Wall clock time and date at job start Tue Mar 31 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47568 * 2 1 4 4 C 1.53000 * 109.46964 * 119.99882 * 2 1 3 5 5 N 1.46506 * 109.47271 * 174.16024 * 4 2 1 6 6 C 1.46500 * 120.00230 * 276.69891 * 5 4 2 7 7 C 1.50697 * 109.46912 * 269.99829 * 6 5 4 8 8 H 1.08003 * 120.00176 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99799 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00216 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00007 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47038 * 90.00212 * 11 9 7 13 13 H 1.48502 * 109.47129 * 210.00023 * 11 9 7 14 14 H 1.48500 * 109.46781 * 330.00258 * 11 9 7 15 15 C 1.34772 * 120.00035 * 96.69588 * 5 4 2 16 16 O 1.21278 * 120.00315 * 185.36420 * 15 5 4 17 17 C 1.50711 * 120.00063 * 5.36001 * 15 5 4 18 18 N 1.46899 * 109.47173 * 174.23981 * 17 15 5 19 19 C 1.46908 * 110.99939 * 293.95467 * 18 17 15 20 20 C 1.46898 * 110.99971 * 170.00014 * 18 17 15 21 21 C 1.53777 * 113.61349 * 279.13756 * 20 18 17 22 22 C 1.53964 * 87.01959 * 220.04701 * 21 20 18 23 23 C 1.53774 * 113.61634 * 181.52745 * 20 18 17 24 24 H 1.08998 * 109.47247 * 300.00167 * 1 2 3 25 25 H 1.09000 * 109.46981 * 59.99998 * 1 2 3 26 26 H 1.09000 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47450 * 239.99660 * 2 1 3 28 28 H 1.08998 * 109.47322 * 64.69196 * 3 2 1 29 29 H 1.08999 * 109.47632 * 184.69718 * 3 2 1 30 30 H 1.09009 * 109.46702 * 304.69777 * 3 2 1 31 31 H 1.08998 * 109.47398 * 54.16237 * 4 2 1 32 32 H 1.08997 * 109.47325 * 294.15919 * 4 2 1 33 33 H 1.09009 * 109.46949 * 29.99890 * 6 5 4 34 34 H 1.08997 * 109.47458 * 149.99709 * 6 5 4 35 35 H 0.97000 * 119.99884 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.46923 * 54.23787 * 17 15 5 37 37 H 1.09005 * 109.46913 * 294.23863 * 17 15 5 38 38 H 1.08998 * 109.46818 * 59.99816 * 19 18 17 39 39 H 1.08995 * 109.46971 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.46683 * 299.99928 * 19 18 17 41 41 H 1.09008 * 112.84820 * 50.33010 * 20 18 17 42 42 H 1.08994 * 113.61625 * 334.56333 * 21 20 18 43 43 H 1.09003 * 113.61527 * 105.47515 * 21 20 18 44 44 H 1.08997 * 113.53536 * 270.81297 * 22 21 20 45 45 H 1.08995 * 113.66893 * 139.93261 * 22 21 20 46 46 H 1.09002 * 113.61591 * 254.53135 * 23 20 18 47 47 H 1.09006 * 113.61332 * 25.34897 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4982 -0.8442 1.1811 6 6 4.1063 -1.9430 0.4267 7 6 4.3011 -3.1290 1.3358 8 1 4.0015 -3.0703 2.3718 9 6 4.8608 -4.2894 0.8447 10 7 5.2252 -4.3611 -0.4169 11 14 5.1017 -5.7598 1.9714 12 1 3.8916 -6.6196 1.9288 13 1 6.2806 -6.5417 1.5197 14 1 5.3243 -5.2870 3.3615 15 6 4.2804 0.0536 1.8124 16 8 5.4848 0.0100 1.6769 17 6 3.6584 1.1119 2.6868 18 7 4.7173 1.8720 3.3642 19 6 5.4512 1.0225 4.3119 20 6 4.1674 3.0569 4.0361 21 6 3.9334 4.2476 3.0915 22 6 4.4602 5.1468 4.2247 23 6 5.2321 3.9185 4.7350 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.7470 1.9315 0.9290 29 1 3.1268 1.4436 -0.0842 30 1 1.6096 1.9800 -0.8450 31 1 1.5937 -1.7143 1.3031 32 1 1.7645 -0.1506 2.1362 33 1 3.4523 -2.2220 -0.3995 34 1 5.0716 -1.6237 0.0341 35 1 5.6193 -5.1773 -0.7623 36 1 3.0183 0.6381 3.4311 37 1 3.0628 1.7871 2.0723 38 1 5.9067 0.1899 3.7759 39 1 6.2288 1.6102 4.7996 40 1 4.7620 0.6374 5.0634 41 1 3.3095 2.8254 4.6676 42 1 4.5732 4.2372 2.2091 43 1 2.8833 4.4153 2.8522 44 1 3.6819 5.4878 4.9073 45 1 5.1048 5.9547 3.8785 46 1 5.2291 3.8209 5.8207 47 1 6.2281 3.8169 4.3037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900402251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:33 Heat of formation + Delta-G solvation = -16.180524 kcal Electronic energy + Delta-G solvation = -23758.369341 eV Core-core repulsion = 20555.833585 eV Total energy + Delta-G solvation = -3202.535755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73982 -38.66090 -36.30544 -34.72568 -33.52212 -32.23514 -28.90735 -27.24523 -26.89815 -26.07301 -25.37165 -25.15073 -23.08611 -21.71550 -20.17836 -19.32567 -18.14360 -16.76926 -16.43413 -16.02189 -15.31942 -15.25620 -14.99971 -14.48796 -14.26020 -13.96269 -13.76827 -13.29264 -13.01185 -12.68343 -12.43052 -12.42290 -12.22844 -12.00610 -11.76501 -11.67839 -11.52155 -11.33309 -11.16839 -10.90770 -10.88496 -10.78028 -10.68279 -10.53595 -10.48582 -10.38649 -10.23404 -10.08986 -9.57404 -8.78771 -8.41327 -8.05267 -7.54953 -6.01964 -4.06746 3.30374 3.37127 3.40413 3.52427 3.76257 4.29991 4.46647 4.54674 4.65605 4.80090 4.89476 5.07105 5.09652 5.15921 5.31775 5.36575 5.46202 5.50540 5.54936 5.61459 5.70483 5.73656 5.75223 5.79415 5.82490 5.83416 5.88241 5.91490 5.99626 6.09758 6.18380 6.21836 6.29216 6.31906 6.48202 6.49914 6.58038 7.03989 7.21431 7.33580 7.51848 7.62631 7.95629 8.27279 8.51805 8.93978 9.21375 9.58605 11.05853 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015598 B = 0.005184 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.627891 B = 5399.703241 C = 6689.231157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.248 3.752 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.510 3.490 16 O -0.526 6.526 17 C 0.027 3.973 18 N -0.510 5.510 19 C 0.021 3.979 20 C 0.051 3.949 21 C -0.127 4.127 22 C -0.142 4.142 23 C -0.128 4.128 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.015 0.985 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 15.622 6.774 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.204 4.204 4 C -0.009 4.009 5 N -0.331 5.331 6 C 0.129 3.871 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.296 3.704 16 O -0.402 6.402 17 C -0.103 4.103 18 N -0.234 5.234 19 C -0.127 4.127 20 C -0.058 4.058 21 C -0.165 4.165 22 C -0.180 4.180 23 C -0.166 4.166 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.322 15.603 6.204 18.318 hybrid contribution -0.610 -1.308 1.207 1.882 sum -7.932 14.295 7.411 17.949 Atomic orbital electron populations 1.21759 0.95116 1.01803 1.01304 1.21567 0.95318 0.96543 1.00219 1.21956 1.01696 0.95932 1.00844 1.21521 0.82015 1.00938 0.96384 1.48186 1.05090 1.28148 1.51695 1.19217 0.94472 0.82506 0.90931 1.21439 1.40993 0.97339 0.96680 0.92643 1.24923 0.95292 0.98678 0.95134 1.69934 1.42052 1.27825 1.13479 0.86532 0.77674 0.82432 0.80979 1.20688 1.21090 1.19969 1.20099 0.87391 0.81905 0.81002 1.90637 1.14331 1.72769 1.62423 1.22318 0.93795 0.96296 0.97939 1.61922 1.24673 1.07257 1.29551 1.22482 0.97618 0.98235 0.94332 1.23212 0.96836 0.89913 0.95817 1.23006 1.01047 0.94650 0.97833 1.22744 0.99947 0.96744 0.98545 1.22963 0.99008 0.95190 0.99455 0.92982 0.92843 0.92466 0.90362 0.93027 0.92270 0.92954 0.90320 0.91834 0.95180 0.93821 0.92761 0.93105 0.87948 0.89147 0.91708 0.96604 0.92168 0.89016 0.91928 0.90525 0.91222 0.91905 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.15 0.34 -1.23 16 2 C -0.12 -1.64 3.11 -90.62 -0.28 -1.92 16 3 C -0.15 -1.91 7.59 37.16 0.28 -1.63 16 4 C 0.12 1.89 4.89 -4.04 -0.02 1.87 16 5 N -0.60 -12.64 2.26 -175.05 -0.40 -13.04 16 6 C 0.25 6.49 5.22 -5.20 -0.03 6.47 16 7 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.51 10.74 6.06 -10.98 -0.07 10.68 16 16 O -0.53 -13.36 14.16 5.56 0.08 -13.28 16 17 C 0.03 0.44 3.78 -4.97 -0.02 0.42 16 18 N -0.51 -7.96 4.42 -235.35 -1.04 -9.00 16 19 C 0.02 0.34 9.04 60.07 0.54 0.88 16 20 C 0.05 0.61 3.18 -66.91 -0.21 0.40 16 21 C -0.13 -1.35 7.59 -25.82 -0.20 -1.54 16 22 C -0.14 -1.27 8.09 -25.82 -0.21 -1.48 16 23 C -0.13 -1.35 6.57 -25.92 -0.17 -1.52 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 28 H 0.05 0.59 6.50 -51.93 -0.34 0.25 16 29 H 0.06 0.92 6.87 -51.93 -0.36 0.56 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 32 H 0.06 0.88 6.08 -51.93 -0.32 0.57 16 33 H 0.03 0.80 7.94 -51.92 -0.41 0.39 16 34 H 0.04 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.05 0.77 7.32 -51.93 -0.38 0.39 16 37 H 0.10 1.44 4.52 -51.93 -0.23 1.21 16 38 H 0.09 1.79 6.09 -51.93 -0.32 1.47 16 39 H 0.06 0.91 7.00 -51.93 -0.36 0.54 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.05 7.97 -51.93 -0.41 0.64 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.03 363.59 -9.16 -41.19 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.54 Total: -0.16 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -0.46 Total: -2.16 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.70 Total: -47.97 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.03 -9.16 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900402251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.010 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds