Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47443 * 2 1 4 4 C 1.53006 * 109.46751 * 119.99791 * 2 1 3 5 5 C 1.50708 * 109.46890 * 174.99966 * 4 2 1 6 6 O 1.21280 * 119.99932 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.44678 * 118.54558 * 0.02562 * 7 5 4 9 9 C 1.54951 * 109.52150 * 269.05242 * 8 7 5 10 10 C 1.47541 * 109.73489 * 290.52453 * 9 8 7 11 11 N 1.46264 * 114.37605 * 62.21846 * 10 9 8 12 12 C 1.46897 * 111.00283 * 148.55120 * 11 10 9 13 13 C 1.53002 * 109.46984 * 65.54164 * 12 11 10 14 14 C 1.50705 * 109.46983 * 182.70921 * 13 12 11 15 15 H 1.07995 * 120.00415 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99696 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00297 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99991 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47549 * 59.99772 * 18 16 14 20 20 H 1.48506 * 109.47557 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47134 * 299.99627 * 18 16 14 22 22 C 1.44761 * 110.64111 * 272.24893 * 11 10 9 23 23 C 1.47780 * 118.55098 * 179.97438 * 7 5 4 24 24 H 1.08996 * 109.47375 * 300.00122 * 1 2 3 25 25 H 1.09000 * 109.47317 * 60.00183 * 1 2 3 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46919 * 239.99411 * 2 1 3 28 28 H 1.08996 * 109.46935 * 59.99608 * 3 2 1 29 29 H 1.08991 * 109.47329 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46370 * 299.99765 * 3 2 1 31 31 H 1.08994 * 109.47138 * 55.00233 * 4 2 1 32 32 H 1.08995 * 109.46976 * 294.99789 * 4 2 1 33 33 H 1.09008 * 109.46375 * 149.04282 * 8 7 5 34 34 H 1.08995 * 109.45766 * 29.06346 * 8 7 5 35 35 H 1.09002 * 109.42460 * 170.44108 * 9 8 7 36 36 H 1.09003 * 109.38185 * 50.57661 * 9 8 7 37 37 H 1.08997 * 108.50502 * 300.95135 * 10 9 8 38 38 H 1.09005 * 108.38025 * 183.39256 * 10 9 8 39 39 H 1.09002 * 109.47272 * 305.54693 * 12 11 10 40 40 H 1.08997 * 109.47541 * 185.54684 * 12 11 10 41 41 H 1.09009 * 109.46734 * 62.71484 * 13 12 11 42 42 H 1.08997 * 109.47369 * 302.71705 * 13 12 11 43 43 H 0.96993 * 120.00397 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.43386 * 214.22340 * 22 11 10 45 45 H 1.08997 * 109.43466 * 334.09894 * 22 11 10 46 46 H 1.09007 * 109.06443 * 258.67005 * 23 7 5 47 47 H 1.09005 * 109.05807 * 17.59501 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2405 7 7 4.2148 -1.4322 2.1891 8 6 3.4637 -1.9647 3.3051 9 6 3.3349 -0.8821 4.4062 10 6 4.6519 -0.6439 5.0271 11 7 5.6690 -0.1332 4.1083 12 6 6.6179 0.7433 4.8078 13 6 7.4116 -0.0754 5.8279 14 6 8.3379 0.8356 6.5917 15 1 8.3581 1.8927 6.3719 16 6 9.1595 0.3193 7.5712 17 7 9.1345 -0.9680 7.8393 18 14 10.3070 1.4485 8.5184 19 1 9.5107 2.4827 9.2266 20 1 11.0775 0.6539 9.5086 21 1 11.2449 2.1067 7.5738 22 6 6.3576 -1.2242 3.4518 23 6 5.6870 -1.5210 2.0968 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1299 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6053 -1.7197 1.2952 32 1 1.7515 -0.1583 2.1370 33 1 3.9818 -2.8343 3.7097 34 1 2.4701 -2.2587 2.9669 35 1 2.6313 -1.2207 5.1669 36 1 2.9706 0.0442 3.9620 37 1 5.0091 -1.5821 5.4516 38 1 4.5252 0.0747 5.8369 39 1 6.0712 1.5335 5.3224 40 1 7.3032 1.1868 4.0855 41 1 7.9959 -0.8351 5.3085 42 1 6.7230 -0.5579 6.5215 43 1 9.7122 -1.3311 8.5287 44 1 7.3995 -0.9494 3.2883 45 1 6.3119 -2.1130 4.0811 46 1 5.9636 -2.5249 1.7745 47 1 6.0414 -0.8012 1.3588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879758414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = -47.906427 kcal Electronic energy + Delta-G solvation = -23464.857732 eV Core-core repulsion = 20260.946238 eV Total energy + Delta-G solvation = -3203.911494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29987 -38.30877 -35.76972 -35.26831 -33.01357 -32.56844 -30.32370 -28.47722 -27.18967 -26.99258 -25.87909 -24.06404 -22.31462 -21.75803 -20.29857 -19.27195 -18.65326 -17.05384 -16.46270 -16.37104 -15.79010 -15.04662 -14.89157 -14.52845 -14.29475 -14.18602 -13.83288 -13.43697 -13.15549 -13.01973 -12.75435 -12.34397 -12.25649 -12.24833 -11.94241 -11.80088 -11.49708 -11.31813 -11.14262 -11.03700 -10.94864 -10.89581 -10.74940 -10.71976 -10.52525 -10.36257 -9.93526 -9.79992 -9.46320 -9.22641 -8.42557 -8.38205 -7.58262 -6.06444 -4.09620 2.80034 3.18526 3.29500 3.33911 3.36656 4.35766 4.44320 4.63470 4.69410 4.80482 4.89331 5.04324 5.15050 5.29177 5.32056 5.38838 5.41531 5.46001 5.49475 5.53703 5.63369 5.67581 5.79272 5.81712 5.84933 5.87696 5.95064 6.03821 6.09104 6.19528 6.28237 6.30112 6.32522 6.39553 6.45341 6.68244 6.76412 6.84798 7.47397 7.51128 7.57549 7.66380 7.84843 7.94794 8.36538 8.38758 8.97222 9.55056 11.04452 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.003378 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.816377 B = 8287.009313 C = 8383.641055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.545 6.545 7 N -0.591 5.591 8 C 0.110 3.890 9 C -0.133 4.133 10 C 0.057 3.943 11 N -0.534 5.534 12 C 0.060 3.940 13 C -0.007 4.007 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.047 3.953 23 C 0.120 3.880 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -2.840 -11.440 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.323 5.323 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.071 4.071 11 N -0.257 5.257 12 C -0.067 4.067 13 C -0.045 4.045 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.083 4.083 23 C -0.002 4.002 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.511 -2.470 -12.160 20.653 hybrid contribution 1.137 -0.001 1.553 1.925 sum -15.373 -2.472 -10.606 18.840 Atomic orbital electron populations 1.21863 0.95244 1.01480 1.01874 1.20859 0.94747 0.97072 0.97260 1.21945 1.03454 0.94839 1.00745 1.21833 0.92651 1.02337 1.00787 1.20660 0.90035 0.77060 0.82208 1.90623 1.70360 1.47647 1.33702 1.47581 1.07028 1.57297 1.20357 1.21624 0.96015 0.96454 0.87307 1.21481 0.97950 0.99505 0.98235 1.20870 0.92233 0.99559 0.94477 1.61172 1.14731 1.18784 1.30970 1.22462 0.93160 0.95067 0.95970 1.19697 0.95137 0.95774 0.93877 1.21133 1.21621 0.94442 1.18835 0.92644 1.25017 0.97186 0.95024 0.97102 1.69946 1.39406 1.11739 1.32384 0.86646 0.80921 0.80669 0.79710 1.20215 1.21293 1.20170 1.22280 0.98028 0.93745 0.94215 1.22015 0.78480 1.00921 0.98809 0.92668 0.92562 0.92868 0.90691 0.93401 0.90466 0.93270 0.89418 0.88920 0.90744 0.90638 0.90687 0.91302 0.94510 0.91603 0.92063 0.91958 0.96527 0.96631 0.92931 0.89905 0.93835 0.92446 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.78 16 2 C -0.08 -0.81 2.57 -90.62 -0.23 -1.04 16 3 C -0.15 -1.72 8.93 37.16 0.33 -1.39 16 4 C -0.14 -1.35 3.64 -27.88 -0.10 -1.45 16 5 C 0.51 7.00 7.34 -10.99 -0.08 6.92 16 6 O -0.55 -9.27 13.24 5.56 0.07 -9.19 16 7 N -0.59 -7.78 2.53 -172.18 -0.44 -8.22 16 8 C 0.11 1.17 5.23 -3.99 -0.02 1.15 16 9 C -0.13 -1.54 5.95 -28.33 -0.17 -1.71 16 10 C 0.06 0.89 3.88 -6.80 -0.03 0.86 16 11 N -0.53 -9.32 4.37 -239.58 -1.05 -10.37 16 12 C 0.06 1.24 4.93 -3.82 -0.02 1.22 16 13 C -0.01 -0.17 4.46 -27.88 -0.12 -0.29 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.05 0.77 4.36 -4.41 -0.02 0.75 16 23 C 0.12 1.74 6.46 -2.78 -0.02 1.72 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.69 7.30 -51.93 -0.38 0.31 16 32 H 0.09 0.85 7.27 -51.93 -0.38 0.48 16 33 H 0.07 0.79 8.10 -51.92 -0.42 0.37 16 34 H 0.08 0.60 6.18 -51.93 -0.32 0.28 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.84 7.42 -51.93 -0.39 0.46 16 37 H 0.04 0.61 6.98 -51.93 -0.36 0.25 16 38 H 0.07 1.10 7.52 -51.93 -0.39 0.71 16 39 H 0.06 1.27 7.88 -51.93 -0.41 0.86 16 40 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.02 0.44 6.91 -51.92 -0.36 0.08 16 42 H 0.02 0.41 7.15 -51.93 -0.37 0.04 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.08 1.46 7.06 -51.93 -0.37 1.09 16 45 H 0.04 0.73 7.14 -51.93 -0.37 0.36 16 46 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.09 1.44 6.97 -51.93 -0.36 1.08 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -31.21 354.74 -9.42 -40.63 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.52 Total: -1.55 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.55 Total: -7.34 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.75 Total: -44.39 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.21 -9.42 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879758414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.278 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds