Wall clock time and date at job start Tue Mar 31 2020 05:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47376 * 2 1 4 4 C 1.53004 * 109.47263 * 120.00087 * 2 1 3 5 5 C 1.53005 * 109.47085 * 175.56848 * 4 2 1 6 6 H 1.09003 * 109.62159 * 62.24733 * 5 4 2 7 7 C 1.53238 * 109.63096 * 301.65705 * 5 4 2 8 8 N 1.46900 * 109.33856 * 186.45825 * 7 5 4 9 9 C 1.46903 * 110.99571 * 187.25688 * 8 7 5 10 10 C 1.46890 * 111.26680 * 63.11072 * 8 7 5 11 11 C 1.53703 * 109.25714 * 296.75090 * 10 8 7 12 12 N 1.47076 * 108.27205 * 54.08475 * 11 10 8 13 13 C 1.34778 * 120.88011 * 128.75533 * 12 11 10 14 14 O 1.21284 * 120.00263 * 174.62839 * 13 12 11 15 15 C 1.50704 * 120.00070 * 354.63346 * 13 12 11 16 16 C 1.52997 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47088 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.37886 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00056 * 179.72568 * 19 17 16 22 22 H 1.48494 * 109.47209 * 180.27682 * 21 19 17 23 23 H 1.48503 * 109.47182 * 300.28137 * 21 19 17 24 24 H 1.48504 * 109.47200 * 60.27804 * 21 19 17 25 25 H 1.09002 * 109.47210 * 299.99581 * 1 2 3 26 26 H 1.08996 * 109.47662 * 59.99439 * 1 2 3 27 27 H 1.08999 * 109.47458 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47216 * 239.99955 * 2 1 3 29 29 H 1.09003 * 109.46701 * 55.39888 * 3 2 1 30 30 H 1.08997 * 109.47595 * 175.39715 * 3 2 1 31 31 H 1.08995 * 109.47277 * 295.40053 * 3 2 1 32 32 H 1.09001 * 109.47142 * 55.57360 * 4 2 1 33 33 H 1.08994 * 109.47223 * 295.57362 * 4 2 1 34 34 H 1.08991 * 109.49545 * 306.42326 * 7 5 4 35 35 H 1.09006 * 109.49041 * 66.47500 * 7 5 4 36 36 H 1.08998 * 109.47072 * 60.00262 * 9 8 7 37 37 H 1.09005 * 109.46696 * 180.02562 * 9 8 7 38 38 H 1.08996 * 109.47313 * 299.99846 * 9 8 7 39 39 H 1.09004 * 109.49904 * 56.85147 * 10 8 7 40 40 H 1.09003 * 109.49053 * 176.90786 * 10 8 7 41 41 H 1.08999 * 109.79538 * 294.42582 * 11 10 8 42 42 H 1.09000 * 109.70163 * 173.68720 * 11 10 8 43 43 H 1.08998 * 109.46883 * 59.99530 * 15 13 12 44 44 H 1.09005 * 109.46783 * 299.99675 * 15 13 12 45 45 H 1.08998 * 109.47047 * 59.99653 * 16 15 13 46 46 H 1.08996 * 109.47126 * 299.99861 * 16 15 13 47 47 H 0.97000 * 120.00727 * 359.72888 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5659 -0.8185 1.1947 6 1 3.9967 0.1828 1.1943 7 6 3.9892 -1.5661 -0.0742 8 7 5.4404 -1.7917 -0.0447 9 6 5.9121 -2.3514 -1.3184 10 6 5.8230 -2.6525 1.0824 11 6 5.4763 -1.9442 2.4017 12 7 4.0554 -1.5664 2.3627 13 6 3.2251 -1.8921 3.3732 14 8 2.0809 -1.4898 3.3716 15 6 3.7183 -2.7563 4.5050 16 6 2.5867 -2.9732 5.5116 17 6 3.0798 -3.8378 6.6431 18 1 4.0986 -4.1964 6.6444 19 6 2.2307 -4.1702 7.6773 20 7 0.9903 -3.7332 7.6760 21 14 2.8396 -5.2483 9.0760 22 1 1.7400 -5.4628 10.0506 23 1 3.2837 -6.5578 8.5345 24 1 3.9796 -4.5813 9.7550 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6109 1.9795 0.8459 30 1 3.1268 1.4436 0.0825 31 1 1.7455 1.9320 -0.9283 32 1 1.6133 -1.7235 1.2898 33 1 1.7429 -0.1638 2.1374 34 1 3.4728 -2.5248 -0.1209 35 1 3.7309 -0.9709 -0.9502 36 1 5.6826 -1.6577 -2.1273 37 1 6.9896 -2.5091 -1.2691 38 1 5.4141 -3.3031 -1.5037 39 1 5.2811 -3.5963 1.0197 40 1 6.8951 -2.8455 1.0451 41 1 6.0899 -1.0503 2.5130 42 1 5.6528 -2.6196 3.2388 43 1 4.5552 -2.2637 5.0001 44 1 4.0446 -3.7190 4.1115 45 1 1.7497 -3.4655 5.0167 46 1 2.2609 -2.0103 5.9050 47 1 0.6739 -3.1737 6.9495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886597981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:13 Heat of formation + Delta-G solvation = -41.080262 kcal Electronic energy + Delta-G solvation = -23639.204987 eV Core-core repulsion = 20435.589499 eV Total energy + Delta-G solvation = -3203.615489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44636 -37.92859 -36.48568 -34.41333 -33.82123 -31.78807 -30.52810 -28.68132 -27.16094 -26.67672 -25.22851 -24.26158 -22.92476 -21.79610 -20.84219 -19.75783 -18.51318 -16.98914 -16.16142 -15.98734 -15.79550 -15.26647 -14.95531 -14.75423 -14.49864 -13.94417 -13.72710 -13.65568 -13.45127 -13.17389 -12.65271 -12.45447 -12.28735 -12.14872 -12.06412 -12.05134 -11.69640 -11.49458 -11.45442 -11.37140 -11.12878 -10.82467 -10.73703 -10.50459 -10.47521 -10.12171 -10.08887 -9.86094 -8.74219 -8.63347 -8.44929 -8.30240 -8.24849 -6.30726 -4.00765 3.13583 3.17017 3.45538 3.47925 3.66799 3.70855 4.56816 4.64657 4.75306 4.84707 4.91489 4.97704 5.01941 5.10370 5.20419 5.27458 5.32680 5.33265 5.46888 5.47784 5.53106 5.59078 5.61402 5.63981 5.70152 5.76779 5.83824 5.89299 5.96544 6.08112 6.08567 6.10481 6.14491 6.27722 6.49110 6.56715 6.72282 6.75055 6.80389 6.94163 7.53100 7.58796 7.74050 8.21227 8.50878 8.70075 8.93505 9.72762 11.10169 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.004334 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.145070 B = 6459.444128 C = 7713.936750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.148 4.148 4 C -0.108 4.108 5 C 0.152 3.848 6 H 0.075 0.925 7 C 0.044 3.956 8 N -0.544 5.544 9 C 0.026 3.974 10 C 0.039 3.961 11 C 0.113 3.887 12 N -0.624 5.624 13 C 0.513 3.487 14 O -0.528 6.528 15 C -0.123 4.123 16 C 0.026 3.974 17 C -0.608 4.608 18 H 0.048 0.952 19 C 0.016 3.984 20 N -0.911 5.911 21 Si 1.069 2.931 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.288 1.288 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.013 0.987 46 H 0.014 0.986 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 5.871 -19.273 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.205 4.205 4 C -0.146 4.146 5 C 0.049 3.951 6 H 0.093 0.907 7 C -0.084 4.084 8 N -0.268 5.268 9 C -0.122 4.122 10 C -0.090 4.090 11 C -0.010 4.010 12 N -0.360 5.360 13 C 0.303 3.697 14 O -0.404 6.404 15 C -0.163 4.163 16 C -0.011 4.011 17 C -0.647 4.647 18 H 0.066 0.934 19 C -0.189 4.189 20 N -0.547 5.547 21 Si 0.898 3.102 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.325 5.812 -17.764 20.461 hybrid contribution 0.346 -0.155 -1.762 1.803 sum 8.671 5.657 -19.526 22.101 Atomic orbital electron populations 1.21773 0.95188 1.01694 1.01399 1.21330 0.96034 0.96332 0.98695 1.21891 1.01065 0.96194 1.01385 1.22227 0.92046 1.02233 0.98082 1.21329 0.95486 0.94613 0.83674 0.90701 1.22650 0.87125 0.99736 0.98931 1.61941 1.13927 1.47716 1.03243 1.22356 1.00594 0.97983 0.91313 1.22612 1.01064 0.94369 0.90936 1.21885 0.81748 1.00138 0.97264 1.48403 1.09670 1.57589 1.20333 1.21499 0.85369 0.80068 0.82716 1.90651 1.19029 1.53475 1.77241 1.21763 1.02381 0.97739 0.94412 1.19001 0.92486 0.97004 0.92659 1.22029 0.99685 1.34886 1.08058 0.93361 1.25832 0.94381 0.98232 1.00433 1.70731 1.16085 1.33032 1.34802 0.83549 0.75359 0.75666 0.75667 1.20772 1.21513 1.21471 0.92472 0.93211 0.92843 0.91894 0.92602 0.92572 0.93212 0.91507 0.88006 0.94426 0.89679 0.91353 0.91273 0.95714 0.94181 0.89627 0.90859 0.88667 0.90263 0.90377 0.96835 0.96745 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.15 0.34 -1.30 16 2 C -0.10 -1.20 2.67 -90.62 -0.24 -1.45 16 3 C -0.15 -1.53 9.04 37.16 0.34 -1.19 16 4 C -0.11 -1.59 2.68 -26.73 -0.07 -1.66 16 5 C 0.15 2.06 2.88 -67.49 -0.19 1.87 16 6 H 0.08 1.00 6.57 -51.93 -0.34 0.66 16 7 C 0.04 0.51 4.31 -3.70 -0.02 0.49 16 8 N -0.54 -5.80 4.88 -242.31 -1.18 -6.98 16 9 C 0.03 0.21 9.58 60.07 0.58 0.79 16 10 C 0.04 0.41 5.64 -3.46 -0.02 0.39 16 11 C 0.11 1.37 6.54 -3.36 -0.02 1.35 16 12 N -0.62 -9.53 3.00 -164.64 -0.49 -10.02 16 13 C 0.51 9.96 7.52 -10.98 -0.08 9.88 16 14 O -0.53 -11.81 11.67 5.55 0.06 -11.75 16 15 C -0.12 -2.55 4.00 -27.88 -0.11 -2.66 16 16 C 0.03 0.70 3.57 -27.89 -0.10 0.60 16 17 C -0.61 -17.54 9.11 -34.44 -0.31 -17.85 16 18 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 19 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -28.87 13.65 55.43 0.76 -28.11 16 21 Si 1.07 25.52 29.90 -169.99 -5.08 20.43 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.57 6.39 -51.93 -0.33 0.23 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 33 H 0.10 1.80 6.18 -51.93 -0.32 1.48 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.86 6.66 -51.93 -0.35 0.51 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.13 6.01 -51.93 -0.31 0.81 16 43 H 0.08 1.52 7.79 -51.93 -0.40 1.12 16 44 H 0.08 1.51 7.88 -51.93 -0.41 1.11 16 45 H 0.01 0.39 7.97 -51.93 -0.41 -0.02 16 46 H 0.01 0.42 7.96 -51.93 -0.41 0.00 16 47 H 0.27 8.75 7.22 -40.82 -0.29 8.46 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -32.98 356.23 -9.15 -42.13 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.56 Total: -0.70 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.02 Total: -10.37 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.92 Total: -45.12 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.06 Total: -11.75 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.98 -9.15 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886597981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.050 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds