Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 C 1.53008 * 109.46864 * 240.00439 * 2 1 3 5 5 N 1.46899 * 109.47293 * 120.00488 * 2 1 3 6 6 C 1.46896 * 111.00159 * 59.99795 * 5 2 1 7 7 C 1.52997 * 109.47114 * 179.97438 * 6 5 2 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46761 * 60.00209 * 16 14 12 18 18 H 1.48496 * 109.46664 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47077 * 300.00223 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09005 * 109.46721 * 299.99839 * 1 2 3 25 25 H 1.08995 * 109.46917 * 59.99232 * 1 2 3 26 26 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46721 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47163 * 300.00486 * 3 2 1 29 29 H 1.08993 * 109.46837 * 60.00443 * 3 2 1 30 30 H 1.08997 * 109.46851 * 299.99734 * 4 2 1 31 31 H 1.09000 * 109.47192 * 59.99696 * 4 2 1 32 32 H 1.08996 * 109.47241 * 180.02562 * 4 2 1 33 33 H 1.00907 * 110.99807 * 183.95070 * 5 2 1 34 34 H 1.09001 * 109.47271 * 60.00184 * 6 5 2 35 35 H 1.09004 * 109.47041 * 300.00031 * 6 5 2 36 36 H 1.09001 * 109.46832 * 59.99999 * 7 6 5 37 37 H 1.09000 * 109.47611 * 300.00296 * 7 6 5 38 38 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 39 39 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 40 40 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 41 41 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 42 42 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 43 43 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 44 44 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 45 45 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 46 46 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 47 47 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 2.0197 -0.6926 1.1994 6 6 1.5487 -2.0836 1.2332 7 6 2.0784 -2.7708 2.4934 8 6 1.5946 -4.1977 2.5285 9 8 0.8955 -4.6231 1.6335 10 7 1.9389 -5.0009 3.5546 11 6 1.4691 -6.3881 3.5883 12 6 2.4681 -7.2740 2.8896 13 1 3.3633 -6.8464 2.4626 14 6 2.2394 -8.6304 2.7953 15 7 1.1491 -9.1510 3.3147 16 14 3.4774 -9.7283 1.9285 17 1 4.7901 -9.6328 2.6160 18 1 3.0011 -11.1344 1.9629 19 1 3.6246 -9.2904 0.5173 20 6 2.7829 -4.4867 4.6359 21 6 1.8989 -3.8914 5.7337 22 6 2.0282 -2.3920 6.0091 23 6 2.5887 -3.4046 7.0097 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2492 33 1 3.0263 -0.6502 1.2557 34 1 1.9122 -2.6118 0.3518 35 1 0.4588 -2.0980 1.2418 36 1 1.7153 -2.2426 3.3751 37 1 3.1682 -2.7563 2.4845 38 1 1.3604 -6.7098 4.6241 39 1 0.5057 -6.4579 3.0832 40 1 0.9880 -10.1052 3.2481 41 1 3.3783 -5.3004 5.0503 42 1 3.4453 -3.7148 4.2443 43 1 0.9102 -4.3387 5.8354 44 1 2.7427 -1.8295 5.4081 45 1 1.1242 -1.8524 6.2919 46 1 2.0534 -3.5313 7.9508 47 1 3.6721 -3.5085 7.0672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931937130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = -24.777386 kcal Electronic energy + Delta-G solvation = -23026.752325 eV Core-core repulsion = 19823.843782 eV Total energy + Delta-G solvation = -3202.908543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.34683 -38.24873 -37.09877 -34.41820 -33.07632 -32.44149 -29.15812 -27.67511 -27.43396 -27.35474 -25.96950 -23.49567 -22.24407 -21.68338 -20.60384 -19.34997 -18.25538 -16.57927 -16.45571 -15.93052 -15.33452 -15.22195 -14.93521 -14.46421 -14.37797 -14.10431 -14.08099 -13.42955 -13.07313 -12.69292 -12.46345 -12.29043 -12.13575 -11.98188 -11.75936 -11.73084 -11.61146 -11.38580 -11.25576 -11.20478 -11.06259 -10.89656 -10.82114 -10.61715 -10.55492 -10.29593 -10.06539 -9.76036 -9.60766 -8.82588 -8.41400 -8.38764 -7.63335 -6.02370 -4.07003 3.32338 3.36831 3.38874 3.49822 3.76721 3.97895 4.27722 4.47341 4.73624 4.83855 4.93867 5.04916 5.08695 5.13611 5.23855 5.31619 5.35189 5.44239 5.50967 5.52698 5.54510 5.65164 5.72181 5.73784 5.76474 5.81302 5.84562 5.93335 5.97058 6.03185 6.09489 6.14949 6.18145 6.22660 6.29660 6.33367 6.50573 7.06665 7.10847 7.39886 7.48022 7.58623 7.94296 8.26191 8.47341 8.92515 9.14827 9.57996 11.05687 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.004567 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.432537 B = 6129.759532 C = 7604.275736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.184 4.184 5 N -0.680 5.680 6 C 0.069 3.931 7 C -0.139 4.139 8 C 0.508 3.492 9 O -0.545 6.545 10 N -0.595 5.595 11 C 0.246 3.754 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.143 3.857 21 C -0.165 4.165 22 C -0.182 4.182 23 C -0.178 4.178 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.336 0.664 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 19.181 0.290 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.195 4.195 4 C -0.243 4.243 5 N -0.311 5.311 6 C -0.060 4.060 7 C -0.179 4.179 8 C 0.295 3.705 9 O -0.423 6.423 10 N -0.326 5.326 11 C 0.127 3.873 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.019 3.981 21 C -0.184 4.184 22 C -0.219 4.219 23 C -0.215 4.215 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.291 18.979 0.243 19.118 hybrid contribution 1.311 -1.176 -1.009 2.030 sum 3.602 17.803 -0.766 18.180 Atomic orbital electron populations 1.21899 0.93860 1.02495 1.01687 1.20910 0.95678 0.93845 0.88165 1.21817 1.00693 0.94986 1.01987 1.22585 1.01052 1.01845 0.98862 1.60700 1.15772 1.15483 1.39173 1.21755 1.01354 0.86591 0.96282 1.21664 1.01600 0.94242 1.00442 1.20285 0.81015 0.87009 0.82202 1.90661 1.38584 1.76309 1.36723 1.48171 1.49888 1.13875 1.20663 1.19257 0.96176 0.74421 0.97443 1.21399 1.06406 0.92142 1.36527 0.92614 1.24925 0.95612 0.97955 0.95560 1.69923 1.25515 1.12688 1.45261 0.86578 0.81275 0.79404 0.80275 1.20261 1.21170 1.20248 1.20998 0.91684 0.98629 0.86812 1.22928 1.01823 0.96268 0.97409 1.23039 1.02998 0.92293 1.03605 1.22893 1.00403 1.04362 0.93877 0.91922 0.92608 0.92087 0.92915 0.92373 0.91852 0.91757 0.92295 0.92825 0.84639 0.94028 0.89993 0.88534 0.90123 0.95036 0.93953 0.92697 0.89659 0.91445 0.87492 0.88772 0.89214 0.89086 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.24 37.16 0.31 -1.20 16 2 C 0.11 1.09 0.97 -131.59 -0.13 0.96 16 3 C -0.14 -1.17 8.73 37.16 0.32 -0.84 16 4 C -0.18 -1.94 8.23 37.16 0.31 -1.63 16 5 N -0.68 -7.79 6.09 -99.96 -0.61 -8.40 16 6 C 0.07 1.00 4.19 -3.83 -0.02 0.98 16 7 C -0.14 -2.08 4.51 -27.88 -0.13 -2.21 16 8 C 0.51 10.57 7.67 -10.98 -0.08 10.49 16 9 O -0.54 -13.76 15.56 5.56 0.09 -13.67 16 10 N -0.60 -12.55 2.46 -175.06 -0.43 -12.98 16 11 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 12 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 13 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 16 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.14 2.33 5.49 -4.04 -0.02 2.31 16 21 C -0.16 -2.33 5.95 -90.62 -0.54 -2.87 16 22 C -0.18 -2.07 9.18 -26.73 -0.25 -2.31 16 23 C -0.18 -2.03 10.25 -26.73 -0.27 -2.30 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.74 6.40 -51.93 -0.33 0.41 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.34 3.46 8.72 -39.29 -0.34 3.11 16 34 H 0.04 0.66 6.26 -51.93 -0.33 0.34 16 35 H 0.08 1.30 6.26 -51.93 -0.33 0.98 16 36 H 0.10 1.32 6.84 -51.93 -0.36 0.97 16 37 H 0.08 1.07 7.40 -51.93 -0.38 0.69 16 38 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 39 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 42 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 43 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 44 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 45 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 0.98 8.14 -51.94 -0.42 0.56 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -31.91 373.26 -9.10 -41.01 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.55 Total: 3.31 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.94 Total: -5.83 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.30 Total: -47.41 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.91 -9.10 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931937130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.236 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds