Wall clock time and date at job start Tue Mar 31 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46827 * 2 1 4 4 C 1.53002 * 109.47086 * 239.99809 * 2 1 3 5 5 N 1.46899 * 109.47265 * 120.00157 * 2 1 3 6 6 C 1.47962 * 111.00256 * 58.80550 * 5 2 1 7 7 C 1.53939 * 86.18132 * 222.41870 * 6 5 2 8 8 C 1.47961 * 110.99977 * 319.44458 * 5 2 1 9 9 H 1.09001 * 113.76015 * 23.26611 * 8 5 2 10 10 C 1.50704 * 113.86205 * 251.91632 * 8 5 2 11 11 O 1.21281 * 119.99418 * 3.88146 * 10 8 5 12 12 N 1.34772 * 120.00024 * 183.88591 * 10 8 5 13 13 C 1.46503 * 119.99906 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46751 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47577 * 299.99784 * 14 13 12 16 16 C 1.53003 * 109.47356 * 60.00316 * 14 13 12 17 17 C 1.50708 * 109.46654 * 179.97438 * 14 13 12 18 18 H 1.07997 * 120.00074 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99910 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99939 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00166 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47097 * 89.99789 * 21 19 17 23 23 H 1.48495 * 109.47128 * 210.00177 * 21 19 17 24 24 H 1.48508 * 109.46898 * 330.00161 * 21 19 17 25 25 H 1.09006 * 109.47284 * 309.37625 * 1 2 3 26 26 H 1.08995 * 109.47709 * 69.37992 * 1 2 3 27 27 H 1.09002 * 109.47022 * 189.37921 * 1 2 3 28 28 H 1.09007 * 109.46915 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47194 * 299.99791 * 3 2 1 30 30 H 1.08997 * 109.47566 * 60.00464 * 3 2 1 31 31 H 1.09001 * 109.47265 * 300.00195 * 4 2 1 32 32 H 1.09011 * 109.46838 * 59.99790 * 4 2 1 33 33 H 1.08998 * 109.47184 * 179.97438 * 4 2 1 34 34 H 1.08996 * 113.75690 * 108.09870 * 6 5 2 35 35 H 1.09006 * 113.75759 * 336.73627 * 6 5 2 36 36 H 1.08997 * 113.73199 * 138.07925 * 7 6 5 37 37 H 1.08999 * 113.73046 * 269.25913 * 7 6 5 38 38 H 0.97005 * 119.99992 * 359.97438 * 12 10 8 39 39 H 1.08995 * 109.47158 * 299.99835 * 13 12 10 40 40 H 1.09001 * 109.47122 * 60.00257 * 13 12 10 41 41 H 1.08997 * 109.46980 * 59.99843 * 15 14 13 42 42 H 1.08999 * 109.47326 * 180.02562 * 15 14 13 43 43 H 1.09001 * 109.46931 * 300.00796 * 15 14 13 44 44 H 1.09005 * 109.47139 * 59.99538 * 16 14 13 45 45 H 1.08999 * 109.47209 * 179.97438 * 16 14 13 46 46 H 1.08997 * 109.46514 * 299.99736 * 16 14 13 47 47 H 0.97005 * 119.99834 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.5219 -2.0851 1.2481 7 6 1.2722 -1.8344 2.7463 8 6 1.2070 -0.3396 2.3844 9 1 0.2037 0.0098 2.1406 10 6 1.9182 0.5546 3.3671 11 8 3.0276 0.9734 3.1129 12 7 1.3213 0.8888 4.5283 13 6 2.0130 1.7577 5.4839 14 6 1.1226 1.9798 6.7081 15 6 -0.1870 2.6406 6.2734 16 6 0.8197 0.6337 7.3695 17 6 1.8344 2.8730 7.6914 18 1 2.8226 3.2454 7.4654 19 6 1.2234 3.2157 8.8789 20 7 0.0198 2.7627 9.1539 21 14 2.1053 4.3235 10.0973 22 1 1.7753 5.7417 9.8056 23 1 1.6700 3.9876 11.4767 24 1 3.5718 4.1219 9.9781 25 1 -0.3634 0.6520 0.7944 26 1 -0.3634 0.3619 -0.9617 27 1 -0.3633 -1.0140 0.1675 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2495 34 1 2.2897 -2.8329 1.0499 35 1 0.6107 -2.2461 0.6719 36 1 0.3271 -2.2401 3.1073 37 1 2.1178 -2.0971 3.3819 38 1 0.4338 0.5541 4.7314 39 1 2.9461 1.2871 5.7933 40 1 2.2283 2.7168 5.0129 41 1 -0.7015 1.9942 5.5624 42 1 -0.8211 2.7992 7.1456 43 1 0.0289 3.5995 5.8022 44 1 1.7528 0.1629 7.6793 45 1 0.1858 0.7920 8.2419 46 1 0.3052 -0.0127 6.6585 47 1 -0.4099 3.0035 9.9896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897956004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:59 Heat of formation + Delta-G solvation = -4.864963 kcal Electronic energy + Delta-G solvation = -23676.188363 eV Core-core repulsion = 20474.143288 eV Total energy + Delta-G solvation = -3202.045076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08530 -38.49774 -36.20975 -34.94067 -33.16599 -30.85991 -28.32664 -27.59176 -27.36687 -26.54653 -25.71414 -25.40224 -24.37352 -21.27289 -20.01095 -18.90585 -18.52993 -17.25053 -16.42465 -15.80477 -15.33314 -15.01827 -14.69103 -14.34916 -14.18831 -13.86773 -13.63651 -13.05597 -12.88854 -12.76568 -12.55267 -12.36062 -12.14982 -12.08443 -11.72329 -11.57881 -11.39061 -11.28886 -11.17148 -11.15088 -10.85095 -10.71560 -10.66469 -10.57929 -10.36099 -10.18863 -9.61502 -9.46627 -9.19995 -8.78394 -8.60105 -8.41572 -8.24054 -6.01037 -4.10854 3.10178 3.29128 3.36030 3.39629 3.47658 4.11760 4.39162 4.42520 4.61855 4.64836 4.82096 4.89006 5.06392 5.16381 5.25768 5.27934 5.37085 5.47924 5.49926 5.58059 5.68088 5.74996 5.80526 5.89088 5.90306 5.99072 6.07012 6.26779 6.31226 6.36645 6.44694 6.53653 6.82082 6.83880 6.95758 7.02178 7.03945 7.11008 7.38080 7.57019 7.70728 8.02376 8.11501 8.22370 8.40665 8.83806 8.91114 9.54905 11.00312 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034100 B = 0.003649 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.929189 B = 7671.719223 C = 7863.008145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 C -0.129 4.129 4 C -0.136 4.136 5 N -0.437 5.437 6 C -0.004 4.004 7 C -0.130 4.130 8 C -0.002 4.002 9 H 0.108 0.892 10 C 0.517 3.483 11 O -0.531 6.531 12 N -0.719 5.719 13 C 0.135 3.865 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.395 0.605 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.006 0.994 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.006 0.994 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -9.032 -16.313 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.024 4.024 3 C -0.187 4.187 4 C -0.193 4.193 5 N -0.160 5.160 6 C -0.132 4.132 7 C -0.168 4.168 8 C -0.115 4.115 9 H 0.125 0.875 10 C 0.301 3.699 11 O -0.407 6.407 12 N -0.370 5.370 13 C 0.012 3.988 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.230 0.770 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.025 0.975 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.537 -8.552 -16.366 18.530 hybrid contribution -0.937 0.439 0.703 1.251 sum -2.473 -8.114 -15.663 17.812 Atomic orbital electron populations 1.22610 0.96877 1.02183 1.02739 1.21550 0.92676 0.96118 0.92017 1.21691 1.02306 0.93539 1.01122 1.21812 1.02053 0.99683 0.95791 1.68688 1.44995 1.01824 1.00524 1.23950 1.00064 0.93233 0.96001 1.23274 1.03311 0.93055 0.97185 1.23706 0.97778 0.96430 0.93542 0.87475 1.19992 0.86519 0.81059 0.82311 1.90665 1.19449 1.53894 1.76649 1.46261 1.20853 1.51065 1.18848 1.21668 0.95848 0.91940 0.89344 1.18354 0.92172 0.93870 0.90095 1.21819 0.99426 0.97420 1.00081 1.21816 0.99917 0.95776 1.01221 1.21000 1.02245 1.29254 1.01876 0.92470 1.24875 0.94887 0.95934 0.97815 1.69805 1.13564 1.44833 1.24303 0.86579 0.80088 0.80873 0.80385 1.20736 1.21281 1.19891 0.91778 0.91716 0.91945 0.91558 0.92839 0.92640 0.92757 0.92259 0.91740 0.89169 0.90636 0.90283 0.88662 0.76990 0.92865 0.92931 0.97548 0.89640 0.95525 0.95480 0.89662 0.97497 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 7.27 37.16 0.27 -1.45 16 2 C 0.07 0.74 0.72 -131.60 -0.09 0.64 16 3 C -0.13 -1.64 8.63 37.16 0.32 -1.31 16 4 C -0.14 -1.26 8.38 37.16 0.31 -0.95 16 5 N -0.44 -5.65 5.45 -216.43 -1.18 -6.83 16 6 C 0.00 -0.04 6.51 -2.76 -0.02 -0.06 16 7 C -0.13 -1.42 7.84 -25.79 -0.20 -1.63 16 8 C 0.00 -0.03 3.06 -67.80 -0.21 -0.23 16 9 H 0.11 1.24 5.06 -51.93 -0.26 0.98 16 10 C 0.52 9.15 7.22 -10.99 -0.08 9.07 16 11 O -0.53 -11.50 16.69 5.56 0.09 -11.40 16 12 N -0.72 -12.86 4.96 -60.29 -0.30 -13.16 16 13 C 0.13 2.90 4.50 -4.04 -0.02 2.88 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 21 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.06 0.64 6.28 -51.93 -0.33 0.31 16 26 H 0.06 0.53 8.12 -51.93 -0.42 0.10 16 27 H 0.06 0.51 5.75 -51.93 -0.30 0.21 16 28 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.81 7.68 -51.93 -0.40 0.42 16 31 H 0.05 0.45 7.09 -51.93 -0.37 0.08 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.61 5.54 -51.93 -0.29 0.32 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 38 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 46 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -29.06 354.38 -8.26 -37.32 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.15 Total: 5.02 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 0.44 Total: -8.99 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.96 Total: -43.07 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.06 -8.26 -37.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897956004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds