Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46876 * 2 1 4 4 C 1.53003 * 109.47316 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46681 * 305.00002 * 4 3 2 6 6 C 1.53001 * 109.47300 * 64.99590 * 4 3 2 7 7 C 1.52997 * 109.47010 * 184.99846 * 4 3 2 8 8 C 1.52999 * 109.46838 * 174.99672 * 7 4 3 9 9 N 1.46502 * 109.47138 * 179.97438 * 8 7 4 10 10 C 1.34769 * 120.00155 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00451 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00226 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00460 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47519 * 178.27937 * 13 12 10 15 15 C 1.50706 * 115.54983 * 65.13922 * 14 13 12 16 16 H 1.08003 * 119.99960 * 265.40541 * 15 14 13 17 17 C 1.37871 * 120.00367 * 85.40539 * 15 14 13 18 18 N 1.31523 * 119.99797 * 353.55719 * 17 15 14 19 19 Si 1.86798 * 120.00482 * 173.55396 * 17 15 14 20 20 H 1.48502 * 109.46926 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47393 * 120.00020 * 19 17 15 22 22 H 1.48496 * 109.47078 * 240.00555 * 19 17 15 23 23 C 1.53003 * 117.50017 * 279.47110 * 14 13 12 24 24 C 1.53000 * 117.49993 * 210.80975 * 14 13 12 25 25 H 1.09000 * 109.47373 * 60.00247 * 1 2 3 26 26 H 1.09010 * 109.46665 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47281 * 299.99742 * 1 2 3 28 28 H 1.09000 * 109.47281 * 240.00258 * 2 1 3 29 29 H 1.09000 * 109.47373 * 119.99753 * 2 1 3 30 30 H 1.09000 * 109.47238 * 59.99588 * 3 2 1 31 31 H 1.09000 * 109.46918 * 300.00032 * 3 2 1 32 32 H 1.08996 * 109.47311 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.47188 * 300.00709 * 6 4 3 34 34 H 1.09005 * 109.46674 * 60.00017 * 6 4 3 35 35 H 1.08999 * 109.47326 * 55.00265 * 7 4 3 36 36 H 1.08996 * 109.46924 * 294.99587 * 7 4 3 37 37 H 1.08996 * 109.47293 * 299.99689 * 8 7 4 38 38 H 1.09001 * 109.47117 * 60.00476 * 8 7 4 39 39 H 0.97006 * 120.00087 * 0.02562 * 9 8 7 40 40 H 0.97006 * 120.00017 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.46652 * 298.27912 * 13 12 10 42 42 H 1.08996 * 109.47005 * 58.27255 * 13 12 10 43 43 H 0.96991 * 119.99848 * 185.05619 * 18 17 15 44 44 H 1.08998 * 117.49404 * 359.97438 * 23 14 13 45 45 H 1.09001 * 117.49992 * 145.01840 * 23 14 13 46 46 H 1.09004 * 117.49571 * 214.97682 * 24 14 13 47 47 H 1.08997 * 117.49626 * 359.97427 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 1 3.9336 0.8531 0.8409 6 6 4.0795 0.8332 -1.3082 7 6 4.0799 2.8797 0.1250 8 6 5.6047 2.8706 0.2499 9 7 6.0931 4.2466 0.3696 10 6 7.4140 4.4847 0.4914 11 8 8.2005 3.5574 0.5025 12 7 7.8633 5.7505 0.6021 13 6 9.2992 6.0094 0.7340 14 6 9.5416 7.5186 0.7986 15 6 8.9759 8.2166 2.0086 16 1 8.0016 8.6799 1.9584 17 6 9.7021 8.2638 3.1796 18 7 10.8293 7.5939 3.2817 19 14 9.0852 9.2792 4.6210 20 1 7.8029 9.9319 4.2538 21 1 8.8716 8.3945 5.7944 22 1 10.0904 10.3181 4.9608 23 6 9.5494 8.2901 -0.5227 24 6 10.8600 8.0474 0.2301 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1695 0.8337 -1.3089 33 1 3.7161 -0.1906 -1.3978 34 1 3.7157 1.4227 -2.1499 35 1 3.6456 3.3432 1.0109 36 1 3.7911 3.4463 -0.7601 37 1 5.8935 2.3039 1.1351 38 1 6.0391 2.4072 -0.6360 39 1 5.4657 4.9865 0.3612 40 1 7.2359 6.4903 0.5937 41 1 9.6702 5.5424 1.6464 42 1 9.8239 5.5936 -0.1261 43 1 11.3026 7.5673 4.1279 44 1 9.3823 7.7223 -1.4379 45 1 9.1457 9.3026 -0.5167 46 1 11.3180 8.9003 0.7310 47 1 11.5548 7.3199 -0.1895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883620814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -45.387786 kcal Electronic energy + Delta-G solvation = -21951.187884 eV Core-core repulsion = 18747.385607 eV Total energy + Delta-G solvation = -3203.802277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.39767 -37.82469 -36.71238 -34.73671 -33.22197 -32.60001 -31.94703 -28.76300 -27.00419 -26.11598 -25.10410 -23.46736 -21.36404 -21.17303 -20.51485 -19.89163 -19.33746 -17.57481 -16.34749 -15.88747 -15.65674 -15.35116 -14.73373 -14.48129 -14.45459 -14.03662 -13.83857 -13.59667 -13.40171 -13.06580 -12.73803 -12.60418 -12.15079 -12.01746 -11.89600 -11.69065 -11.58078 -11.50692 -11.03598 -11.01313 -10.89215 -10.80141 -10.66643 -10.57583 -10.51243 -10.25166 -9.69671 -9.47546 -8.94418 -8.75951 -8.48421 -8.22717 -7.91956 -6.06313 -4.14749 3.25454 3.28352 3.34433 3.36313 3.86644 4.36022 4.42331 4.58167 4.63096 4.84655 4.89154 5.03526 5.06738 5.19543 5.21924 5.30674 5.38951 5.42925 5.45831 5.55738 5.59543 5.62522 5.71616 5.86930 5.89706 5.91745 5.95380 6.03487 6.06781 6.20449 6.24374 6.36889 6.49988 6.63023 6.71626 6.85742 6.89305 7.11087 7.37882 7.44938 7.50269 7.65073 7.83035 8.36048 8.72228 8.86262 9.26884 9.51822 11.01634 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.002803 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.448099 B = 9987.792739 C =10672.167395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.089 4.089 5 H 0.073 0.927 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.140 3.860 9 N -0.756 5.756 10 C 0.697 3.303 11 O -0.605 6.605 12 N -0.721 5.721 13 C 0.182 3.818 14 C 0.027 3.973 15 C -0.499 4.499 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.395 0.605 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.183 -10.480 -7.281 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.108 4.108 5 H 0.092 0.908 6 C -0.210 4.210 7 C -0.165 4.165 8 C 0.015 3.985 9 N -0.413 5.413 10 C 0.396 3.604 11 O -0.485 6.485 12 N -0.373 5.373 13 C 0.058 3.942 14 C 0.027 3.973 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.226 0.774 40 H 0.229 0.771 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.216 -11.322 -7.153 21.031 hybrid contribution -0.783 1.236 0.915 1.726 sum -16.999 -10.086 -6.238 20.728 Atomic orbital electron populations 1.21785 0.96105 1.01444 1.01736 1.21592 0.95601 0.97114 1.02149 1.21662 0.94724 0.96741 1.02065 1.21077 0.95156 0.95676 0.98859 0.90842 1.21968 1.01563 1.00594 0.96895 1.21853 0.94811 0.97235 1.02559 1.21146 0.92757 0.82772 1.01802 1.45118 1.06282 1.08615 1.81235 1.16058 0.82005 0.84111 0.78180 1.90865 1.55027 1.43376 1.59196 1.45143 1.10173 1.05107 1.76911 1.20837 0.77270 0.96406 0.99658 1.19055 0.97667 0.89419 0.91203 1.20366 1.03036 1.35396 0.94826 0.92204 1.24996 0.94479 0.95139 0.98516 1.69989 1.15664 1.40166 1.25192 0.86575 0.78819 0.80305 0.82508 1.19762 1.21063 1.20965 1.23018 1.04405 1.01213 0.96152 1.22492 0.90393 1.02648 1.03069 0.92848 0.92942 0.92816 0.91772 0.92068 0.91956 0.91980 0.92112 0.92563 0.92720 0.91300 0.91356 0.92129 0.91860 0.77429 0.77142 0.91247 0.94770 0.92905 0.91652 0.90412 0.89831 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.84 5.69 -26.73 -0.15 -0.99 16 3 C -0.11 -0.80 4.68 -26.73 -0.13 -0.93 16 4 C -0.09 -0.71 2.39 -90.62 -0.22 -0.92 16 5 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 6 C -0.15 -1.22 8.70 37.16 0.32 -0.90 16 7 C -0.13 -1.13 4.80 -26.73 -0.13 -1.26 16 8 C 0.14 1.76 5.43 -4.04 -0.02 1.74 16 9 N -0.76 -11.05 5.56 -65.23 -0.36 -11.41 16 10 C 0.70 13.80 8.57 -86.92 -0.74 13.05 16 11 O -0.60 -14.43 16.34 5.29 0.09 -14.35 16 12 N -0.72 -14.47 5.48 -65.23 -0.36 -14.82 16 13 C 0.18 4.26 5.50 -4.04 -0.02 4.23 16 14 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 15 C -0.50 -12.90 8.63 -34.44 -0.30 -13.19 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 18 N -0.87 -24.51 12.91 55.43 0.72 -23.80 16 19 Si 0.89 20.67 29.55 -169.99 -5.02 15.65 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 24 C -0.15 -3.41 9.42 -26.69 -0.25 -3.66 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.85 6.56 -51.93 -0.34 0.50 16 39 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 40 H 0.40 7.15 8.38 -40.82 -0.34 6.81 16 41 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 43 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 47 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -30.39 379.23 -9.85 -40.24 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -8.78 Total: 8.55 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.84 Total: -5.78 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.00 Total: -50.03 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.39 -9.85 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883620814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds