Wall clock time and date at job start Tue Mar 31 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47496 * 2 1 4 4 C 1.52994 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47497 * 305.00168 * 4 3 2 6 6 C 1.53003 * 109.46946 * 65.00786 * 4 3 2 7 7 C 1.53003 * 109.47122 * 185.56462 * 6 4 3 8 8 C 1.50707 * 109.47065 * 185.00284 * 4 3 2 9 9 O 1.21281 * 119.99955 * 270.30576 * 8 4 3 10 10 N 1.34773 * 119.99846 * 90.30564 * 8 4 3 11 11 C 1.46498 * 119.99896 * 185.40455 * 10 8 4 12 12 C 1.53037 * 109.46269 * 204.99890 * 11 10 8 13 13 C 1.53187 * 109.31521 * 178.61421 * 12 11 10 14 14 N 1.46929 * 108.89145 * 54.56955 * 13 12 11 15 15 C 1.36932 * 120.63261 * 126.46699 * 14 13 12 16 16 H 1.07997 * 120.00089 * 322.29601 * 15 14 13 17 17 C 1.38813 * 120.00124 * 142.29613 * 15 14 13 18 18 N 1.31622 * 120.00141 * 350.25810 * 17 15 14 19 19 Si 1.86799 * 120.00015 * 170.25699 * 17 15 14 20 20 H 1.48504 * 109.46997 * 60.00254 * 19 17 15 21 21 H 1.48502 * 109.47202 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47648 * 300.00158 * 19 17 15 23 23 C 1.46964 * 118.71124 * 306.63976 * 14 13 12 24 24 C 1.53046 * 109.45919 * 84.93639 * 11 10 8 25 25 H 1.08999 * 109.47762 * 59.99522 * 1 2 3 26 26 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47215 * 299.99366 * 1 2 3 28 28 H 1.09013 * 109.47191 * 240.00338 * 2 1 3 29 29 H 1.09000 * 109.47263 * 120.00647 * 2 1 3 30 30 H 1.09013 * 109.46624 * 59.99990 * 3 2 1 31 31 H 1.08999 * 109.47005 * 300.00941 * 3 2 1 32 32 H 1.09008 * 109.46705 * 305.55814 * 6 4 3 33 33 H 1.08992 * 109.47303 * 65.56094 * 6 4 3 34 34 H 1.09001 * 109.46498 * 304.17366 * 7 6 4 35 35 H 1.09002 * 109.46879 * 64.17214 * 7 6 4 36 36 H 1.08994 * 109.46848 * 184.17838 * 7 6 4 37 37 H 0.97008 * 120.00040 * 5.40990 * 10 8 4 38 38 H 1.09000 * 109.45469 * 324.97099 * 11 10 8 39 39 H 1.09004 * 109.49340 * 58.66561 * 12 11 10 40 40 H 1.09001 * 109.50367 * 298.57263 * 12 11 10 41 41 H 1.09006 * 109.58815 * 174.42186 * 13 12 11 42 42 H 1.09000 * 109.59157 * 294.70707 * 13 12 11 43 43 H 0.97000 * 120.00030 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46555 * 293.56935 * 23 14 13 45 45 H 1.09005 * 109.70504 * 173.28924 * 23 14 13 46 46 H 1.09001 * 109.49301 * 301.33718 * 24 11 10 47 47 H 1.08996 * 109.49919 * 61.39538 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8328 -1.3065 7 6 5.6041 0.7050 -1.2489 8 6 4.0722 2.8579 0.1246 9 8 4.2695 3.5208 -0.8718 10 7 4.3022 3.3871 1.3425 11 6 4.6762 4.7979 1.4694 12 6 5.4601 5.0028 2.7677 13 6 5.8792 6.4719 2.8801 14 7 4.6844 7.3182 2.7569 15 6 4.3916 8.2551 3.7116 16 1 4.5766 8.0403 4.7537 17 6 3.8569 9.4811 3.3400 18 7 3.8089 9.8201 2.0691 19 14 3.2055 10.6496 4.6437 20 1 4.3008 11.0053 5.5814 21 1 2.6926 11.8817 3.9923 22 1 2.1059 9.9913 5.3938 23 6 3.8079 7.1368 1.5913 24 6 3.4121 5.6603 1.4934 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9563 -0.8899 32 1 3.6381 -0.1540 -1.4443 33 1 3.8011 1.4760 -2.1409 34 1 6.0426 1.6802 -1.0371 35 1 5.8803 0.0036 -0.4615 36 1 5.9746 0.3403 -2.2068 37 1 4.2202 2.8339 2.1351 38 1 5.2967 5.0867 0.6211 39 1 6.3481 4.3707 2.7601 40 1 4.8317 4.7376 3.6180 41 1 6.3509 6.6444 3.8475 42 1 6.5819 6.7135 2.0827 43 1 3.4350 10.6766 1.8095 44 1 4.3398 7.4334 0.6872 45 1 2.9128 7.7483 1.7058 46 1 2.8424 5.4962 0.5787 47 1 2.8026 5.3885 2.3552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874441478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:54 Heat of formation + Delta-G solvation = -55.524425 kcal Electronic energy + Delta-G solvation = -23157.159628 eV Core-core repulsion = 19952.917793 eV Total energy + Delta-G solvation = -3204.241835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01426 -37.60569 -36.15055 -34.35330 -33.12650 -32.10054 -30.10290 -29.76103 -28.93599 -25.36981 -24.38652 -22.94289 -22.20110 -21.81149 -20.87566 -19.83583 -19.07852 -17.16580 -16.64681 -15.76260 -15.32811 -15.17690 -14.78068 -14.36615 -13.90166 -13.82330 -13.50301 -13.43575 -13.37379 -12.98315 -12.84565 -12.50032 -12.33309 -12.20560 -11.84988 -11.53966 -11.44067 -11.28358 -11.09157 -10.97693 -10.87707 -10.82933 -10.75656 -10.56594 -10.37121 -10.23097 -10.08629 -9.78948 -9.69595 -9.30865 -8.62801 -8.43023 -6.51910 -5.78265 -3.32744 2.86366 3.37644 3.43359 3.44112 3.44971 4.48711 4.51776 4.62113 4.73922 4.90555 5.00558 5.14081 5.24614 5.31721 5.36738 5.43497 5.48003 5.48726 5.57298 5.58413 5.66292 5.67420 5.71406 5.86256 5.90815 5.93140 6.01773 6.10619 6.11237 6.17153 6.21635 6.28006 6.40973 6.46107 6.63896 6.68475 6.80222 6.96540 6.99230 7.35994 7.65110 7.80389 7.81222 8.50386 8.52783 9.23641 9.82908 10.46256 11.29922 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.003613 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.131799 B = 7747.663507 C = 8334.422834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.107 4.107 5 H 0.085 0.915 6 C -0.109 4.109 7 C -0.154 4.154 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.726 5.726 11 C 0.150 3.850 12 C -0.138 4.138 13 C 0.149 3.851 14 N -0.590 5.590 15 C -0.263 4.263 16 H 0.060 0.940 17 C 0.013 3.987 18 N -0.898 5.898 19 Si 0.903 3.097 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.179 3.821 24 C -0.146 4.146 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.393 0.607 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.255 0.745 44 H 0.022 0.978 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -20.717 -2.881 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.128 4.128 5 H 0.103 0.897 6 C -0.147 4.147 7 C -0.211 4.211 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.376 5.376 11 C 0.046 3.954 12 C -0.178 4.178 13 C 0.022 3.978 14 N -0.313 5.313 15 C -0.393 4.393 16 H 0.078 0.922 17 C -0.188 4.188 18 N -0.541 5.541 19 Si 0.733 3.267 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.052 3.948 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.835 -20.028 -3.683 20.446 hybrid contribution -0.426 0.413 1.074 1.227 sum -2.261 -19.615 -2.609 19.916 Atomic orbital electron populations 1.21777 0.95758 1.01500 1.02079 1.21577 0.95925 0.96353 1.02166 1.21535 0.92474 0.97499 1.03206 1.21414 0.97079 0.93870 1.00450 0.89666 1.21465 0.95993 1.00617 0.96615 1.21798 0.95931 1.01996 1.01404 1.20553 0.77190 0.88707 0.83445 1.90691 1.51474 1.62771 1.36720 1.46390 1.70467 1.12709 1.08039 1.21013 0.96856 0.78747 0.98769 1.22327 0.98840 1.00337 0.96328 1.20856 0.90033 0.87812 0.99120 1.43951 1.22028 1.40447 1.24910 1.19033 1.40030 0.92534 0.87683 0.92216 1.25347 1.00928 0.96550 0.95926 1.69979 1.47407 1.21962 1.14746 0.86383 0.78963 0.80323 0.81064 1.20747 1.21574 1.20888 1.20652 0.95383 0.89429 0.89293 1.22558 0.96331 0.99494 1.00221 0.92649 0.92816 0.92641 0.91590 0.91960 0.91392 0.91086 0.91263 0.90629 0.92328 0.93113 0.92655 0.77344 0.90050 0.92732 0.91993 0.92399 0.96270 0.93457 0.95993 0.90466 0.93103 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.77 16 2 C -0.12 -0.93 5.70 -26.74 -0.15 -1.09 16 3 C -0.11 -1.06 4.66 -26.74 -0.12 -1.19 16 4 C -0.11 -1.12 2.18 -91.77 -0.20 -1.32 16 5 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 6 C -0.11 -1.11 5.00 -26.73 -0.13 -1.24 16 7 C -0.15 -1.57 9.78 37.16 0.36 -1.21 16 8 C 0.52 7.55 5.92 -10.98 -0.06 7.48 16 9 O -0.54 -10.22 15.33 5.56 0.09 -10.13 16 10 N -0.73 -10.26 5.07 -53.76 -0.27 -10.54 16 11 C 0.15 2.64 2.46 -67.89 -0.17 2.48 16 12 C -0.14 -2.34 5.55 -26.62 -0.15 -2.49 16 13 C 0.15 3.13 6.51 -3.71 -0.02 3.11 16 14 N -0.59 -14.94 2.95 -172.29 -0.51 -15.44 16 15 C -0.26 -7.24 9.50 -15.06 -0.14 -7.38 16 16 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 17 C 0.01 0.35 5.04 -17.43 -0.09 0.27 16 18 N -0.90 -26.45 11.52 55.49 0.64 -25.81 16 19 Si 0.90 21.66 29.56 -169.99 -5.03 16.64 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.18 4.39 5.22 -3.69 -0.02 4.37 16 24 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.47 6.45 -51.92 -0.34 0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.56 6.32 -51.92 -0.33 0.23 16 33 H 0.08 0.91 7.65 -51.93 -0.40 0.52 16 34 H 0.06 0.74 7.01 -51.93 -0.36 0.38 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.39 4.41 8.60 -40.82 -0.35 4.06 16 38 H 0.08 1.64 7.51 -51.93 -0.39 1.25 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 2.10 6.61 -51.93 -0.34 1.76 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.32 365.22 -9.07 -40.39 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.81 Total: 1.44 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.68 Total: -2.06 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.14 Total: -51.79 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.32 -9.07 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874441478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.130 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds