Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.53000 * 109.47047 * 239.99973 * 2 1 3 5 5 N 1.46902 * 109.46741 * 120.00193 * 2 1 3 6 6 C 1.46898 * 111.00163 * 60.00131 * 5 2 1 7 7 C 1.52997 * 109.47080 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99852 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00061 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47126 * 90.00041 * 18 16 14 20 20 H 1.48500 * 109.47187 * 209.99810 * 18 16 14 21 21 H 1.48499 * 109.47129 * 329.99807 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.09007 * 109.46814 * 300.00195 * 1 2 3 25 25 H 1.08997 * 109.46775 * 59.99709 * 1 2 3 26 26 H 1.08995 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47387 * 299.99916 * 3 2 1 29 29 H 1.09000 * 109.47145 * 59.99750 * 3 2 1 30 30 H 1.09000 * 109.47352 * 300.00227 * 4 2 1 31 31 H 1.08997 * 109.47073 * 60.00501 * 4 2 1 32 32 H 1.08996 * 109.47091 * 180.02562 * 4 2 1 33 33 H 1.00898 * 111.00126 * 296.03893 * 5 2 1 34 34 H 1.08998 * 109.47488 * 59.99460 * 6 5 2 35 35 H 1.09004 * 109.46695 * 299.99191 * 6 5 2 36 36 H 1.08998 * 109.47350 * 59.99438 * 7 6 5 37 37 H 1.09003 * 109.47457 * 299.99450 * 7 6 5 38 38 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 39 39 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 40 40 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 41 41 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 42 42 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 43 43 H 0.97003 * 119.99843 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 45 45 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 46 46 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 47 47 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6926 1.1995 6 6 1.5486 -2.0836 1.2333 7 6 2.0781 -2.7707 2.4936 8 6 1.5944 -4.1976 2.5287 9 8 0.8954 -4.6231 1.6336 10 7 1.9394 -5.0011 3.5543 11 6 1.4761 -6.3945 3.6022 12 6 0.7824 -6.6407 4.9457 13 6 1.7318 -6.2576 6.0832 14 6 1.0650 -6.5302 7.4070 15 1 0.0644 -6.9355 7.4343 16 6 1.7325 -6.2621 8.5832 17 7 1.1505 -6.4995 9.7384 18 14 3.4636 -5.5616 8.5360 19 1 3.3972 -4.0781 8.5256 20 1 4.2140 -6.0151 9.7345 21 1 4.1558 -6.0347 7.3103 22 6 2.0766 -4.7699 5.9831 23 6 2.7854 -4.5027 4.6511 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.7503 -0.1990 2.0372 34 1 1.9120 -2.6119 0.3519 35 1 0.4587 -2.0979 1.2420 36 1 1.7151 -2.2426 3.3752 37 1 3.1680 -2.7564 2.4847 38 1 2.3284 -7.0667 3.5025 39 1 0.7724 -6.5738 2.7894 40 1 -0.1207 -6.0333 5.0055 41 1 0.5182 -7.6947 5.0310 42 1 2.6451 -6.8479 6.0083 43 1 1.6200 -6.3105 10.5659 44 1 1.1613 -4.1802 6.0331 45 1 2.7341 -4.4926 6.8070 46 1 2.9449 -3.4313 4.5304 47 1 3.7454 -5.0187 4.6378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935318321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = -49.031926 kcal Electronic energy + Delta-G solvation = -23030.126508 eV Core-core repulsion = 19826.166209 eV Total energy + Delta-G solvation = -3203.960299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96506 -38.54292 -37.08012 -33.62068 -33.34532 -31.56516 -30.71402 -28.95169 -27.69502 -27.53703 -26.42312 -23.64807 -22.65387 -22.12824 -19.89063 -19.52831 -18.39450 -17.06294 -16.68047 -16.14038 -15.78486 -15.27236 -15.07223 -14.60915 -14.45506 -14.11635 -13.60340 -13.55022 -13.27328 -13.00179 -12.81875 -12.60263 -12.34337 -12.27871 -12.10754 -12.06605 -11.95770 -11.93879 -11.54478 -11.32856 -11.07607 -11.04513 -10.84216 -10.73773 -10.21645 -10.18213 -9.78707 -9.53923 -9.33145 -9.11372 -8.60535 -8.59367 -8.20607 -6.12369 -4.11888 2.84319 3.17749 3.21814 3.29785 3.34452 3.94744 4.34150 4.56552 4.66531 4.76881 4.91305 4.94787 5.07132 5.15440 5.29359 5.32572 5.36325 5.50573 5.52222 5.53261 5.59916 5.62210 5.64444 5.65867 5.77565 5.79740 5.85462 5.85942 5.95988 5.97646 6.06773 6.09881 6.17484 6.27942 6.59978 6.61694 6.73528 6.85101 6.87909 7.15425 7.19509 7.44904 7.68544 7.73143 8.39924 8.47203 8.92024 9.49405 11.01053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.003509 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.387766 B = 7978.037934 C = 8485.338998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.141 4.141 5 N -0.681 5.681 6 C 0.070 3.930 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.556 6.556 10 N -0.602 5.602 11 C 0.108 3.892 12 C -0.113 4.113 13 C 0.015 3.985 14 C -0.513 4.513 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.297 1.297 21 H -0.265 1.265 22 C -0.135 4.135 23 C 0.102 3.898 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.339 0.661 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 12.931 -17.709 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.014 3.986 3 C -0.196 4.196 4 C -0.199 4.199 5 N -0.313 5.313 6 C -0.059 4.059 7 C -0.179 4.179 8 C 0.303 3.697 9 O -0.436 6.436 10 N -0.334 5.334 11 C -0.014 4.014 12 C -0.151 4.151 13 C -0.004 4.004 14 C -0.551 4.551 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.224 1.224 21 H -0.190 1.190 22 C -0.173 4.173 23 C -0.021 4.021 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.952 12.537 -18.262 22.501 hybrid contribution -0.007 0.559 0.700 0.896 sum 3.945 13.096 -17.562 22.260 Atomic orbital electron populations 1.22582 0.97094 1.02526 1.02116 1.20921 0.92227 0.94205 0.91242 1.21821 1.01883 0.94301 1.01585 1.21897 1.01797 1.00414 0.95793 1.60669 1.63377 1.02633 1.04576 1.21745 0.98140 0.88301 0.97753 1.21615 1.03289 0.93008 1.00001 1.20492 0.80072 0.87696 0.81431 1.90650 1.38935 1.76459 1.37519 1.48213 1.50629 1.12584 1.22014 1.21754 0.99073 0.80830 0.99762 1.21819 0.99038 1.01385 0.92842 1.19130 0.95612 0.90789 0.94911 1.21051 1.02965 1.42856 0.88256 0.90866 1.25056 0.97703 0.95170 0.95459 1.69903 1.37862 1.48662 0.97466 0.86860 0.85294 0.78988 0.77188 1.20520 1.22447 1.18964 1.22380 0.99937 1.01539 0.93483 1.21990 0.93633 0.98869 0.87615 0.92690 0.92160 0.91932 0.91776 0.92255 0.92782 0.92267 0.92483 0.91867 0.84295 0.89959 0.93954 0.89084 0.88296 0.92079 0.89912 0.92370 0.91355 0.95381 0.92640 0.91652 0.92363 0.90630 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.23 37.16 0.31 -1.27 16 2 C 0.10 0.90 0.97 -131.60 -0.13 0.78 16 3 C -0.14 -1.01 8.73 37.16 0.32 -0.68 16 4 C -0.14 -1.23 8.24 37.16 0.31 -0.92 16 5 N -0.68 -6.53 6.09 -99.96 -0.61 -7.13 16 6 C 0.07 0.80 4.19 -3.83 -0.02 0.78 16 7 C -0.14 -1.65 4.32 -27.88 -0.12 -1.77 16 8 C 0.52 8.14 7.70 -10.99 -0.08 8.05 16 9 O -0.56 -10.36 15.39 5.55 0.09 -10.27 16 10 N -0.60 -9.82 2.98 -172.52 -0.51 -10.34 16 11 C 0.11 1.83 6.42 -3.71 -0.02 1.81 16 12 C -0.11 -2.18 5.30 -26.61 -0.14 -2.32 16 13 C 0.01 0.32 1.66 -91.73 -0.15 0.17 16 14 C -0.51 -13.92 9.14 -34.44 -0.31 -14.23 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 17 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 18 Si 0.89 20.87 24.38 -169.99 -4.14 16.72 16 19 H -0.28 -6.28 6.86 56.52 0.39 -5.90 16 20 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16 22 C -0.14 -2.67 4.85 -26.59 -0.13 -2.80 16 23 C 0.10 1.59 6.35 -3.54 -0.02 1.57 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.57 6.40 -51.93 -0.33 0.24 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.34 2.96 8.72 -39.29 -0.34 2.62 16 34 H 0.08 1.03 6.26 -51.93 -0.33 0.71 16 35 H 0.04 0.53 6.26 -51.93 -0.33 0.21 16 36 H 0.09 0.99 7.70 -51.93 -0.40 0.59 16 37 H 0.10 1.07 7.95 -51.93 -0.41 0.66 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.21 3.24 -51.93 -0.17 1.04 16 46 H 0.08 0.97 5.97 -51.93 -0.31 0.66 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -30.42 351.96 -7.76 -38.18 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.36 Total: 2.86 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.29 Total: -9.06 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.35 Total: -43.74 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.42 -7.76 -38.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935318321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.851 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds