Wall clock time and date at job start Tue Mar 31 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99979 * 2 1 4 4 O 1.21276 * 120.00064 * 174.15706 * 3 2 1 5 5 C 1.50701 * 119.99741 * 353.87941 * 3 2 1 6 6 C 1.53000 * 109.46840 * 175.93905 * 5 3 2 7 7 C 1.52992 * 109.47198 * 295.93876 * 5 3 2 8 8 C 1.53000 * 109.46935 * 55.94272 * 5 3 2 9 9 C 1.46505 * 119.99968 * 179.97438 * 2 1 3 10 10 C 1.52991 * 109.46930 * 64.65708 * 9 2 1 11 11 C 1.53001 * 109.47078 * 299.99677 * 10 9 2 12 12 C 1.52997 * 109.47425 * 300.00337 * 11 10 9 13 13 N 1.46504 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.36932 * 119.99804 * 84.99994 * 13 12 11 15 15 H 1.08002 * 120.00615 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99656 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00104 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47236 * 89.99874 * 18 16 14 20 20 H 1.48503 * 109.47028 * 209.99740 * 18 16 14 21 21 H 1.48501 * 109.47325 * 330.00065 * 18 16 14 22 22 C 1.52999 * 109.47102 * 59.99626 * 12 11 10 23 23 C 1.52997 * 109.47574 * 300.00284 * 22 12 11 24 24 H 1.08999 * 109.46617 * 52.63562 * 1 2 3 25 25 H 1.08998 * 109.46850 * 172.63148 * 1 2 3 26 26 H 1.09000 * 109.47421 * 292.63450 * 1 2 3 27 27 H 1.08998 * 109.47268 * 59.99906 * 6 5 3 28 28 H 1.09001 * 109.47261 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47030 * 300.00086 * 6 5 3 30 30 H 1.08995 * 109.47349 * 70.08369 * 7 5 3 31 31 H 1.09000 * 109.46943 * 190.08291 * 7 5 3 32 32 H 1.09004 * 109.47690 * 310.07941 * 7 5 3 33 33 H 1.08996 * 109.47717 * 39.34168 * 8 5 3 34 34 H 1.09002 * 109.46803 * 159.34381 * 8 5 3 35 35 H 1.09000 * 109.46884 * 279.33865 * 8 5 3 36 36 H 1.09002 * 109.46941 * 184.66124 * 9 2 1 37 37 H 1.08996 * 109.47694 * 60.00036 * 10 9 2 38 38 H 1.09007 * 109.47186 * 180.02562 * 10 9 2 39 39 H 1.09005 * 109.46730 * 180.02562 * 11 10 9 40 40 H 1.08994 * 109.46984 * 60.00759 * 11 10 9 41 41 H 1.09005 * 109.46941 * 300.00238 * 12 11 10 42 42 H 0.96996 * 119.99615 * 264.99611 * 13 12 11 43 43 H 0.97005 * 120.00085 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.47049 * 179.97438 * 22 12 11 45 45 H 1.09005 * 109.46724 * 60.00478 * 22 12 11 46 46 H 1.08997 * 109.46737 * 300.00215 * 23 22 12 47 47 H 1.09000 * 109.47382 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3469 1.1700 0.1069 5 6 1.3918 2.4686 -0.1392 6 6 2.3721 3.6359 -0.0080 7 6 0.7139 2.5234 -1.5096 8 6 0.3310 2.5676 0.9590 9 6 2.1975 -1.2688 0.0006 10 6 1.9178 -2.0197 -1.3027 11 6 0.4177 -2.2970 -1.4196 12 6 -0.0377 -3.1482 -0.2327 13 7 -1.4740 -3.4142 -0.3451 14 6 -1.9185 -4.4657 -1.1012 15 1 -1.2103 -5.0988 -1.6151 16 6 -3.2794 -4.7174 -1.2081 17 7 -4.1426 -3.9456 -0.5822 18 14 -3.8858 -6.1515 -2.2401 19 1 -3.9801 -7.3668 -1.3920 20 1 -5.2252 -5.8302 -2.7954 21 1 -2.9344 -6.3975 -3.3534 22 6 0.2421 -2.3973 1.0706 23 6 1.7421 -2.1200 1.1876 24 1 -0.3632 0.6237 -0.8168 25 1 -0.3633 -1.0192 -0.1318 26 1 -0.3634 0.3955 0.9485 27 1 3.1278 3.5654 -0.7902 28 1 1.8317 4.5772 -0.1082 29 1 2.8551 3.5968 0.9684 30 1 -0.1071 1.8071 -1.5378 31 1 0.3264 3.5273 -1.6833 32 1 1.4395 2.2751 -2.2842 33 1 0.7345 2.1714 1.8908 34 1 0.0498 3.6113 1.0994 35 1 -0.5471 1.9906 0.6689 36 1 3.2662 -1.0712 0.0840 37 1 2.2422 -1.4133 -2.1483 38 1 2.4624 -2.9639 -1.3021 39 1 0.2185 -2.8324 -2.3480 40 1 -0.1273 -1.3530 -1.4201 41 1 0.5073 -4.0922 -0.2323 42 1 -2.1101 -2.8454 0.1162 43 1 -5.0936 -4.1217 -0.6566 44 1 -0.0828 -3.0035 1.9162 45 1 -0.3030 -1.4533 1.0702 46 1 2.2871 -3.0640 1.1880 47 1 1.9414 -1.5846 2.1159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964239294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:31 Heat of formation + Delta-G solvation = 17.166882 kcal Electronic energy + Delta-G solvation = -24382.578987 eV Core-core repulsion = 21181.489284 eV Total energy + Delta-G solvation = -3201.089703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03781 -38.70322 -35.86646 -34.82732 -32.92152 -31.14299 -30.46467 -28.92232 -27.54218 -27.23524 -26.15456 -23.91382 -22.64568 -22.18284 -20.44853 -19.80599 -18.66776 -17.10150 -16.53151 -15.75166 -15.49863 -15.28869 -14.73887 -14.68519 -14.19109 -13.81602 -13.53505 -13.39772 -13.13553 -12.68028 -12.49457 -12.38725 -12.27721 -12.21683 -12.08864 -11.88591 -11.82668 -11.46572 -11.43742 -11.04463 -10.98828 -10.90218 -10.74639 -10.62322 -10.29271 -10.16678 -9.91456 -9.67623 -9.50544 -9.02255 -8.83535 -8.35678 -6.99573 -5.80226 -3.08833 2.72339 3.13012 3.41185 3.47076 3.48030 4.37086 4.55713 4.67132 4.76505 4.98648 5.08263 5.13644 5.18677 5.27841 5.43171 5.44090 5.47503 5.49813 5.57163 5.63171 5.67598 5.70979 5.76493 5.79361 5.82308 5.84841 5.88188 5.99799 6.00493 6.06434 6.08893 6.12807 6.26653 6.30658 6.34486 6.49751 6.53100 6.69606 6.78707 6.95995 7.08941 7.55060 7.68085 8.29265 8.38523 9.49886 10.06424 10.41183 11.42377 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.004364 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.286525 B = 6414.516706 C = 6828.753271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.593 5.593 3 C 0.522 3.478 4 O -0.551 6.551 5 C -0.084 4.084 6 C -0.124 4.124 7 C -0.150 4.150 8 C -0.154 4.154 9 C 0.139 3.861 10 C -0.124 4.124 11 C -0.161 4.161 12 C 0.175 3.825 13 N -0.725 5.725 14 C -0.238 4.238 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.165 4.165 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.150 0.850 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.382 0.618 43 H 0.255 0.745 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.074 12.594 1.889 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.325 5.325 3 C 0.310 3.690 4 O -0.429 6.429 5 C -0.087 4.087 6 C -0.182 4.182 7 C -0.207 4.207 8 C -0.211 4.211 9 C 0.036 3.964 10 C -0.163 4.163 11 C -0.201 4.201 12 C 0.065 3.935 13 N -0.366 5.366 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.202 4.202 23 C -0.158 4.158 24 H 0.088 0.912 25 H 0.168 0.832 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.216 0.784 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.666 12.411 1.841 16.467 hybrid contribution -0.662 -0.665 -0.457 1.044 sum 10.004 11.745 1.383 15.490 Atomic orbital electron populations 1.23973 0.80128 1.08379 1.01468 1.47735 1.06989 1.05337 1.72414 1.20612 0.87583 0.85339 0.75453 1.90637 1.14494 1.87374 1.50432 1.20730 0.96780 0.93432 0.97787 1.21652 0.98229 0.95453 1.02845 1.22099 1.01053 1.03002 0.94563 1.22237 0.98464 1.02857 0.97527 1.21113 0.96953 0.82772 0.95558 1.21867 0.98511 0.99693 0.96256 1.22808 0.93651 1.01947 1.01696 1.20235 0.86946 0.95468 0.90803 1.42433 1.00083 1.34996 1.59060 1.19231 0.90803 1.04884 1.21957 0.91237 1.24713 0.95935 0.99290 1.00887 1.69650 1.01278 1.40120 1.47135 0.86228 0.78045 0.82261 0.79884 1.21772 1.21805 1.20804 1.22656 0.95457 1.02632 0.99468 1.21768 0.97275 0.99516 0.97248 0.91184 0.83249 0.91942 0.92061 0.92237 0.92239 0.90603 0.91503 0.92299 0.92332 0.91773 0.90414 0.88847 0.92594 0.91237 0.91933 0.90399 0.93432 0.78402 0.93534 0.91820 0.88970 0.90961 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 4.85 59.85 0.29 0.30 16 2 N -0.59 -8.01 2.76 -173.93 -0.48 -8.49 16 3 C 0.52 7.42 6.34 -10.98 -0.07 7.35 16 4 O -0.55 -9.55 15.33 5.56 0.09 -9.47 16 5 C -0.08 -0.93 0.75 -155.66 -0.12 -1.05 16 6 C -0.12 -1.30 7.66 37.16 0.28 -1.01 16 7 C -0.15 -1.49 8.23 37.15 0.31 -1.19 16 8 C -0.15 -1.47 7.41 37.16 0.28 -1.20 16 9 C 0.14 1.94 3.15 -67.93 -0.21 1.73 16 10 C -0.12 -1.77 5.64 -26.73 -0.15 -1.92 16 11 C -0.16 -2.68 5.13 -26.73 -0.14 -2.82 16 12 C 0.18 3.23 2.42 -67.93 -0.16 3.07 16 13 N -0.73 -16.99 5.12 -53.42 -0.27 -17.27 16 14 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 18 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.16 -2.55 5.01 -26.73 -0.13 -2.68 16 23 C -0.12 -1.61 5.61 -26.73 -0.15 -1.76 16 24 H 0.07 0.81 4.20 -51.93 -0.22 0.60 16 25 H 0.15 2.20 1.81 -51.93 -0.09 2.10 16 26 H 0.06 0.71 5.60 -51.93 -0.29 0.42 16 27 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.76 4.74 -51.93 -0.25 0.51 16 31 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 34 H 0.06 0.52 7.96 -51.93 -0.41 0.10 16 35 H 0.08 0.71 4.93 -51.93 -0.26 0.46 16 36 H 0.09 1.39 6.91 -51.93 -0.36 1.03 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.27 4.40 -51.93 -0.23 1.04 16 41 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.38 9.43 7.80 -40.82 -0.32 9.12 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.37 3.70 -51.93 -0.19 1.17 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -30.13 338.40 -7.73 -37.86 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.64 Total: 9.94 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.23 Total: -8.11 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.03 Total: -52.20 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.13 -7.73 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964239294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.031 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds