Wall clock time and date at job start Tue Mar 31 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 C 1.53007 * 109.47161 * 240.00037 * 2 1 3 5 5 N 1.46900 * 109.47493 * 120.00033 * 2 1 3 6 6 C 1.47477 * 111.00105 * 150.36029 * 5 2 1 7 7 C 1.53505 * 87.93441 * 221.30003 * 6 5 2 8 8 C 1.47484 * 110.99649 * 54.39235 * 5 2 1 9 9 H 1.09002 * 113.47003 * 253.52966 * 8 5 2 10 10 C 1.50698 * 113.47880 * 23.93699 * 8 5 2 11 11 O 1.21283 * 120.00035 * 308.22449 * 10 8 5 12 12 N 1.34770 * 120.00171 * 127.94805 * 10 8 5 13 13 C 1.46494 * 120.00395 * 180.27182 * 12 10 8 14 14 C 1.53005 * 109.47286 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47026 * 300.00229 * 14 13 12 16 16 C 1.52994 * 109.47091 * 60.00327 * 14 13 12 17 17 C 1.50705 * 109.46950 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99937 * 359.97438 * 17 14 13 19 19 C 1.37874 * 119.99853 * 180.02562 * 17 14 13 20 20 N 1.31517 * 120.00065 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00019 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.46891 * 60.00013 * 21 19 17 23 23 H 1.48500 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46954 * 300.00084 * 21 19 17 25 25 H 1.08997 * 109.47245 * 333.05583 * 1 2 3 26 26 H 1.09000 * 109.47460 * 93.06000 * 1 2 3 27 27 H 1.09002 * 109.46848 * 213.05549 * 1 2 3 28 28 H 1.08996 * 109.47412 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46840 * 300.00064 * 3 2 1 30 30 H 1.08997 * 109.46563 * 59.99709 * 3 2 1 31 31 H 1.08992 * 109.47242 * 270.87446 * 4 2 1 32 32 H 1.09007 * 109.46893 * 30.87680 * 4 2 1 33 33 H 1.08997 * 109.47141 * 150.86690 * 4 2 1 34 34 H 1.09001 * 113.47799 * 336.06499 * 6 5 2 35 35 H 1.09005 * 113.47541 * 106.47038 * 6 5 2 36 36 H 1.09008 * 114.16817 * 272.38005 * 7 6 5 37 37 H 1.09002 * 114.17522 * 139.67013 * 7 6 5 38 38 H 0.97005 * 119.99543 * 0.27520 * 12 10 8 39 39 H 1.08997 * 109.47407 * 300.00252 * 13 12 10 40 40 H 1.09004 * 109.46725 * 60.00421 * 13 12 10 41 41 H 1.08995 * 109.47351 * 60.00078 * 15 14 13 42 42 H 1.09001 * 109.46578 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47489 * 299.99933 * 15 14 13 44 44 H 1.09005 * 109.47031 * 59.99797 * 16 14 13 45 45 H 1.09001 * 109.47286 * 179.97438 * 16 14 13 46 46 H 1.08996 * 109.47076 * 300.00300 * 16 14 13 47 47 H 0.97005 * 119.99907 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 3.3241 -1.3318 0.9450 7 6 2.8233 -2.5435 1.7433 8 6 1.4401 -2.0447 1.3026 9 1 0.6785 -2.1326 2.0775 10 6 0.9923 -2.6086 -0.0212 11 8 0.2585 -1.9622 -0.7387 12 7 1.4116 -3.8289 -0.4104 13 6 0.9811 -4.3746 -1.6999 14 6 1.5937 -5.7628 -1.8964 15 6 3.1197 -5.6549 -1.8721 16 6 1.1300 -6.6889 -0.7704 17 6 1.1513 -6.3239 -3.2233 18 1 0.4982 -5.7481 -3.8623 19 6 1.5796 -7.5727 -3.6209 20 7 2.3737 -8.2744 -2.8421 21 14 1.0306 -8.2685 -5.2653 22 1 1.4812 -7.3698 -6.3583 23 1 1.6244 -9.6163 -5.4555 24 1 -0.4505 -8.3727 -5.2891 25 1 -0.3633 0.9161 0.4656 26 1 -0.3634 -0.0549 -1.0262 27 1 -0.3633 -0.8614 0.5606 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.1463 -1.7850 -1.0368 32 1 1.3294 -0.5828 -2.0643 33 1 3.0074 -0.3097 -1.5370 34 1 3.5030 -1.5495 -0.1080 35 1 4.1602 -0.8153 1.4165 36 1 3.0013 -2.4753 2.8166 37 1 3.1069 -3.5063 1.3182 38 1 1.9984 -4.3458 0.1635 39 1 -0.1060 -4.4519 -1.7171 40 1 1.3112 -3.7146 -2.5021 41 1 3.4400 -5.2489 -0.9126 42 1 3.5561 -6.6438 -2.0125 43 1 3.4502 -4.9950 -2.6743 44 1 0.0428 -6.7658 -0.7877 45 1 1.5660 -7.6780 -0.9106 46 1 1.4502 -6.2829 0.1891 47 1 2.6747 -9.1531 -3.1218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897956003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:56 Heat of formation + Delta-G solvation = 59.891684 kcal Electronic energy + Delta-G solvation = -24686.334846 eV Core-core repulsion = 21487.097829 eV Total energy + Delta-G solvation = -3199.237017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.31275 -38.11337 -36.52938 -35.09845 -33.12730 -30.88769 -28.18559 -27.47209 -27.19927 -26.33399 -25.78179 -25.44000 -24.37793 -21.61229 -20.10600 -19.02854 -18.52773 -16.96504 -16.22517 -16.01848 -15.57638 -15.34101 -14.83836 -14.66197 -14.19208 -14.04880 -13.28776 -13.09240 -12.94073 -12.70579 -12.39690 -12.24011 -12.06344 -11.64124 -11.50887 -11.27666 -11.23467 -11.04078 -11.00833 -10.88895 -10.76295 -10.67818 -10.51784 -10.39592 -10.22941 -10.12430 -9.67650 -9.41468 -9.27676 -8.86263 -8.47801 -8.40535 -8.33664 -6.05960 -4.16328 2.85741 3.27188 3.31842 3.34792 3.57897 3.87934 4.31240 4.36643 4.80667 4.91523 5.02230 5.11225 5.20843 5.23403 5.38920 5.49604 5.59495 5.71911 5.73627 5.75296 5.88506 5.94239 5.98060 6.08337 6.15934 6.25359 6.29950 6.33381 6.39613 6.44991 6.55187 6.72318 6.76414 6.82640 6.88121 6.95852 7.00496 7.08541 7.30003 7.50281 7.64939 7.95295 7.95903 8.09570 8.33676 8.61156 8.83943 9.49751 10.95306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.004501 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.714753 B = 6219.463674 C = 6562.580372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.069 3.931 3 C -0.126 4.126 4 C -0.167 4.167 5 N -0.442 5.442 6 C -0.022 4.022 7 C -0.142 4.142 8 C 0.005 3.995 9 H 0.119 0.881 10 C 0.498 3.502 11 O -0.533 6.533 12 N -0.712 5.712 13 C 0.132 3.868 14 C 0.057 3.943 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.056 0.944 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.005 0.995 42 H 0.086 0.914 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.086 0.914 46 H 0.006 0.994 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 11.415 8.669 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.021 4.021 3 C -0.184 4.184 4 C -0.225 4.225 5 N -0.165 5.165 6 C -0.151 4.151 7 C -0.180 4.180 8 C -0.108 4.108 9 H 0.137 0.863 10 C 0.284 3.716 11 O -0.413 6.413 12 N -0.365 5.365 13 C 0.009 3.991 14 C 0.056 3.944 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.546 4.546 18 H 0.074 0.926 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.025 0.975 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.448 12.198 8.662 15.031 hybrid contribution 0.077 -1.157 -1.400 1.818 sum 1.525 11.041 7.263 13.304 Atomic orbital electron populations 1.22093 0.92034 0.98991 1.02613 1.21536 0.97162 0.94440 0.88924 1.21742 1.00307 0.94765 1.01559 1.23170 0.99579 1.01106 0.98674 1.69332 1.03043 1.10288 1.33790 1.24157 0.94754 0.94976 1.01211 1.23235 0.94446 0.98501 1.01830 1.23234 0.99307 0.91978 0.96286 0.86334 1.20189 0.81527 0.81932 0.87912 1.90942 1.37916 1.56999 1.55424 1.46621 1.50022 1.17404 1.22406 1.21731 0.98813 0.96593 0.81922 1.18347 0.92386 0.88226 0.95451 1.21829 0.98321 1.02777 0.95855 1.21829 0.98971 1.03466 0.94569 1.20926 1.29792 1.01651 1.02194 0.92568 1.24868 0.94782 0.96721 0.97042 1.69789 1.33949 1.12171 1.36477 0.86639 0.78981 0.78094 0.84184 1.20298 1.21296 1.20282 0.96397 0.91778 0.91154 0.93254 0.92474 0.92294 0.90676 0.91086 0.94906 0.89389 0.89655 0.88116 0.90108 0.76633 0.92669 0.92767 0.97613 0.89563 0.95503 0.95448 0.89571 0.97543 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 7.52 37.15 0.28 -1.21 16 2 C 0.07 0.95 0.75 -131.60 -0.10 0.86 16 3 C -0.13 -1.52 8.41 37.16 0.31 -1.20 16 4 C -0.17 -2.53 5.81 37.16 0.22 -2.32 16 5 N -0.44 -5.76 6.17 -222.24 -1.37 -7.13 16 6 C -0.02 -0.26 7.27 -7.55 -0.05 -0.32 16 7 C -0.14 -1.52 7.91 -26.20 -0.21 -1.73 16 8 C 0.00 0.06 3.51 -72.59 -0.26 -0.20 16 9 H 0.12 1.43 8.11 -51.93 -0.42 1.01 16 10 C 0.50 7.85 4.11 -10.99 -0.05 7.80 16 11 O -0.53 -9.58 8.60 5.55 0.05 -9.53 16 12 N -0.71 -11.71 4.62 -65.03 -0.30 -12.01 16 13 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 14 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 15 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 16 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 17 C -0.51 -12.95 8.01 -34.44 -0.28 -13.23 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.12 9.35 55.43 0.52 -22.60 16 21 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H 0.02 0.24 7.78 -51.93 -0.40 -0.16 16 26 H 0.06 1.04 6.54 -51.93 -0.34 0.70 16 27 H 0.07 1.12 4.99 -51.93 -0.26 0.86 16 28 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.08 1.21 2.89 -61.43 -0.18 1.03 16 32 H 0.07 1.18 6.90 -51.93 -0.36 0.82 16 33 H 0.03 0.46 7.50 -51.93 -0.39 0.07 16 34 H 0.09 1.15 4.84 -51.93 -0.25 0.90 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.08 0.86 6.26 -51.93 -0.32 0.53 16 38 H 0.40 6.03 4.20 -40.82 -0.17 5.85 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 42 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -26.09 334.37 -8.59 -34.68 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.78 Total: 7.32 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.28 Total: -11.17 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -1.15 Total: -41.74 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.05 Total: -9.53 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.09 -8.59 -34.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897956003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.570 kcal (2) G-P(sol) polarization free energy of solvation -26.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds