Wall clock time and date at job start Tue Mar 31 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.53000 * 109.47047 * 239.99973 * 2 1 3 5 5 N 1.46902 * 109.46741 * 120.00193 * 2 1 3 6 6 C 1.46898 * 111.00163 * 60.00131 * 5 2 1 7 7 C 1.52997 * 109.47080 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99852 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00061 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47126 * 90.00041 * 18 16 14 20 20 H 1.48500 * 109.47187 * 209.99810 * 18 16 14 21 21 H 1.48499 * 109.47129 * 329.99807 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.09007 * 109.46814 * 300.00195 * 1 2 3 25 25 H 1.08997 * 109.46775 * 59.99709 * 1 2 3 26 26 H 1.08995 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47387 * 299.99916 * 3 2 1 29 29 H 1.09000 * 109.47145 * 59.99750 * 3 2 1 30 30 H 1.09000 * 109.47352 * 300.00227 * 4 2 1 31 31 H 1.08997 * 109.47073 * 60.00501 * 4 2 1 32 32 H 1.08996 * 109.47091 * 180.02562 * 4 2 1 33 33 H 1.00898 * 111.00126 * 296.03893 * 5 2 1 34 34 H 1.08998 * 109.47488 * 59.99460 * 6 5 2 35 35 H 1.09004 * 109.46695 * 299.99191 * 6 5 2 36 36 H 1.08998 * 109.47350 * 59.99438 * 7 6 5 37 37 H 1.09003 * 109.47457 * 299.99450 * 7 6 5 38 38 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 39 39 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 40 40 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 41 41 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 42 42 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 43 43 H 0.97003 * 119.99843 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 45 45 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 46 46 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 47 47 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6926 1.1995 6 6 1.5486 -2.0836 1.2333 7 6 2.0781 -2.7707 2.4936 8 6 1.5944 -4.1976 2.5287 9 8 0.8954 -4.6231 1.6336 10 7 1.9394 -5.0011 3.5543 11 6 1.4761 -6.3945 3.6022 12 6 0.7824 -6.6407 4.9457 13 6 1.7318 -6.2576 6.0832 14 6 1.0650 -6.5302 7.4070 15 1 0.0644 -6.9355 7.4343 16 6 1.7325 -6.2621 8.5832 17 7 1.1505 -6.4995 9.7384 18 14 3.4636 -5.5616 8.5360 19 1 3.3972 -4.0781 8.5256 20 1 4.2140 -6.0151 9.7345 21 1 4.1558 -6.0347 7.3103 22 6 2.0766 -4.7699 5.9831 23 6 2.7854 -4.5027 4.6511 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.7503 -0.1990 2.0372 34 1 1.9120 -2.6119 0.3519 35 1 0.4587 -2.0979 1.2420 36 1 1.7151 -2.2426 3.3752 37 1 3.1680 -2.7564 2.4847 38 1 2.3284 -7.0667 3.5025 39 1 0.7724 -6.5738 2.7894 40 1 -0.1207 -6.0333 5.0055 41 1 0.5182 -7.6947 5.0310 42 1 2.6451 -6.8479 6.0083 43 1 1.6200 -6.3105 10.5659 44 1 1.1613 -4.1802 6.0331 45 1 2.7341 -4.4926 6.8070 46 1 2.9449 -3.4313 4.5304 47 1 3.7454 -5.0187 4.6378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935318321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:06 Heat of formation + Delta-G solvation = -69.553025 kcal Electronic energy + Delta-G solvation = -23031.016370 eV Core-core repulsion = 19826.166209 eV Total energy + Delta-G solvation = -3204.850161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22643 -39.35449 -38.49429 -35.31297 -34.33903 -33.34989 -32.11810 -29.92813 -28.38418 -28.20146 -28.05140 -24.99394 -24.16632 -23.37950 -21.37669 -20.28532 -19.69201 -18.86896 -18.14616 -17.08610 -16.88714 -16.63403 -16.23449 -15.88505 -15.29518 -15.21257 -14.98968 -14.90956 -14.65051 -14.28272 -14.11774 -13.90751 -13.67190 -13.51902 -13.20496 -12.93668 -12.83798 -12.74418 -12.61694 -12.38898 -12.28855 -12.11198 -12.05172 -11.83201 -11.77197 -11.54914 -11.49088 -11.19129 -11.01944 -10.76128 -10.62448 -9.58770 -9.36465 -8.27493 -6.32967 1.33255 1.41163 1.51619 1.63316 2.02318 2.36065 3.07417 3.11671 3.70047 3.88519 3.95122 4.02563 4.08445 4.12324 4.20599 4.24330 4.28504 4.33080 4.45531 4.53139 4.64809 4.66512 4.72909 4.76607 4.82580 4.83713 4.89562 4.94197 4.97281 5.00435 5.04243 5.05016 5.09742 5.13424 5.24753 5.37005 5.39699 5.45262 5.58312 5.68007 5.75182 6.08602 6.31929 6.45639 6.52043 6.74301 7.16918 7.32772 8.89756 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.003509 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.387766 B = 7978.037934 C = 8485.338998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.101 3.899 3 C -0.133 4.133 4 C -0.140 4.140 5 N -0.678 5.678 6 C 0.079 3.921 7 C -0.130 4.130 8 C 0.512 3.488 9 O -0.589 6.589 10 N -0.606 5.606 11 C 0.116 3.884 12 C -0.106 4.106 13 C 0.014 3.986 14 C -0.522 4.522 15 H 0.024 0.976 16 C 0.004 3.996 17 N -0.956 5.956 18 Si 0.954 3.046 19 H -0.257 1.257 20 H -0.305 1.305 21 H -0.234 1.234 22 C -0.133 4.133 23 C 0.108 3.892 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.346 0.654 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.114 0.886 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 15.264 -19.335 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.011 3.989 3 C -0.191 4.191 4 C -0.198 4.198 5 N -0.309 5.309 6 C -0.051 4.051 7 C -0.170 4.170 8 C 0.302 3.698 9 O -0.471 6.471 10 N -0.338 5.338 11 C -0.007 4.007 12 C -0.144 4.144 13 C -0.005 4.005 14 C -0.560 4.560 15 H 0.042 0.958 16 C -0.192 4.192 17 N -0.596 5.596 18 Si 0.779 3.221 19 H -0.183 1.183 20 H -0.233 1.233 21 H -0.158 1.158 22 C -0.171 4.171 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.132 0.868 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.592 14.887 -19.917 25.725 hybrid contribution -0.990 -0.239 1.204 1.578 sum 5.602 14.647 -18.713 24.415 Atomic orbital electron populations 1.22548 0.97172 1.01514 1.02774 1.21018 0.92176 0.94985 0.90760 1.21780 1.01730 0.93200 1.02389 1.21889 1.01646 0.99712 0.96534 1.60667 1.63151 1.01789 1.05319 1.21558 0.97056 0.89352 0.97118 1.21623 1.04456 0.90190 1.00752 1.21175 0.79173 0.88902 0.80564 1.90642 1.40357 1.77308 1.38777 1.48299 1.50799 1.12234 1.22513 1.21585 0.99438 0.82168 0.97503 1.21694 0.98135 1.00762 0.93853 1.19095 0.95591 0.93081 0.92744 1.21388 1.01325 1.42065 0.91234 0.95777 1.26046 1.02872 0.95616 0.94673 1.70085 1.40263 1.50811 0.98462 0.85776 0.79067 0.79274 0.77966 1.18268 1.23302 1.15757 1.22228 0.99987 0.98822 0.96111 1.22038 0.93200 1.01576 0.84617 0.92386 0.91178 0.93734 0.91924 0.91223 0.92272 0.93803 0.91245 0.92011 0.83502 0.91327 0.95613 0.87350 0.86121 0.90319 0.90271 0.94187 0.91857 0.94943 0.92649 0.92765 0.92753 0.86807 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.23 71.98 0.59 -2.24 16 2 C 0.10 1.54 0.97 3.53 0.00 1.54 16 3 C -0.13 -1.58 8.73 71.98 0.63 -0.95 16 4 C -0.14 -2.21 8.24 71.98 0.59 -1.62 16 5 N -0.68 -11.26 6.09 -470.18 -2.86 -14.12 16 6 C 0.08 1.65 4.19 86.30 0.36 2.02 16 7 C -0.13 -2.66 4.32 29.85 0.13 -2.53 16 8 C 0.51 14.94 7.70 87.66 0.68 15.62 16 9 O -0.59 -21.36 15.39 -3.04 -0.05 -21.40 16 10 N -0.61 -18.05 2.98 -818.12 -2.44 -20.49 16 11 C 0.12 3.74 6.42 86.36 0.55 4.29 16 12 C -0.11 -4.12 5.30 30.67 0.16 -3.95 16 13 C 0.01 0.60 1.66 -11.51 -0.02 0.58 16 14 C -0.52 -29.16 9.14 25.60 0.23 -28.93 16 15 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 16 C 0.00 0.24 5.45 84.65 0.46 0.70 16 17 N -0.96 -59.40 13.96 21.45 0.30 -59.10 16 18 Si 0.95 41.99 24.38 68.60 1.67 43.67 16 19 H -0.26 -10.42 6.86 99.48 0.68 -9.73 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.23 -9.11 6.53 99.48 0.65 -8.46 16 22 C -0.13 -4.90 4.85 30.68 0.15 -4.75 16 23 C 0.11 2.89 6.35 86.32 0.55 3.44 16 24 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 0.86 6.40 -2.39 -0.02 0.84 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.82 6.40 -2.39 -0.02 0.81 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.35 4.98 8.72 -89.70 -0.78 4.20 16 34 H 0.07 1.64 6.26 -2.39 -0.01 1.63 16 35 H 0.03 0.63 6.26 -2.39 -0.01 0.61 16 36 H 0.11 1.89 7.70 -2.39 -0.02 1.87 16 37 H 0.12 2.01 7.95 -2.39 -0.02 2.00 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.08 2.64 7.00 -2.39 -0.02 2.62 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 2.05 3.24 -2.39 -0.01 2.04 16 46 H 0.11 2.24 5.97 -2.39 -0.01 2.23 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -68.85 351.96 1.77 -67.08 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.08 Total: 21.16 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 5.07 Total: -16.80 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -5.00 Total: -93.72 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.67 Total: 43.67 kcal Total: -68.85 1.77 -67.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935318321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.468 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds