.71 16 40 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.68 7.08 -51.93 -0.37 1.31 16 47 H 0.04 0.49 7.75 -51.93 -0.40 0.09 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -32.63 354.13 -8.95 -41.58 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.34 Total: -0.11 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.23 Total: -2.87 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.77 Total: -47.68 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.63 -8.95 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874384837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.059 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds