Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47213 * 120.00019 * 2 1 3 5 5 C 1.53002 * 109.47191 * 172.99636 * 4 2 1 6 6 H 1.09008 * 109.78052 * 44.43333 * 5 4 2 7 7 C 1.53697 * 109.70149 * 165.16839 * 5 4 2 8 8 N 1.46899 * 109.25833 * 173.69098 * 7 5 4 9 9 C 1.46896 * 110.99917 * 172.61011 * 8 7 5 10 10 C 1.46904 * 111.26379 * 296.76160 * 8 7 5 11 11 C 1.53235 * 109.34106 * 63.10566 * 10 8 7 12 12 N 1.47073 * 109.63142 * 283.94562 * 5 4 2 13 13 C 1.34779 * 120.87770 * 9.10784 * 12 5 4 14 14 O 1.21273 * 120.00328 * 353.73098 * 13 12 5 15 15 C 1.50707 * 119.99658 * 173.73682 * 13 12 5 16 16 C 1.53000 * 109.46982 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47174 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99967 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00361 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99653 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00311 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47140 * 269.99869 * 21 19 17 23 23 H 1.48500 * 109.46951 * 29.99811 * 21 19 17 24 24 H 1.48496 * 109.47256 * 149.99663 * 21 19 17 25 25 H 1.08998 * 109.47265 * 299.99984 * 1 2 3 26 26 H 1.09001 * 109.47248 * 60.00147 * 1 2 3 27 27 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47265 * 240.00016 * 2 1 3 29 29 H 1.08995 * 109.47230 * 300.00323 * 3 2 1 30 30 H 1.09007 * 109.47051 * 60.00106 * 3 2 1 31 31 H 1.09002 * 109.47132 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46845 * 53.00219 * 4 2 1 33 33 H 1.08999 * 109.46902 * 292.99861 * 4 2 1 34 34 H 1.09001 * 109.64277 * 53.68935 * 7 5 4 35 35 H 1.09001 * 109.44564 * 293.57295 * 7 5 4 36 36 H 1.08997 * 109.46778 * 188.24953 * 9 8 7 37 37 H 1.08989 * 109.47454 * 308.25498 * 9 8 7 38 38 H 1.09005 * 109.46763 * 68.25847 * 9 8 7 39 39 H 1.08994 * 109.49291 * 303.13729 * 10 8 7 40 40 H 1.09010 * 109.51008 * 183.07548 * 10 8 7 41 41 H 1.09002 * 109.62721 * 186.45745 * 11 10 8 42 42 H 1.08997 * 109.63274 * 65.88093 * 11 10 8 43 43 H 1.08993 * 109.47427 * 59.99544 * 15 13 12 44 44 H 1.09001 * 109.46737 * 299.99118 * 15 13 12 45 45 H 1.08993 * 109.47284 * 59.99613 * 16 15 13 46 46 H 1.09007 * 109.47079 * 299.99550 * 16 15 13 47 47 H 0.97003 * 119.99972 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5599 -0.8754 1.1644 6 1 4.0071 0.0595 0.8264 7 6 4.1204 -1.2512 2.5453 8 7 5.5547 -1.5442 2.4226 9 6 6.1674 -1.7372 3.7436 10 6 5.7885 -2.7090 1.5584 11 6 5.2952 -2.3970 0.1416 12 7 3.8954 -1.9530 0.2215 13 6 2.9461 -2.5149 -0.5530 14 8 1.7814 -2.2145 -0.3987 15 6 3.3322 -3.5166 -1.6107 16 6 2.0764 -3.9969 -2.3409 17 6 2.4623 -4.9990 -3.3981 18 1 3.4997 -5.2663 -3.5358 19 6 1.4913 -5.5739 -4.1904 20 7 0.2283 -5.2481 -4.0230 21 14 1.9699 -6.8156 -5.5014 22 1 2.2410 -6.1076 -6.7782 23 1 3.1899 -7.5446 -5.0709 24 1 0.8592 -7.7816 -5.6972 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.5780 -1.7063 1.3140 33 1 1.7825 -0.1402 2.1348 34 1 3.6006 -2.1310 2.9247 35 1 3.9769 -0.4187 3.2341 36 1 7.2498 -1.8067 3.6353 37 1 5.9200 -0.8921 4.3858 38 1 5.7872 -2.6562 4.1897 39 1 5.2455 -3.5684 1.9517 40 1 6.8548 -2.9339 1.5311 41 1 5.3603 -3.2938 -0.4746 42 1 5.9061 -1.6058 -0.2929 43 1 3.8274 -4.3671 -1.1423 44 1 4.0108 -3.0486 -2.3238 45 1 1.5809 -3.1466 -2.8093 46 1 1.3980 -4.4651 -1.6275 47 1 -0.4549 -5.6529 -4.5802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886597982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = -17.249492 kcal Electronic energy + Delta-G solvation = -23961.879321 eV Core-core repulsion = 20759.297212 eV Total energy + Delta-G solvation = -3202.582109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53748 -37.90586 -35.89574 -34.35885 -33.41038 -31.76976 -30.67811 -28.68199 -26.81673 -26.53671 -25.58965 -24.20793 -22.71909 -21.77537 -20.44558 -19.65341 -18.37583 -16.96954 -15.95732 -15.85267 -15.44883 -15.13443 -14.98218 -14.85454 -14.40372 -14.20421 -13.67951 -13.30438 -13.16620 -12.99966 -12.45997 -12.27641 -12.20321 -12.15433 -11.89463 -11.82603 -11.62465 -11.37757 -11.29749 -11.26211 -10.95027 -10.92950 -10.58246 -10.30086 -10.17317 -10.04235 -9.63302 -9.53484 -9.08572 -8.64843 -8.36388 -8.31477 -8.09687 -5.95332 -3.99276 3.23318 3.28277 3.33561 3.39977 3.42350 3.75434 4.47628 4.74152 4.79332 4.91278 5.07525 5.17381 5.25350 5.30496 5.35415 5.39854 5.41464 5.46867 5.51956 5.59651 5.62219 5.62845 5.69728 5.85628 5.93343 5.97533 6.03360 6.19406 6.22517 6.24052 6.25412 6.33179 6.51137 6.65140 6.75613 6.80255 6.84414 6.93065 6.98364 7.09965 7.75495 7.85889 7.88496 8.08261 8.40850 8.83515 9.09247 9.64211 11.15484 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.004829 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.669047 B = 5796.963634 C = 7117.244055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.154 4.154 4 C -0.107 4.107 5 C 0.151 3.849 6 H 0.075 0.925 7 C 0.045 3.955 8 N -0.544 5.544 9 C 0.026 3.974 10 C 0.040 3.960 11 C 0.114 3.886 12 N -0.622 5.622 13 C 0.502 3.498 14 O -0.508 6.508 15 C -0.130 4.130 16 C 0.040 3.960 17 C -0.526 4.526 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.287 1.287 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.039 0.961 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.023 0.977 46 H 0.022 0.978 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 9.746 14.033 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.144 4.144 5 C 0.047 3.953 6 H 0.093 0.907 7 C -0.084 4.084 8 N -0.268 5.268 9 C -0.122 4.122 10 C -0.089 4.089 11 C -0.009 4.009 12 N -0.359 5.359 13 C 0.293 3.707 14 O -0.384 6.384 15 C -0.170 4.170 16 C 0.002 3.998 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.213 1.213 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.066 10.259 13.825 19.943 hybrid contribution 0.048 -1.365 -0.262 1.391 sum 10.114 8.894 13.563 19.115 Atomic orbital electron populations 1.21655 0.95585 1.02075 0.99683 1.21339 0.95938 0.93134 0.99762 1.22050 1.00448 0.97855 1.00784 1.22038 0.92469 1.02899 0.97043 1.21498 0.96337 0.90150 0.87280 0.90684 1.22680 0.87279 1.00601 0.97860 1.61935 1.13570 1.38481 1.12840 1.22354 0.99863 1.00184 0.89839 1.22526 1.01223 0.91363 0.93776 1.21748 0.82216 1.01018 0.95944 1.48280 1.08328 1.38230 1.41029 1.21398 0.85297 0.81988 0.81968 1.90701 1.18938 1.60181 1.68537 1.21909 1.03492 0.96122 0.95491 1.18872 0.90325 0.96185 0.94381 1.21225 0.93281 1.24268 1.17684 0.92754 1.25005 0.94971 0.96871 0.97429 1.69993 0.99880 1.43323 1.39608 0.86622 0.78058 0.81285 0.82173 1.20685 1.19927 1.21256 0.94388 0.93752 0.91796 0.88842 0.93347 0.93622 0.93281 0.88482 0.93730 0.94352 0.90142 0.91292 0.91460 0.95702 0.94244 0.89713 0.88732 0.91075 0.90725 0.90560 0.95854 0.95944 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.03 37.15 0.34 -1.76 16 2 C -0.08 -1.31 1.86 -90.62 -0.17 -1.47 16 3 C -0.15 -2.01 9.01 37.16 0.33 -1.68 16 4 C -0.11 -1.56 3.67 -26.73 -0.10 -1.65 16 5 C 0.15 2.02 3.03 -67.25 -0.20 1.81 16 6 H 0.08 1.00 6.15 -51.92 -0.32 0.68 16 7 C 0.04 0.51 4.89 -3.46 -0.02 0.50 16 8 N -0.54 -5.81 4.88 -242.31 -1.18 -6.99 16 9 C 0.03 0.22 9.62 60.06 0.58 0.79 16 10 C 0.04 0.42 5.62 -3.70 -0.02 0.40 16 11 C 0.11 1.36 6.48 -3.61 -0.02 1.34 16 12 N -0.62 -9.16 3.00 -164.66 -0.49 -9.66 16 13 C 0.50 9.30 6.82 -10.98 -0.07 9.23 16 14 O -0.51 -10.59 8.48 5.56 0.05 -10.54 16 15 C -0.13 -2.61 4.11 -27.88 -0.11 -2.72 16 16 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 17 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.15 7.56 -51.93 -0.39 0.76 16 28 H 0.09 1.77 5.28 -52.21 -0.28 1.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.61 6.38 -51.93 -0.33 0.28 16 32 H 0.10 1.70 5.96 -51.96 -0.31 1.39 16 33 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.51 8.00 -51.94 -0.42 0.09 16 38 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.72 8.11 -51.92 -0.42 0.30 16 41 H 0.09 1.09 6.04 -51.93 -0.31 0.78 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.39 7.42 -51.93 -0.39 1.00 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -31.22 354.09 -9.19 -40.41 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.61 Total: -0.87 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 0.00 Total: -7.80 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.94 Total: -43.13 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.05 Total: -10.54 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.22 -9.19 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886597982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.164 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds