Wall clock time and date at job start Tue Mar 31 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47132 * 2 1 4 4 C 1.53002 * 109.47239 * 183.57299 * 3 2 1 5 5 H 1.09005 * 109.46688 * 53.73341 * 4 3 2 6 6 C 1.52998 * 109.47444 * 293.72995 * 4 3 2 7 7 C 1.52997 * 109.46808 * 295.94958 * 6 4 3 8 8 C 1.50702 * 109.47388 * 173.72499 * 4 3 2 9 9 O 1.21280 * 119.99315 * 0.02562 * 8 4 3 10 10 N 1.34776 * 120.00266 * 180.02562 * 8 4 3 11 11 C 1.46496 * 119.99847 * 180.02562 * 10 8 4 12 12 C 1.53047 * 109.45816 * 275.06671 * 11 10 8 13 13 C 1.53191 * 109.31139 * 178.61890 * 12 11 10 14 14 N 1.46925 * 108.77986 * 54.63389 * 13 12 11 15 15 C 1.36934 * 120.63551 * 126.41155 * 14 13 12 16 16 H 1.08005 * 119.99370 * 329.37451 * 15 14 13 17 17 C 1.38808 * 120.00484 * 149.36968 * 15 14 13 18 18 N 1.31617 * 119.99915 * 344.08688 * 17 15 14 19 19 Si 1.86803 * 120.00247 * 164.08291 * 17 15 14 20 20 H 1.48500 * 109.46840 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46729 * 120.00173 * 19 17 15 22 22 H 1.48496 * 109.46987 * 240.00329 * 19 17 15 23 23 C 1.46933 * 118.73567 * 306.39597 * 14 13 12 24 24 C 1.53042 * 109.45950 * 155.00006 * 11 10 8 25 25 H 1.09002 * 109.47442 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47682 * 300.00212 * 1 2 3 27 27 H 1.09003 * 109.47225 * 59.99997 * 1 2 3 28 28 H 1.08996 * 109.47661 * 239.99365 * 2 1 3 29 29 H 1.09001 * 109.47238 * 119.99452 * 2 1 3 30 30 H 1.08998 * 109.47156 * 63.57661 * 3 2 1 31 31 H 1.08994 * 109.47214 * 303.57398 * 3 2 1 32 32 H 1.09002 * 109.47077 * 175.94630 * 6 4 3 33 33 H 1.09002 * 109.47102 * 55.94964 * 6 4 3 34 34 H 1.08994 * 109.47220 * 306.37222 * 7 6 4 35 35 H 1.09007 * 109.46751 * 186.37015 * 7 6 4 36 36 H 1.08996 * 109.47286 * 66.37571 * 7 6 4 37 37 H 0.97004 * 119.99697 * 0.02562 * 10 8 4 38 38 H 1.08997 * 109.46106 * 35.02432 * 11 10 8 39 39 H 1.09003 * 109.49738 * 298.56895 * 12 11 10 40 40 H 1.09000 * 109.49710 * 58.66302 * 12 11 10 41 41 H 1.09002 * 109.58320 * 294.84738 * 13 12 11 42 42 H 1.08994 * 109.70346 * 174.49102 * 13 12 11 43 43 H 0.96998 * 120.00069 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58441 * 293.81479 * 23 14 13 45 45 H 1.09003 * 109.70028 * 173.46444 * 23 14 13 46 46 H 1.09001 * 109.49813 * 301.33917 * 24 11 10 47 47 H 1.09004 * 109.49315 * 61.43125 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5673 1.4435 -0.0899 5 1 3.8809 0.8531 -0.9509 6 6 4.1537 0.8360 1.1860 7 6 3.7978 1.7208 2.3823 8 6 4.0606 2.8590 -0.2451 9 8 3.2684 3.7767 -0.2798 10 7 5.3819 3.1051 -0.3452 11 6 5.8613 4.4812 -0.4955 12 6 5.8232 4.8758 -1.9737 13 6 6.2923 6.3264 -2.1231 14 7 7.6140 6.4630 -1.4960 15 6 8.6679 6.9865 -2.1963 16 1 8.7255 6.8515 -3.2663 17 6 9.6620 7.6908 -1.5311 18 7 9.4527 8.1271 -0.3071 19 14 11.2970 8.0191 -2.3729 20 1 11.2796 7.4284 -3.7353 21 1 11.5173 9.4843 -2.4718 22 1 12.3933 7.4059 -1.5810 23 6 7.7833 6.0276 -0.1029 24 6 7.2975 4.5803 0.0238 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7299 1.9375 0.9203 31 1 1.6253 1.9745 -0.8562 32 1 5.2377 0.7705 1.0923 33 1 3.7411 -0.1616 1.3364 34 1 4.1110 2.7454 2.1824 35 1 4.3084 1.3517 3.2719 36 1 2.7203 1.6955 2.5451 37 1 6.0154 2.3710 -0.3178 38 1 5.2212 5.1532 0.0761 39 1 6.4823 4.2199 -2.5425 40 1 4.8041 4.7825 -2.3490 41 1 5.5836 6.9922 -1.6306 42 1 6.3612 6.5834 -3.1801 43 1 10.1475 8.6189 0.1579 44 1 7.1962 6.6690 0.5543 45 1 8.8358 6.0854 0.1748 46 1 7.3277 4.2767 1.0703 47 1 7.9427 3.9272 -0.5638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874441479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:59 Heat of formation + Delta-G solvation = -52.180738 kcal Electronic energy + Delta-G solvation = -23193.954180 eV Core-core repulsion = 19989.857338 eV Total energy + Delta-G solvation = -3204.096842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10638 -37.65081 -36.24768 -34.40002 -33.19575 -31.95791 -30.11993 -29.47429 -28.86089 -25.61358 -24.57813 -23.14715 -22.25472 -21.90978 -20.72098 -19.62788 -18.87695 -17.02257 -16.40142 -16.10550 -15.91971 -15.08431 -14.73912 -14.31678 -13.93323 -13.84031 -13.61130 -13.53714 -13.23038 -12.90052 -12.79086 -12.52406 -12.36300 -12.17388 -11.99309 -11.48342 -11.41974 -11.20177 -11.13596 -11.07837 -10.82853 -10.75464 -10.73392 -10.54744 -10.45301 -10.25348 -10.03600 -9.82363 -9.63730 -9.32641 -8.65269 -8.46032 -6.64531 -5.79828 -3.24437 2.87285 3.35788 3.42891 3.44385 3.46661 4.49139 4.53023 4.60814 4.70689 4.92775 4.95806 5.07023 5.17105 5.34802 5.39815 5.42122 5.47257 5.50591 5.54363 5.61304 5.62315 5.69477 5.76486 5.83836 5.87898 5.90621 5.99305 6.08307 6.10160 6.13688 6.29728 6.31931 6.37851 6.54265 6.58392 6.61851 6.81973 6.96533 7.01338 7.30855 7.58616 7.78370 7.82131 8.45989 8.48967 9.21100 9.83611 10.42427 11.29133 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.003253 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.197480 B = 8605.050113 C = 8874.544299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.111 4.111 5 H 0.093 0.907 6 C -0.115 4.115 7 C -0.157 4.157 8 C 0.516 3.484 9 O -0.543 6.543 10 N -0.725 5.725 11 C 0.151 3.849 12 C -0.138 4.138 13 C 0.148 3.852 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.177 3.823 24 C -0.146 4.146 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.021 0.979 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 -17.692 3.037 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.132 4.132 5 H 0.111 0.889 6 C -0.152 4.152 7 C -0.215 4.215 8 C 0.302 3.698 9 O -0.420 6.420 10 N -0.375 5.375 11 C 0.048 3.952 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.050 3.950 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.120 -16.897 3.104 21.025 hybrid contribution 1.249 -0.156 -0.369 1.312 sum -10.870 -17.054 2.734 20.408 Atomic orbital electron populations 1.21761 0.95867 1.01330 1.02007 1.21590 0.95919 0.96858 1.01878 1.21452 0.92460 0.96408 1.03664 1.21453 0.97742 0.94086 0.99931 0.88918 1.21528 1.00605 0.99525 0.93574 1.21861 1.01785 1.00240 0.97565 1.20532 0.82556 0.90982 0.75739 1.90690 1.54849 1.46401 1.50105 1.46365 1.06955 1.10105 1.74029 1.21006 0.95832 0.81402 0.97003 1.22366 0.99979 1.00045 0.95475 1.20876 0.87919 0.91922 0.97218 1.44065 1.05065 1.71645 1.10734 1.19206 0.99484 1.27470 0.92126 0.91749 1.25123 1.00129 0.97203 0.97065 1.70032 1.32766 1.39057 1.12773 0.86232 0.84043 0.77584 0.78970 1.20233 1.21681 1.21560 1.20681 1.01312 0.87371 0.85628 1.22523 0.94114 1.02764 0.99189 0.92943 0.92733 0.92684 0.92137 0.91880 0.91026 0.91157 0.91597 0.90804 0.92333 0.92571 0.92310 0.77253 0.90192 0.92432 0.92824 0.96248 0.92604 0.93650 0.96104 0.89504 0.92828 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.15 0.37 -0.76 16 2 C -0.12 -0.97 5.63 -26.73 -0.15 -1.12 16 3 C -0.10 -1.04 3.92 -26.73 -0.10 -1.15 16 4 C -0.11 -1.13 2.49 -91.77 -0.23 -1.36 16 5 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.11 -0.97 5.45 -26.73 -0.15 -1.12 16 7 C -0.16 -1.55 9.32 37.16 0.35 -1.20 16 8 C 0.52 7.38 5.56 -10.98 -0.06 7.32 16 9 O -0.54 -10.01 15.56 5.56 0.09 -9.93 16 10 N -0.72 -10.13 4.98 -53.76 -0.27 -10.40 16 11 C 0.15 2.65 2.42 -67.89 -0.16 2.49 16 12 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 13 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 14 N -0.59 -14.93 2.98 -172.32 -0.51 -15.44 16 15 C -0.25 -6.96 9.56 -15.06 -0.14 -7.10 16 16 H 0.06 1.75 7.88 -52.48 -0.41 1.33 16 17 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -26.17 11.32 55.49 0.63 -25.54 16 19 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.18 4.17 5.27 -3.71 -0.02 4.15 16 24 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 30 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 31 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 32 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.07 0.51 6.51 -51.93 -0.34 0.17 16 34 H 0.06 0.72 6.86 -51.93 -0.36 0.37 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 37 H 0.39 4.47 8.10 -40.82 -0.33 4.14 16 38 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.27 6.23 -51.93 -0.32 1.94 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -30.92 360.41 -8.99 -39.91 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.61 Total: 1.59 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.71 Total: -2.18 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.15 Total: -51.38 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.92 -8.99 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874441479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.272 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds