Wall clock time and date at job start Tue Mar 31 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47035 * 2 1 4 4 C 1.53002 * 109.47625 * 239.99787 * 2 1 3 5 5 N 1.46500 * 109.47180 * 119.99560 * 2 1 3 6 6 C 1.34779 * 119.99460 * 60.00295 * 5 2 1 7 7 O 1.21271 * 120.00490 * 359.97438 * 6 5 2 8 8 C 1.50704 * 119.99628 * 180.02562 * 6 5 2 9 9 H 1.09002 * 110.37009 * 59.29707 * 8 6 5 10 10 C 1.54385 * 110.40854 * 296.94677 * 8 6 5 11 11 C 1.54266 * 105.05754 * 217.25100 * 10 8 6 12 12 C 1.54375 * 105.06062 * 0.02562 * 11 10 8 13 13 N 1.48556 * 110.50887 * 181.71750 * 8 6 5 14 14 C 1.46901 * 110.99998 * 277.86514 * 13 8 6 15 15 C 1.52999 * 109.47080 * 170.00030 * 14 13 8 16 16 C 1.53004 * 109.46963 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46856 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99583 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00328 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99747 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46554 * 60.00347 * 21 19 17 23 23 H 1.48500 * 109.46705 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47135 * 300.00213 * 21 19 17 25 25 H 1.08991 * 109.47536 * 300.00477 * 1 2 3 26 26 H 1.09004 * 109.46694 * 60.00391 * 1 2 3 27 27 H 1.09000 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46932 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46744 * 299.99395 * 3 2 1 30 30 H 1.09001 * 109.46884 * 59.99672 * 3 2 1 31 31 H 1.08997 * 109.46854 * 300.00600 * 4 2 1 32 32 H 1.09005 * 109.46640 * 59.99679 * 4 2 1 33 33 H 1.08998 * 109.47380 * 179.97438 * 4 2 1 34 34 H 0.96995 * 120.00350 * 240.00856 * 5 2 1 35 35 H 1.08995 * 110.32619 * 336.14630 * 10 8 6 36 36 H 1.09000 * 110.32317 * 98.35663 * 10 8 6 37 37 H 1.09001 * 110.32231 * 118.89861 * 11 10 8 38 38 H 1.08996 * 110.32002 * 241.00300 * 11 10 8 39 39 H 1.08996 * 110.41381 * 142.63179 * 12 11 10 40 40 H 1.09007 * 110.41450 * 264.95351 * 12 11 10 41 41 H 1.09001 * 109.47468 * 290.00034 * 14 13 8 42 42 H 1.08996 * 109.47029 * 50.00191 * 14 13 8 43 43 H 1.08993 * 109.47572 * 299.99778 * 15 14 13 44 44 H 1.09004 * 109.47327 * 60.00375 * 15 14 13 45 45 H 1.09001 * 109.47460 * 299.99927 * 16 15 14 46 46 H 1.08996 * 109.47154 * 60.00157 * 16 15 14 47 47 H 0.96997 * 120.00094 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.6927 -1.9809 1.4095 7 8 0.9952 -2.5702 0.6115 8 6 2.1946 -2.6911 2.6403 9 1 1.8492 -2.1814 3.5398 10 6 3.7363 -2.7706 2.6249 11 6 4.0723 -4.1527 3.2224 12 6 2.7053 -4.7920 3.5478 13 7 1.7466 -4.1075 2.6429 14 6 0.3717 -4.2239 3.1470 15 6 -0.1418 -5.6446 2.9045 16 6 -1.5740 -5.7656 3.4290 17 6 -2.0796 -7.1652 3.1907 18 1 -1.4432 -7.8952 2.7127 19 6 -3.3546 -7.5137 3.5831 20 7 -4.1297 -6.6247 4.1647 21 14 -3.9815 -9.2484 3.2871 22 1 -3.1098 -10.2177 3.9982 23 1 -5.3716 -9.3658 3.7963 24 1 -3.9618 -9.5402 1.8312 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7209 -1.2494 34 1 2.5759 -0.2191 1.8347 35 1 4.1089 -2.6992 1.6032 36 1 4.1624 -1.9784 3.2404 37 1 4.6098 -4.7595 2.4938 38 1 4.6648 -4.0387 4.1301 39 1 2.7270 -5.8618 3.3403 40 1 2.4403 -4.6131 4.5899 41 1 0.3571 -4.0097 4.2156 42 1 -0.2680 -3.5123 2.6250 43 1 -0.1273 -5.8588 1.8360 44 1 0.4980 -6.3563 3.4265 45 1 -1.5890 -5.5513 4.4976 46 1 -2.2135 -5.0541 2.9067 47 1 -5.0266 -6.8699 4.4411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932440599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:05 Heat of formation + Delta-G solvation = -51.787230 kcal Electronic energy + Delta-G solvation = -23135.071375 eV Core-core repulsion = 19930.991597 eV Total energy + Delta-G solvation = -3204.079778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39767 -38.45391 -36.20484 -34.32589 -32.56533 -32.01502 -30.09990 -29.00126 -27.56618 -27.30958 -26.10070 -23.49965 -22.39773 -21.11054 -20.25686 -19.76629 -19.43455 -17.32479 -16.40125 -15.94607 -15.59363 -15.06802 -14.74773 -14.40017 -14.35682 -14.13208 -13.77422 -13.51764 -13.26438 -12.74185 -12.52431 -12.45375 -12.26547 -12.19812 -12.07837 -11.84800 -11.64283 -11.41077 -11.28636 -11.18775 -11.09240 -11.01985 -10.73205 -10.62576 -10.46688 -10.41487 -9.50821 -9.35216 -9.22289 -9.05859 -8.97224 -8.25344 -8.17543 -5.90868 -3.92275 2.80091 3.03731 3.39994 3.43358 3.46850 4.21163 4.48509 4.53521 4.57372 4.67989 4.75907 4.89368 4.91104 5.08219 5.21280 5.32031 5.44265 5.44762 5.44935 5.62508 5.62974 5.66023 5.67236 5.67672 5.75381 5.81870 5.83856 5.87757 6.03981 6.07841 6.17160 6.25972 6.33188 6.44371 6.58445 6.78164 6.84600 7.08913 7.30701 7.41865 7.59167 7.79037 7.95888 8.10521 8.41678 8.54424 9.14672 9.70939 11.20731 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.003736 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.387090 B = 7492.847986 C = 8533.765638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.170 3.830 3 C -0.154 4.154 4 C -0.164 4.164 5 N -0.732 5.732 6 C 0.524 3.476 7 O -0.502 6.502 8 C 0.039 3.961 9 H 0.072 0.928 10 C -0.111 4.111 11 C -0.122 4.122 12 C 0.033 3.967 13 N -0.484 5.484 14 C 0.050 3.950 15 C -0.098 4.098 16 C 0.023 3.977 17 C -0.516 4.516 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.257 16.825 -4.299 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.085 3.915 3 C -0.211 4.211 4 C -0.222 4.222 5 N -0.386 5.386 6 C 0.309 3.691 7 O -0.375 6.375 8 C -0.074 4.074 9 H 0.090 0.910 10 C -0.150 4.150 11 C -0.161 4.161 12 C -0.095 4.095 13 N -0.208 5.208 14 C -0.077 4.077 15 C -0.136 4.136 16 C -0.015 4.015 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.228 0.772 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.530 16.163 -5.363 24.440 hybrid contribution -0.273 -0.247 1.100 1.160 sum 17.257 15.916 -4.264 23.860 Atomic orbital electron populations 1.22242 0.94202 1.04456 1.01494 1.20282 0.94470 0.91437 0.85319 1.22080 1.01350 0.94788 1.02902 1.22224 1.00615 1.03139 0.96185 1.46172 1.54878 1.12187 1.25379 1.20330 0.80154 0.81142 0.87436 1.90683 1.35594 1.65490 1.45695 1.22623 0.96186 0.92851 0.95716 0.91038 1.22237 0.92654 0.98135 1.01964 1.22292 0.97356 0.95653 1.00758 1.23148 0.91219 1.00274 0.94892 1.65183 1.03065 1.05535 1.47036 1.22461 0.87601 1.01106 0.96557 1.21538 0.98808 0.92096 1.01190 1.19065 0.89686 0.96855 0.95890 1.21231 0.98752 0.96894 1.38543 0.92731 1.25025 0.96957 0.97180 0.95371 1.69960 1.08629 1.33952 1.41218 0.86663 0.77728 0.85033 0.78606 1.20299 1.21363 1.20219 0.92815 0.92082 0.89968 0.92118 0.90985 0.92057 0.90021 0.92146 0.92967 0.77170 0.90813 0.90960 0.90883 0.91278 0.89458 0.93688 0.95345 0.91021 0.92414 0.93747 0.96993 0.96641 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 8.40 37.16 0.31 -1.59 16 2 C 0.17 1.67 1.06 -131.81 -0.14 1.53 16 3 C -0.15 -1.02 8.59 37.16 0.32 -0.70 16 4 C -0.16 -1.73 8.40 37.16 0.31 -1.42 16 5 N -0.73 -7.35 5.06 -47.60 -0.24 -7.59 16 6 C 0.52 7.27 6.23 -10.98 -0.07 7.20 16 7 O -0.50 -9.16 12.05 5.56 0.07 -9.10 16 8 C 0.04 0.50 2.67 -67.22 -0.18 0.32 16 9 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 10 C -0.11 -1.08 6.51 -25.34 -0.16 -1.24 16 11 C -0.12 -1.25 7.00 -25.35 -0.18 -1.43 16 12 C 0.03 0.44 5.91 -2.20 -0.01 0.43 16 13 N -0.48 -7.89 4.61 -223.52 -1.03 -8.92 16 14 C 0.05 0.96 4.63 -3.82 -0.02 0.95 16 15 C -0.10 -2.24 5.27 -26.73 -0.14 -2.38 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -15.39 9.11 -34.44 -0.31 -15.71 16 18 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -27.99 13.29 55.43 0.74 -27.25 16 21 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 1.14 6.17 -51.93 -0.32 0.82 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.39 2.80 8.47 -40.82 -0.35 2.46 16 35 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.25 7.85 -51.93 -0.41 0.84 16 40 H 0.04 0.60 7.75 -51.92 -0.40 0.20 16 41 H 0.03 0.53 7.77 -51.93 -0.40 0.12 16 42 H 0.07 1.49 7.35 -51.93 -0.38 1.10 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.04 0.97 7.47 -51.93 -0.39 0.58 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -34.06 366.82 -9.30 -43.36 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.83 Total: -1.51 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.51 Total: -11.99 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.54 Total: -43.77 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.06 -9.30 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932440599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.427 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds