Wall clock time and date at job start Tue Mar 31 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47036 * 2 1 4 4 C 1.53004 * 109.46740 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47431 * 55.00260 * 4 3 2 6 6 C 1.53004 * 109.47125 * 294.99754 * 4 3 2 7 7 C 1.53006 * 109.46683 * 175.00083 * 4 3 2 8 8 C 1.52996 * 109.46865 * 184.99769 * 7 4 3 9 9 N 1.46497 * 109.47267 * 180.02562 * 8 7 4 10 10 C 1.34776 * 120.00194 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00274 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00034 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 H 1.09001 * 109.47643 * 59.99769 * 1 2 3 26 26 H 1.09007 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47110 * 299.99804 * 1 2 3 28 28 H 1.09004 * 109.47110 * 240.00196 * 2 1 3 29 29 H 1.08995 * 109.47235 * 120.00208 * 2 1 3 30 30 H 1.08994 * 109.46901 * 60.00052 * 3 2 1 31 31 H 1.08998 * 109.46924 * 299.99816 * 3 2 1 32 32 H 1.09003 * 109.46954 * 180.02562 * 6 4 3 33 33 H 1.08996 * 109.47029 * 300.00125 * 6 4 3 34 34 H 1.08996 * 109.47091 * 60.00449 * 6 4 3 35 35 H 1.08997 * 109.46837 * 65.00027 * 7 4 3 36 36 H 1.09000 * 109.46911 * 304.99533 * 7 4 3 37 37 H 1.09007 * 109.47402 * 59.99722 * 8 7 4 38 38 H 1.09003 * 109.47711 * 300.00112 * 8 7 4 39 39 H 0.97004 * 119.99607 * 0.02562 * 9 8 7 40 40 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 42 42 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 43 43 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 44 44 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 45 45 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 46 46 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 47 47 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 4.0799 2.8796 -0.1264 8 6 5.6046 2.8704 -0.2523 9 7 6.0930 4.2464 -0.3721 10 6 7.4138 4.4843 -0.4959 11 8 8.2001 3.5571 -0.5078 12 7 7.8632 5.7503 -0.6056 13 6 9.2987 6.0089 -0.7407 14 6 9.5486 7.5182 -0.7264 15 6 8.9734 8.2834 -1.8902 16 1 8.0065 8.7564 -1.8007 17 6 9.6839 8.3846 -3.0675 18 7 10.9004 7.8913 -3.1458 19 14 8.9183 9.2222 -4.5514 20 1 8.5879 10.6291 -4.2099 21 1 9.8796 9.1998 -5.6831 22 1 7.6789 8.5031 -4.9411 23 6 9.5753 8.2170 0.6345 24 6 10.8761 8.0091 -0.1452 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1705 0.8330 1.3062 33 1 3.7175 1.4220 2.1484 34 1 3.7172 -0.1911 1.3960 35 1 3.7919 3.4460 0.7592 36 1 3.6449 3.3432 -1.0117 37 1 5.8927 2.3038 -1.1379 38 1 6.0397 2.4066 0.6330 39 1 5.4657 4.9862 -0.3623 40 1 7.2359 6.4901 -0.5957 41 1 9.6564 5.5903 -1.6815 42 1 9.8313 5.5446 0.0893 43 1 11.4275 8.0256 -3.9490 44 1 9.1768 9.2301 0.6880 45 1 9.4153 7.6013 1.5196 46 1 11.5712 7.2567 0.2274 47 1 11.3336 8.8851 -0.6048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883620815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:26 Heat of formation + Delta-G solvation = -45.460276 kcal Electronic energy + Delta-G solvation = -21951.848929 eV Core-core repulsion = 18748.043509 eV Total energy + Delta-G solvation = -3203.805421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.41783 -37.83295 -36.70473 -34.74911 -33.24090 -32.61174 -31.93220 -28.77446 -27.01066 -26.14541 -25.09593 -23.47549 -21.36854 -21.13813 -20.52360 -19.90376 -19.34062 -17.58090 -16.36081 -15.89657 -15.66000 -15.36579 -14.74010 -14.49233 -14.46162 -14.03207 -13.83863 -13.61366 -13.40835 -13.07854 -12.73737 -12.59584 -12.16071 -12.02506 -11.91182 -11.70379 -11.58706 -11.51065 -11.04485 -10.95827 -10.93640 -10.80973 -10.67305 -10.58394 -10.53477 -10.21202 -9.68969 -9.43095 -9.01647 -8.78181 -8.46146 -8.20988 -7.94142 -6.05370 -4.15124 3.26718 3.27574 3.33667 3.34636 3.84317 4.35971 4.41650 4.57556 4.62322 4.84060 4.88254 5.02845 5.06094 5.18751 5.22466 5.29955 5.40764 5.42390 5.45271 5.54998 5.58844 5.61948 5.71057 5.86337 5.89029 5.91027 5.94424 6.02892 6.07183 6.19666 6.23627 6.37829 6.51178 6.62638 6.73427 6.84198 6.88922 7.14751 7.36754 7.44802 7.49162 7.65858 7.82734 8.36359 8.70485 8.85899 9.24690 9.51655 11.01848 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.002819 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.961153 B = 9928.788220 C =10647.463310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.089 4.089 5 H 0.073 0.927 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.140 3.860 9 N -0.756 5.756 10 C 0.697 3.303 11 O -0.605 6.605 12 N -0.721 5.721 13 C 0.182 3.818 14 C 0.024 3.976 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.396 0.604 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.262 0.738 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.229 -10.972 6.972 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.108 4.108 5 H 0.092 0.908 6 C -0.210 4.210 7 C -0.165 4.165 8 C 0.015 3.985 9 N -0.412 5.412 10 C 0.396 3.604 11 O -0.485 6.485 12 N -0.374 5.374 13 C 0.058 3.942 14 C 0.023 3.977 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.226 0.774 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.309 -11.909 6.796 21.307 hybrid contribution -0.861 1.216 -0.909 1.745 sum -17.170 -10.693 5.887 21.067 Atomic orbital electron populations 1.21784 0.96102 1.01447 1.01738 1.21590 0.95605 0.97109 1.02149 1.21661 0.94718 0.96747 1.02070 1.21079 0.95159 0.95661 0.98861 0.90847 1.21968 1.01556 1.00600 0.96901 1.21855 0.94794 0.97250 1.02569 1.21148 0.92778 0.82753 1.01806 1.45120 1.06300 1.08634 1.81182 1.16066 0.82019 0.84109 0.78174 1.90863 1.55033 1.43379 1.59232 1.45155 1.10192 1.05126 1.76916 1.20842 0.77344 0.96229 0.99763 1.19049 0.97949 0.89765 0.90890 1.20298 1.04253 1.33644 0.95502 0.92331 1.24990 0.94907 0.94867 0.98364 1.69979 1.08877 1.43769 1.28431 0.86686 0.79190 0.79805 0.82442 1.20327 1.21288 1.20197 1.23011 1.04872 1.01084 0.95847 1.22465 0.90294 1.02510 1.02745 0.92824 0.92939 0.92839 0.92073 0.91769 0.91965 0.91963 0.92118 0.92710 0.92558 0.91339 0.91303 0.92133 0.91844 0.77405 0.77039 0.91779 0.94441 0.92823 0.90464 0.91739 0.91798 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.15 0.37 -0.56 16 2 C -0.13 -0.83 5.69 -26.73 -0.15 -0.99 16 3 C -0.11 -0.80 4.68 -26.73 -0.13 -0.92 16 4 C -0.09 -0.70 2.39 -90.61 -0.22 -0.92 16 5 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 6 C -0.15 -1.21 8.70 37.16 0.32 -0.89 16 7 C -0.13 -1.13 4.80 -26.73 -0.13 -1.25 16 8 C 0.14 1.75 5.43 -4.05 -0.02 1.73 16 9 N -0.76 -11.00 5.56 -65.22 -0.36 -11.36 16 10 C 0.70 13.72 8.57 -86.91 -0.74 12.97 16 11 O -0.61 -14.34 16.34 5.29 0.09 -14.25 16 12 N -0.72 -14.42 5.48 -65.23 -0.36 -14.78 16 13 C 0.18 4.24 5.50 -4.05 -0.02 4.22 16 14 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 15 C -0.50 -12.91 8.59 -34.44 -0.30 -13.20 16 16 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 17 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 18 N -0.87 -24.45 12.65 55.43 0.70 -23.75 16 19 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 24 C -0.14 -3.30 9.14 -26.69 -0.24 -3.54 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 38 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 39 H 0.39 4.62 8.49 -40.82 -0.35 4.27 16 40 H 0.40 7.17 8.34 -40.82 -0.34 6.83 16 41 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 43 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -30.26 378.75 -9.88 -40.14 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.78 Total: 8.53 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.85 Total: -5.88 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.02 Total: -49.90 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.26 -9.88 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883620815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.324 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds