Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.52998 * 109.47109 * 239.99761 * 2 1 3 5 5 N 1.46905 * 109.46815 * 120.00099 * 2 1 3 6 6 C 1.46893 * 111.00065 * 60.00081 * 5 2 1 7 7 C 1.53001 * 109.47019 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.47042 * 175.64906 * 7 6 5 9 9 O 1.21298 * 120.00017 * 353.77737 * 8 7 6 10 10 N 1.34775 * 120.00300 * 173.77927 * 8 7 6 11 11 C 1.37098 * 119.99482 * 356.36676 * 10 8 7 12 12 H 1.08002 * 120.00057 * 232.01097 * 11 10 8 13 13 C 1.38957 * 120.00066 * 52.01114 * 11 10 8 14 14 N 1.31416 * 119.99542 * 206.11366 * 13 11 10 15 15 Si 1.86793 * 120.00203 * 26.11385 * 13 11 10 16 16 H 1.48506 * 109.47205 * 89.67396 * 15 13 11 17 17 H 1.48499 * 109.47123 * 209.67323 * 15 13 11 18 18 H 1.48503 * 109.47298 * 329.67331 * 15 13 11 19 19 C 1.46495 * 120.00547 * 176.08779 * 10 8 7 20 20 C 1.54264 * 110.03733 * 237.91124 * 19 10 8 21 21 C 1.54961 * 104.16444 * 217.13662 * 20 19 10 22 22 C 1.54892 * 102.77687 * 37.88588 * 21 20 19 23 23 C 1.53875 * 110.03184 * 120.68977 * 19 10 8 24 24 H 1.08996 * 109.47295 * 300.00533 * 1 2 3 25 25 H 1.09010 * 109.46803 * 60.00237 * 1 2 3 26 26 H 1.08994 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47087 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46949 * 300.00283 * 3 2 1 29 29 H 1.09004 * 109.46848 * 59.99276 * 3 2 1 30 30 H 1.08994 * 109.47612 * 300.00204 * 4 2 1 31 31 H 1.09001 * 109.47186 * 60.00545 * 4 2 1 32 32 H 1.09000 * 109.47122 * 180.02562 * 4 2 1 33 33 H 1.00900 * 110.99557 * 183.95829 * 5 2 1 34 34 H 1.08995 * 109.47564 * 59.99715 * 6 5 2 35 35 H 1.09008 * 109.47001 * 299.99930 * 6 5 2 36 36 H 1.08998 * 109.47258 * 55.64903 * 7 6 5 37 37 H 1.08995 * 109.46950 * 295.64441 * 7 6 5 38 38 H 0.97001 * 119.99112 * 179.97438 * 14 13 11 39 39 H 1.08999 * 110.01740 * 359.29877 * 19 10 8 40 40 H 1.09010 * 110.48282 * 335.78381 * 20 19 10 41 41 H 1.08998 * 110.48809 * 98.42287 * 20 19 10 42 42 H 1.08997 * 110.71700 * 279.57437 * 21 20 19 43 43 H 1.08994 * 110.92529 * 156.28893 * 21 20 19 44 44 H 1.08996 * 110.48863 * 203.41132 * 22 21 20 45 45 H 1.09001 * 110.60094 * 80.81411 * 22 21 20 46 46 H 1.08994 * 110.03405 * 238.57104 * 23 19 10 47 47 H 1.08991 * 110.03210 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6926 1.1995 6 6 1.5486 -2.0835 1.2334 7 6 2.0771 -2.7703 2.4943 8 6 1.5077 -4.1627 2.5840 9 8 0.6678 -4.5269 1.7883 10 7 1.9317 -5.0033 3.5484 11 6 2.9338 -4.6184 4.4012 12 1 3.7960 -5.2533 4.5429 13 6 2.8402 -3.4114 5.0834 14 7 3.9310 -2.7902 5.4721 15 14 1.1640 -2.6721 5.4478 16 1 0.6761 -3.1733 6.7578 17 1 1.2754 -1.1920 5.4945 18 1 0.2079 -3.0632 4.3810 19 6 1.3178 -6.3259 3.6893 20 6 0.7314 -6.4882 5.1069 21 6 1.0102 -7.9697 5.4654 22 6 2.4107 -8.2133 4.8501 23 6 2.3848 -7.4225 3.5257 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.0261 -0.6501 1.2559 34 1 1.9120 -2.6118 0.3520 35 1 0.4587 -2.0979 1.2419 36 1 1.7777 -2.1981 3.3724 37 1 3.1648 -2.8248 2.4496 38 1 3.8656 -1.9475 5.9480 39 1 0.5330 -6.4543 2.9438 40 1 1.2381 -5.8244 5.8076 41 1 -0.3407 -6.2915 5.1011 42 1 0.2681 -8.6235 5.0073 43 1 1.0332 -8.1111 6.5458 44 1 2.5633 -9.2752 4.6574 45 1 3.1906 -7.8299 5.5080 46 1 2.1175 -8.0836 2.7013 47 1 3.3594 -6.9706 3.3419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933242033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = -43.670498 kcal Electronic energy + Delta-G solvation = -23932.244482 eV Core-core repulsion = 20728.516672 eV Total energy + Delta-G solvation = -3203.727810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.34271 -38.12859 -36.81553 -34.14535 -32.69808 -31.73972 -28.73178 -28.08271 -27.38341 -27.19065 -26.80984 -24.54680 -22.48904 -20.10550 -19.54732 -19.20755 -19.06705 -16.94898 -15.92238 -15.82362 -15.10345 -15.08259 -14.82207 -14.15075 -14.06931 -13.86676 -13.51440 -13.40395 -13.02328 -12.73035 -12.55592 -12.22737 -11.99516 -11.84327 -11.70694 -11.51245 -11.42195 -11.10249 -10.99488 -10.87313 -10.80290 -10.62418 -10.57639 -10.48304 -10.28848 -10.24687 -10.06301 -9.87619 -9.71433 -8.92279 -8.56059 -8.05754 -7.49939 -6.50314 -4.17829 3.14135 3.27221 3.34693 3.81359 4.13537 4.23065 4.69834 4.85415 4.95867 5.05384 5.24988 5.28108 5.29591 5.49416 5.61996 5.64358 5.75165 5.79984 5.86200 5.93075 5.99042 5.99744 6.01484 6.07601 6.13720 6.16425 6.19401 6.21983 6.30296 6.35698 6.41875 6.42433 6.45300 6.53311 6.60412 6.65890 6.82204 6.84826 6.96325 7.07716 7.42245 7.69816 7.75281 7.85999 8.51225 8.99841 9.34285 9.78793 10.59076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.005302 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.569943 B = 5279.863299 C = 5857.543253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.182 4.182 5 N -0.682 5.682 6 C 0.070 3.930 7 C -0.120 4.120 8 C 0.498 3.502 9 O -0.601 6.601 10 N -0.465 5.465 11 C -0.349 4.349 12 H 0.098 0.902 13 C 0.083 3.917 14 N -0.848 5.848 15 Si 0.854 3.146 16 H -0.281 1.281 17 H -0.278 1.278 18 H -0.260 1.260 19 C 0.129 3.871 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.340 0.660 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.276 0.724 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 1.216 -5.849 6.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 C -0.195 4.195 4 C -0.241 4.241 5 N -0.313 5.313 6 C -0.059 4.059 7 C -0.160 4.160 8 C 0.288 3.712 9 O -0.486 6.486 10 N -0.186 5.186 11 C -0.475 4.475 12 H 0.115 0.885 13 C -0.126 4.126 14 N -0.482 5.482 15 Si 0.680 3.320 16 H -0.208 1.208 17 H -0.203 1.203 18 H -0.185 1.185 19 C 0.025 3.975 20 C -0.171 4.171 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.517 1.420 -5.736 6.877 hybrid contribution -0.155 0.104 -0.104 0.213 sum -3.672 1.524 -5.840 7.065 Atomic orbital electron populations 1.21893 0.94145 1.02348 1.01475 1.20910 0.95526 0.93933 0.88322 1.21813 1.00811 0.95054 1.01801 1.22569 1.01104 1.01653 0.98784 1.60645 1.16265 1.15782 1.38615 1.21809 1.00963 0.86561 0.96560 1.21499 1.02885 0.93499 0.98108 1.20488 0.82797 0.87597 0.80340 1.90506 1.36497 1.78589 1.43042 1.43784 1.33906 1.12901 1.27968 1.18734 0.98522 1.05909 1.24384 0.88493 1.25572 0.96514 0.95976 0.94523 1.69800 1.27855 1.15123 1.35389 0.87260 0.86509 0.78982 0.79271 1.20825 1.20348 1.18486 1.21657 0.94671 0.84820 0.96343 1.22703 0.99653 0.96448 0.98248 1.22407 0.96960 0.96628 0.99751 1.22269 0.97383 0.98557 0.97265 1.22370 1.00684 0.96707 0.96568 0.92008 0.92779 0.92188 0.92814 0.92543 0.91876 0.91957 0.92523 0.92771 0.84163 0.94668 0.90477 0.90158 0.88515 0.91406 0.90076 0.89662 0.92903 0.92319 0.92169 0.92801 0.91376 0.92842 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.24 37.16 0.31 -1.60 16 2 C 0.10 1.42 0.97 -131.60 -0.13 1.30 16 3 C -0.14 -1.59 8.73 37.16 0.32 -1.27 16 4 C -0.18 -2.31 8.23 37.16 0.31 -2.00 16 5 N -0.68 -11.26 6.09 -99.96 -0.61 -11.87 16 6 C 0.07 1.34 4.29 -3.83 -0.02 1.32 16 7 C -0.12 -2.67 3.98 -27.88 -0.11 -2.78 16 8 C 0.50 12.14 5.80 -10.99 -0.06 12.08 16 9 O -0.60 -15.49 15.25 5.54 0.08 -15.40 16 10 N -0.46 -11.04 1.86 -106.54 -0.20 -11.23 16 11 C -0.35 -8.74 7.26 -14.93 -0.11 -8.85 16 12 H 0.10 2.58 7.39 -52.49 -0.39 2.20 16 13 C 0.08 2.12 4.08 -17.46 -0.07 2.05 16 14 N -0.85 -22.42 13.96 55.50 0.77 -21.65 16 15 Si 0.85 20.61 24.09 -169.99 -4.10 16.51 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.26 -6.54 5.95 56.52 0.34 -6.20 16 19 C 0.13 2.71 3.29 -66.82 -0.22 2.49 16 20 C -0.13 -2.55 6.42 -25.03 -0.16 -2.71 16 21 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 22 C -0.12 -1.86 6.83 -25.07 -0.17 -2.04 16 23 C -0.12 -2.29 6.26 -25.61 -0.16 -2.45 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 27 H 0.05 0.59 8.14 -51.94 -0.42 0.17 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.88 6.40 -51.93 -0.33 0.54 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.34 5.36 8.72 -39.29 -0.34 5.01 16 34 H 0.04 0.67 6.30 -51.93 -0.33 0.34 16 35 H 0.08 1.57 6.05 -51.92 -0.31 1.26 16 36 H 0.08 1.89 3.40 -51.93 -0.18 1.71 16 37 H 0.10 2.18 7.77 -51.93 -0.40 1.78 16 38 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 40 H 0.08 1.84 6.41 -51.92 -0.33 1.50 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.49 6.95 -51.93 -0.36 1.13 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -27.50 349.60 -7.59 -35.09 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.37 Total: 9.79 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.44 Total: -6.50 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.03 Total: -44.75 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.10 Total: 16.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.50 -7.59 -35.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933242033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.581 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds