Wall clock time and date at job start Tue Mar 31 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46862 * 2 1 4 4 C 1.52999 * 109.47094 * 239.99730 * 2 1 3 5 5 N 1.46498 * 109.46895 * 119.99914 * 2 1 3 6 6 C 1.34774 * 120.00418 * 59.99849 * 5 2 1 7 7 O 1.21282 * 119.99649 * 0.02562 * 6 5 2 8 8 C 1.50696 * 120.00529 * 179.97438 * 6 5 2 9 9 H 1.08998 * 110.33677 * 299.20581 * 8 6 5 10 10 C 1.54913 * 110.36781 * 61.45723 * 8 6 5 11 11 C 1.55143 * 101.68536 * 155.99241 * 10 8 6 12 12 C 1.54359 * 103.00080 * 324.39630 * 11 10 8 13 13 N 1.47442 * 107.24925 * 22.22681 * 12 11 10 14 14 C 1.46905 * 110.99971 * 123.29559 * 13 12 11 15 15 C 1.52996 * 109.46895 * 54.39693 * 14 13 12 16 16 C 1.53012 * 109.46687 * 174.66417 * 15 14 13 17 17 C 1.50700 * 109.46650 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00585 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99303 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00181 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46686 * 59.99971 * 21 19 17 23 23 H 1.48497 * 109.47243 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47461 * 300.00188 * 21 19 17 25 25 H 1.09000 * 109.46751 * 300.00381 * 1 2 3 26 26 H 1.08999 * 109.46666 * 60.00478 * 1 2 3 27 27 H 1.08997 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46902 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47090 * 299.99263 * 3 2 1 30 30 H 1.08997 * 109.47359 * 59.99915 * 3 2 1 31 31 H 1.08997 * 109.46921 * 299.99976 * 4 2 1 32 32 H 1.09004 * 109.47075 * 60.00230 * 4 2 1 33 33 H 1.09006 * 109.46877 * 180.02562 * 4 2 1 34 34 H 0.97002 * 119.99916 * 240.00044 * 5 2 1 35 35 H 1.09001 * 110.98847 * 274.09947 * 10 8 6 36 36 H 1.08993 * 110.99614 * 37.88447 * 10 8 6 37 37 H 1.09009 * 110.70343 * 82.74545 * 11 10 8 38 38 H 1.09001 * 110.70583 * 205.97724 * 11 10 8 39 39 H 1.09002 * 109.85032 * 262.83926 * 12 11 10 40 40 H 1.08997 * 110.04561 * 141.73214 * 12 11 10 41 41 H 1.09004 * 109.46728 * 174.40233 * 14 13 12 42 42 H 1.09005 * 109.46752 * 294.39593 * 14 13 12 43 43 H 1.08997 * 109.47550 * 294.66168 * 15 14 13 44 44 H 1.08996 * 109.47492 * 54.66958 * 15 14 13 45 45 H 1.08997 * 109.46922 * 300.00135 * 16 15 14 46 46 H 1.08996 * 109.46713 * 60.00064 * 16 15 14 47 47 H 0.96999 * 119.99764 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 1.6928 -1.9809 1.4096 7 8 0.9959 -2.5704 0.6110 8 6 2.1955 -2.6915 2.6397 9 1 3.2853 -2.7121 2.6465 10 6 1.6613 -1.9991 3.9184 11 6 1.7273 -3.1542 4.9521 12 6 1.3677 -4.3960 4.1086 13 7 1.6543 -4.0659 2.7004 14 6 2.5966 -5.0291 2.1152 15 6 2.0569 -6.4484 2.3023 16 6 2.9694 -7.4405 1.5780 17 6 2.4375 -8.8385 1.7617 18 1 1.5389 -9.0031 2.3378 19 6 3.0988 -9.9075 1.1952 20 7 4.1933 -9.7071 0.4943 21 14 2.4400 -11.6405 1.4235 22 1 1.0689 -11.7270 0.8597 23 1 3.3254 -12.6033 0.7206 24 1 2.4014 -11.9688 2.8712 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2489 34 1 2.5760 -0.2192 1.8347 35 1 2.3079 -1.1730 4.2143 36 1 0.6354 -1.6586 3.7786 37 1 2.7325 -3.2461 5.3636 38 1 0.9968 -3.0025 5.7467 39 1 0.3097 -4.6299 4.2266 40 1 1.9727 -5.2473 4.4204 41 1 2.7138 -4.8221 1.0514 42 1 3.5629 -4.9393 2.6115 43 1 2.0291 -6.6895 3.3649 44 1 1.0505 -6.5120 1.8887 45 1 2.9973 -7.1994 0.5154 46 1 3.9759 -7.3769 1.9915 47 1 4.6587 -10.4593 0.0961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932440598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:01 Heat of formation + Delta-G solvation = -50.190301 kcal Electronic energy + Delta-G solvation = -23054.571417 eV Core-core repulsion = 19850.560887 eV Total energy + Delta-G solvation = -3204.010530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37747 -38.55296 -36.22411 -34.32568 -32.56503 -31.98590 -30.07648 -29.01610 -27.57948 -27.32855 -26.06602 -23.57994 -22.44934 -21.44569 -20.22050 -19.53260 -19.25567 -17.38622 -16.49128 -16.00621 -15.61565 -15.13930 -14.80620 -14.38961 -14.20428 -14.14007 -13.77081 -13.59073 -13.28071 -12.79819 -12.58685 -12.31867 -12.25412 -12.21386 -12.02233 -11.91721 -11.69343 -11.41269 -11.30450 -11.23058 -11.08745 -11.03477 -10.77778 -10.69152 -10.48446 -10.38550 -9.59739 -9.35269 -9.25155 -9.05762 -8.99359 -8.27494 -7.97496 -5.93115 -3.94859 2.81761 3.03608 3.38294 3.42005 3.45160 4.18603 4.46410 4.52036 4.56499 4.66777 4.75412 4.89245 4.91145 5.08633 5.21670 5.30792 5.42542 5.42801 5.43926 5.61074 5.61469 5.64054 5.65629 5.69663 5.75000 5.82307 5.85708 5.86174 5.97709 6.04374 6.23256 6.25128 6.30688 6.39239 6.58264 6.77871 6.85386 7.14099 7.28819 7.43828 7.61287 7.75816 7.92120 8.07776 8.43671 8.51160 9.12043 9.68556 11.18430 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.003472 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.775671 B = 8062.564056 C = 8915.381602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 C -0.154 4.154 4 C -0.166 4.166 5 N -0.732 5.732 6 C 0.524 3.476 7 O -0.504 6.504 8 C 0.051 3.949 9 H 0.076 0.924 10 C -0.117 4.117 11 C -0.141 4.141 12 C 0.039 3.961 13 N -0.505 5.505 14 C 0.056 3.944 15 C -0.107 4.107 16 C 0.023 3.977 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.395 0.605 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.012 0.988 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 24.643 4.998 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.085 3.915 3 C -0.211 4.211 4 C -0.224 4.224 5 N -0.387 5.387 6 C 0.309 3.691 7 O -0.376 6.376 8 C -0.062 4.062 9 H 0.094 0.906 10 C -0.155 4.155 11 C -0.179 4.179 12 C -0.088 4.088 13 N -0.229 5.229 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.014 4.014 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.228 0.772 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.031 0.969 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.962 24.048 3.990 24.697 hybrid contribution 0.857 -0.693 0.792 1.358 sum -3.105 23.355 4.782 24.041 Atomic orbital electron populations 1.22223 0.94370 1.04253 1.01295 1.20273 0.94356 0.91461 0.85427 1.22079 1.01497 0.94761 1.02796 1.22241 1.00871 1.03117 0.96126 1.46182 1.54904 1.12322 1.25278 1.20444 0.80321 0.81164 0.87197 1.90659 1.35794 1.65584 1.45592 1.22516 0.98564 0.91656 0.93421 0.90590 1.22655 1.01971 0.97668 0.93192 1.22814 1.02008 0.95056 0.98051 1.22914 1.02212 0.97032 0.86662 1.63218 1.43782 0.99462 1.16482 1.22458 0.91967 0.93170 0.99548 1.21721 1.00868 0.91670 1.00194 1.19056 0.94177 0.92687 0.95520 1.21222 1.10221 0.91799 1.32349 0.92743 1.25025 0.95016 0.99159 0.95309 1.69957 1.17802 1.31185 1.34722 0.86661 0.78865 0.84288 0.78201 1.20208 1.21344 1.20305 0.92962 0.92183 0.90059 0.92050 0.91008 0.92116 0.90020 0.92123 0.92820 0.77195 0.90612 0.90369 0.91306 0.90599 0.90524 0.91314 0.90933 0.95614 0.93440 0.92336 0.96531 0.96921 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.40 37.16 0.31 -1.37 16 2 C 0.17 1.63 1.06 -131.82 -0.14 1.49 16 3 C -0.15 -0.99 8.59 37.16 0.32 -0.67 16 4 C -0.17 -1.83 8.40 37.16 0.31 -1.52 16 5 N -0.73 -7.24 5.04 -47.61 -0.24 -7.48 16 6 C 0.52 7.18 6.63 -10.99 -0.07 7.11 16 7 O -0.50 -9.07 12.70 5.56 0.07 -9.00 16 8 C 0.05 0.65 2.84 -67.34 -0.19 0.46 16 9 H 0.08 0.92 7.70 -51.93 -0.40 0.52 16 10 C -0.12 -1.12 6.41 -24.59 -0.16 -1.28 16 11 C -0.14 -1.44 6.95 -24.88 -0.17 -1.61 16 12 C 0.04 0.55 6.20 -2.81 -0.02 0.53 16 13 N -0.51 -8.24 4.46 -224.72 -1.00 -9.24 16 14 C 0.06 1.06 4.85 -3.82 -0.02 1.04 16 15 C -0.11 -2.36 4.80 -26.73 -0.13 -2.49 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 18 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 21 Si 0.89 22.32 29.54 -169.99 -5.02 17.29 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.11 6.17 -51.93 -0.32 0.79 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 1.19 6.17 -51.93 -0.32 0.87 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.39 2.76 8.46 -40.82 -0.35 2.42 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.79 8.05 -51.93 -0.42 0.38 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.03 5.96 -51.93 -0.31 0.72 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.03 0.47 7.97 -51.93 -0.41 0.05 16 43 H 0.05 1.00 6.37 -51.93 -0.33 0.67 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -33.73 366.04 -9.19 -42.91 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.74 Total: -1.13 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.50 Total: -11.83 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.51 Total: -43.76 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.73 -9.19 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932440598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.276 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds