Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46638 * 2 1 4 4 C 1.53001 * 109.46582 * 119.99542 * 2 1 3 5 5 N 1.46502 * 109.46787 * 175.00296 * 4 2 1 6 6 C 1.34778 * 120.00086 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99983 * 180.02562 * 6 5 4 9 9 C 1.53117 * 109.52129 * 179.97438 * 8 6 5 10 10 C 1.53042 * 109.27738 * 182.37046 * 9 8 6 11 11 N 1.46851 * 109.51830 * 59.18214 * 10 9 8 12 12 C 1.46898 * 110.99682 * 174.15734 * 11 10 9 13 13 C 1.53006 * 109.47006 * 170.00115 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48508 * 109.47394 * 329.99535 * 18 16 14 22 22 C 1.46839 * 111.19765 * 298.25422 * 11 10 9 23 23 C 1.53038 * 109.52321 * 61.74421 * 22 11 10 24 24 H 1.08993 * 109.47290 * 299.99982 * 1 2 3 25 25 H 1.09004 * 109.46948 * 60.00753 * 1 2 3 26 26 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47072 * 239.99517 * 2 1 3 28 28 H 1.09001 * 109.47165 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47554 * 299.99326 * 3 2 1 30 30 H 1.08995 * 109.47784 * 59.99953 * 3 2 1 31 31 H 1.09003 * 109.47152 * 55.00688 * 4 2 1 32 32 H 1.08998 * 109.47735 * 295.00328 * 4 2 1 33 33 H 0.97000 * 120.00071 * 0.02562 * 5 4 2 34 34 H 1.09006 * 109.52202 * 300.11877 * 8 6 5 35 35 H 1.09006 * 109.50431 * 62.43510 * 9 8 6 36 36 H 1.08996 * 109.50401 * 302.31383 * 9 8 6 37 37 H 1.08992 * 109.46857 * 299.16430 * 10 9 8 38 38 H 1.09007 * 109.45121 * 179.18665 * 10 9 8 39 39 H 1.09001 * 109.47392 * 50.00413 * 12 11 10 40 40 H 1.09001 * 109.47520 * 290.00136 * 12 11 10 41 41 H 1.09001 * 109.47002 * 299.99782 * 13 12 11 42 42 H 1.08993 * 109.46955 * 60.00219 * 13 12 11 43 43 H 0.96996 * 120.00505 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.46389 * 181.75688 * 22 11 10 45 45 H 1.08998 * 109.46466 * 301.72418 * 22 11 10 46 46 H 1.09001 * 109.50415 * 180.87699 * 23 22 11 47 47 H 1.09005 * 109.50244 * 60.76180 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1729 -1.4290 2.1909 7 8 3.5698 -1.8840 3.1397 8 6 5.6749 -1.5366 2.1309 9 6 6.1865 -2.2583 3.3807 10 6 7.7155 -2.3122 3.3427 11 7 8.2534 -0.9467 3.2894 12 6 9.7188 -0.9539 3.3914 13 6 10.2582 0.4446 3.0844 14 6 11.7616 0.4371 3.1884 15 1 12.2804 -0.4739 3.4480 16 6 12.4747 1.5935 2.9533 17 7 11.8429 2.7029 2.6377 18 14 14.3381 1.5844 3.0829 19 1 14.9247 1.2488 1.7606 20 1 14.8113 2.9262 3.5082 21 1 14.7599 0.5709 4.0831 22 6 7.8138 -0.2500 2.0738 23 6 6.2878 -0.1347 2.0739 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1371 33 1 3.9824 -0.4621 0.4321 34 1 5.9647 -2.0970 1.2420 35 1 5.7872 -3.2723 3.4045 36 1 5.8633 -1.7183 4.2706 37 1 8.0377 -2.8641 2.4598 38 1 8.0834 -2.8127 4.2384 39 1 10.1293 -1.6667 2.6762 40 1 10.0114 -1.2427 4.4009 41 1 9.9657 0.7333 2.0748 42 1 9.8478 1.1574 3.7995 43 1 12.3445 3.5165 2.4726 44 1 8.2534 0.7471 2.0477 45 1 8.1356 -0.8116 1.1968 46 1 5.9609 0.3687 1.1640 47 1 5.9662 0.4388 2.9434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898315085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = -66.579436 kcal Electronic energy + Delta-G solvation = -22511.257486 eV Core-core repulsion = 19306.536270 eV Total energy + Delta-G solvation = -3204.721216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23788 -38.28020 -36.86468 -34.22632 -33.43501 -32.47325 -30.66432 -29.21895 -27.56488 -26.90005 -25.08543 -23.37376 -22.91116 -20.92837 -20.76572 -19.81308 -19.31797 -17.23928 -16.51635 -16.31743 -15.78174 -15.02339 -14.81770 -14.63526 -14.43966 -14.22946 -13.98447 -13.63313 -13.47236 -13.12982 -12.92169 -12.74485 -12.53938 -12.33622 -12.21551 -11.74984 -11.51375 -11.31950 -11.21000 -11.11847 -11.09970 -10.98809 -10.87369 -10.60992 -10.50069 -10.30363 -9.88151 -9.65772 -9.28861 -9.19756 -9.07721 -8.35202 -7.67635 -6.01665 -4.03711 2.62898 3.07924 3.31066 3.37549 3.41102 4.35508 4.38471 4.48704 4.53426 4.62058 4.68558 4.87493 4.96272 5.14318 5.23280 5.29326 5.32642 5.34532 5.44721 5.45588 5.51086 5.58237 5.62504 5.70984 5.74205 5.82225 5.86578 5.88492 5.93318 5.99094 6.18699 6.28224 6.29058 6.36404 6.38259 6.55548 6.59273 6.93284 7.37400 7.51667 7.61894 7.79555 7.85240 8.04125 8.17361 8.42114 9.02908 9.60085 11.09745 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026281 B = 0.002931 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.172879 B = 9551.176059 C =10448.435254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.151 4.151 4 C 0.123 3.877 5 N -0.733 5.733 6 C 0.521 3.479 7 O -0.541 6.541 8 C -0.108 4.108 9 C -0.093 4.093 10 C 0.055 3.945 11 N -0.540 5.540 12 C 0.062 3.938 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.052 3.948 23 C -0.105 4.105 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.019 0.981 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.025 0.975 43 H 0.260 0.740 44 H 0.098 0.902 45 H 0.028 0.972 46 H 0.064 0.936 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.240 -6.148 -7.171 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.208 4.208 4 C -0.001 4.001 5 N -0.386 5.386 6 C 0.308 3.692 7 O -0.418 6.418 8 C -0.129 4.129 9 C -0.131 4.131 10 C -0.074 4.074 11 N -0.265 5.265 12 C -0.064 4.064 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.076 4.076 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.046 0.954 46 H 0.083 0.917 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.841 -6.042 -6.107 22.542 hybrid contribution 1.593 -0.192 -1.105 1.948 sum -19.248 -6.234 -7.211 21.479 Atomic orbital electron populations 1.21764 0.94093 1.02121 1.02299 1.21362 0.96696 0.96874 0.97829 1.21882 1.01332 0.95363 1.02215 1.21409 0.80129 1.00491 0.98075 1.46080 1.07592 1.60668 1.24272 1.20823 0.90125 0.76642 0.81660 1.90679 1.70486 1.47505 1.33104 1.21442 0.90394 0.99646 1.01413 1.21389 0.94663 1.00103 0.96938 1.22081 0.94195 0.90632 1.00471 1.62042 1.11958 1.15001 1.37489 1.22316 0.83450 1.00844 0.99822 1.19248 0.95172 0.90097 0.97135 1.21192 0.91916 0.95657 1.47228 0.92747 1.24988 0.98477 0.95567 0.95289 1.69956 1.35473 1.00246 1.47669 0.86591 0.85757 0.77328 0.78300 1.20730 1.21198 1.19870 1.22170 0.93280 1.01281 0.90826 1.21616 0.96344 0.94017 1.02306 0.92279 0.92149 0.92412 0.90586 0.92371 0.92352 0.92294 0.91708 0.91504 0.76493 0.89076 0.91499 0.90380 0.95532 0.90801 0.96242 0.91876 0.96181 0.95658 0.92990 0.88382 0.95403 0.91699 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.19 37.16 0.34 -0.46 16 2 C -0.11 -0.69 2.96 -90.62 -0.27 -0.96 16 3 C -0.15 -0.97 9.07 37.15 0.34 -0.63 16 4 C 0.12 1.08 5.06 -4.04 -0.02 1.06 16 5 N -0.73 -7.05 5.19 -60.29 -0.31 -7.37 16 6 C 0.52 6.69 7.16 -10.99 -0.08 6.61 16 7 O -0.54 -8.93 15.98 5.56 0.09 -8.84 16 8 C -0.11 -1.33 2.59 -91.65 -0.24 -1.57 16 9 C -0.09 -1.29 4.68 -26.65 -0.12 -1.41 16 10 C 0.05 0.83 5.42 -3.83 -0.02 0.81 16 11 N -0.54 -9.80 4.81 -234.67 -1.13 -10.93 16 12 C 0.06 1.32 5.21 -3.82 -0.02 1.30 16 13 C 0.02 0.53 4.22 -27.88 -0.12 0.41 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 C 0.05 0.87 4.85 -3.84 -0.02 0.85 16 23 C -0.10 -1.37 5.26 -26.65 -0.14 -1.51 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.40 3.00 7.14 -40.82 -0.29 2.71 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 39 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.10 1.87 5.81 -51.93 -0.30 1.57 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.68 7.67 -51.93 -0.40 0.29 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -31.75 366.79 -9.72 -41.46 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.83 Total: -1.63 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.78 Total: -8.93 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.70 Total: -44.11 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.75 -9.72 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898315085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.118 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds