Wall clock time and date at job start Tue Mar 31 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99979 * 2 1 4 4 O 1.21276 * 120.00064 * 174.15706 * 3 2 1 5 5 C 1.50701 * 119.99741 * 353.87941 * 3 2 1 6 6 C 1.53000 * 109.46840 * 175.93905 * 5 3 2 7 7 C 1.52992 * 109.47198 * 295.93876 * 5 3 2 8 8 C 1.53000 * 109.46935 * 55.94272 * 5 3 2 9 9 C 1.46505 * 119.99968 * 179.97438 * 2 1 3 10 10 C 1.52991 * 109.46930 * 64.65708 * 9 2 1 11 11 C 1.53001 * 109.47078 * 299.99677 * 10 9 2 12 12 C 1.52997 * 109.47425 * 300.00337 * 11 10 9 13 13 N 1.46504 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.36932 * 119.99804 * 84.99994 * 13 12 11 15 15 H 1.08002 * 120.00615 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99656 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00104 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47236 * 89.99874 * 18 16 14 20 20 H 1.48503 * 109.47028 * 209.99740 * 18 16 14 21 21 H 1.48501 * 109.47325 * 330.00065 * 18 16 14 22 22 C 1.52999 * 109.47102 * 59.99626 * 12 11 10 23 23 C 1.52997 * 109.47574 * 300.00284 * 22 12 11 24 24 H 1.08999 * 109.46617 * 52.63562 * 1 2 3 25 25 H 1.08998 * 109.46850 * 172.63148 * 1 2 3 26 26 H 1.09000 * 109.47421 * 292.63450 * 1 2 3 27 27 H 1.08998 * 109.47268 * 59.99906 * 6 5 3 28 28 H 1.09001 * 109.47261 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47030 * 300.00086 * 6 5 3 30 30 H 1.08995 * 109.47349 * 70.08369 * 7 5 3 31 31 H 1.09000 * 109.46943 * 190.08291 * 7 5 3 32 32 H 1.09004 * 109.47690 * 310.07941 * 7 5 3 33 33 H 1.08996 * 109.47717 * 39.34168 * 8 5 3 34 34 H 1.09002 * 109.46803 * 159.34381 * 8 5 3 35 35 H 1.09000 * 109.46884 * 279.33865 * 8 5 3 36 36 H 1.09002 * 109.46941 * 184.66124 * 9 2 1 37 37 H 1.08996 * 109.47694 * 60.00036 * 10 9 2 38 38 H 1.09007 * 109.47186 * 180.02562 * 10 9 2 39 39 H 1.09005 * 109.46730 * 180.02562 * 11 10 9 40 40 H 1.08994 * 109.46984 * 60.00759 * 11 10 9 41 41 H 1.09005 * 109.46941 * 300.00238 * 12 11 10 42 42 H 0.96996 * 119.99615 * 264.99611 * 13 12 11 43 43 H 0.97005 * 120.00085 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.47049 * 179.97438 * 22 12 11 45 45 H 1.09005 * 109.46724 * 60.00478 * 22 12 11 46 46 H 1.08997 * 109.46737 * 300.00215 * 23 22 12 47 47 H 1.09000 * 109.47382 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3469 1.1700 0.1069 5 6 1.3918 2.4686 -0.1392 6 6 2.3721 3.6359 -0.0080 7 6 0.7139 2.5234 -1.5096 8 6 0.3310 2.5676 0.9590 9 6 2.1975 -1.2688 0.0006 10 6 1.9178 -2.0197 -1.3027 11 6 0.4177 -2.2970 -1.4196 12 6 -0.0377 -3.1482 -0.2327 13 7 -1.4740 -3.4142 -0.3451 14 6 -1.9185 -4.4657 -1.1012 15 1 -1.2103 -5.0988 -1.6151 16 6 -3.2794 -4.7174 -1.2081 17 7 -4.1426 -3.9456 -0.5822 18 14 -3.8858 -6.1515 -2.2401 19 1 -3.9801 -7.3668 -1.3920 20 1 -5.2252 -5.8302 -2.7954 21 1 -2.9344 -6.3975 -3.3534 22 6 0.2421 -2.3973 1.0706 23 6 1.7421 -2.1200 1.1876 24 1 -0.3632 0.6237 -0.8168 25 1 -0.3633 -1.0192 -0.1318 26 1 -0.3634 0.3955 0.9485 27 1 3.1278 3.5654 -0.7902 28 1 1.8317 4.5772 -0.1082 29 1 2.8551 3.5968 0.9684 30 1 -0.1071 1.8071 -1.5378 31 1 0.3264 3.5273 -1.6833 32 1 1.4395 2.2751 -2.2842 33 1 0.7345 2.1714 1.8908 34 1 0.0498 3.6113 1.0994 35 1 -0.5471 1.9906 0.6689 36 1 3.2662 -1.0712 0.0840 37 1 2.2422 -1.4133 -2.1483 38 1 2.4624 -2.9639 -1.3021 39 1 0.2185 -2.8324 -2.3480 40 1 -0.1273 -1.3530 -1.4201 41 1 0.5073 -4.0922 -0.2323 42 1 -2.1101 -2.8454 0.1162 43 1 -5.0936 -4.1217 -0.6566 44 1 -0.0828 -3.0035 1.9162 45 1 -0.3030 -1.4533 1.0702 46 1 2.2871 -3.0640 1.1880 47 1 1.9414 -1.5846 2.1159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964239294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:31 Heat of formation + Delta-G solvation = -0.604253 kcal Electronic energy + Delta-G solvation = -24383.349601 eV Core-core repulsion = 21181.489284 eV Total energy + Delta-G solvation = -3201.860317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16962 -39.91630 -36.85950 -36.40859 -34.43173 -32.72590 -31.73718 -30.41252 -28.30930 -28.13277 -27.40573 -25.62401 -23.91548 -23.46382 -21.70245 -21.06604 -19.77762 -19.03329 -17.58207 -16.97981 -16.79682 -16.50208 -16.18054 -15.69293 -15.59467 -15.09654 -15.01988 -14.68570 -14.40693 -13.84773 -13.70821 -13.57037 -13.25318 -13.14840 -13.09827 -13.03696 -13.02175 -12.83122 -12.81464 -12.57833 -12.33290 -12.13684 -11.94129 -11.89721 -11.85024 -11.68786 -11.38654 -11.19009 -10.86463 -10.72816 -10.11500 -9.47696 -8.94988 -7.90594 -5.17422 1.49504 1.49998 1.57907 1.63833 2.06864 2.58781 3.42592 3.43164 3.73564 3.84877 3.86973 3.90798 3.96951 4.23279 4.25732 4.29838 4.35608 4.37699 4.45951 4.60737 4.63791 4.65892 4.71002 4.74614 4.82016 4.83234 4.88375 4.97423 4.99407 5.00278 5.05197 5.12720 5.15425 5.23456 5.26651 5.35098 5.35658 5.43410 5.50453 5.57952 5.64794 5.72280 6.32505 6.46708 7.19708 7.39440 8.15139 8.39207 9.32467 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.004364 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.286525 B = 6414.516706 C = 6828.753271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.591 5.591 3 C 0.516 3.484 4 O -0.587 6.587 5 C -0.082 4.082 6 C -0.122 4.122 7 C -0.147 4.147 8 C -0.151 4.151 9 C 0.140 3.860 10 C -0.115 4.115 11 C -0.150 4.150 12 C 0.174 3.826 13 N -0.734 5.734 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.070 4.070 17 N -0.965 5.965 18 Si 0.963 3.037 19 H -0.291 1.291 20 H -0.296 1.296 21 H -0.273 1.273 22 C -0.155 4.155 23 C -0.110 4.110 24 H 0.084 0.916 25 H 0.130 0.870 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 13.597 1.822 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.322 5.322 3 C 0.305 3.695 4 O -0.468 6.468 5 C -0.085 4.085 6 C -0.179 4.179 7 C -0.204 4.204 8 C -0.208 4.208 9 C 0.037 3.963 10 C -0.154 4.154 11 C -0.189 4.189 12 C 0.066 3.934 13 N -0.374 5.374 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.262 4.262 17 N -0.616 5.616 18 Si 0.793 3.207 19 H -0.218 1.218 20 H -0.223 1.223 21 H -0.198 1.198 22 C -0.192 4.192 23 C -0.149 4.149 24 H 0.102 0.898 25 H 0.147 0.853 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.961 13.408 1.767 17.409 hybrid contribution -0.665 -0.959 -0.427 1.243 sum 10.296 12.449 1.340 16.211 Atomic orbital electron populations 1.23955 0.79457 1.07432 1.03019 1.47784 1.07302 1.05147 1.71975 1.21247 0.87353 0.86370 0.74511 1.90618 1.16143 1.87922 1.52145 1.20791 0.97038 0.91675 0.99028 1.21651 0.98066 0.96473 1.01752 1.22091 1.00563 1.04368 0.93406 1.22230 0.97865 1.04315 0.96430 1.21050 0.96792 0.83093 0.95343 1.21780 0.96607 1.00281 0.96713 1.22625 0.95450 1.01452 0.99422 1.20390 0.84170 0.95688 0.93136 1.42576 1.02026 1.34208 1.58555 1.19545 0.90913 1.05116 1.21164 0.91217 1.25393 0.96305 1.01849 1.02692 1.69781 1.01083 1.41821 1.48954 0.85291 0.77248 0.79480 0.78651 1.21803 1.22289 1.19838 1.22559 0.97027 1.02473 0.97166 1.21701 0.95689 1.00023 0.97489 0.89816 0.85259 0.90290 0.93399 0.89606 0.93262 0.90621 0.89264 0.93375 0.93133 0.89732 0.89946 0.89405 0.92280 0.90422 0.94247 0.89790 0.94650 0.79294 0.94118 0.92741 0.87970 0.90103 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 4.85 127.77 0.62 0.65 16 2 N -0.59 -15.06 2.76 -822.58 -2.27 -17.34 16 3 C 0.52 13.98 6.34 87.66 0.56 14.54 16 4 O -0.59 -20.04 15.33 -3.02 -0.05 -20.09 16 5 C -0.08 -1.65 0.75 -52.93 -0.04 -1.69 16 6 C -0.12 -2.32 7.66 71.98 0.55 -1.77 16 7 C -0.15 -2.57 8.23 71.98 0.59 -1.98 16 8 C -0.15 -2.48 7.41 71.98 0.53 -1.95 16 9 C 0.14 3.73 3.15 44.99 0.14 3.87 16 10 C -0.11 -3.14 5.64 30.59 0.17 -2.97 16 11 C -0.15 -4.90 5.13 30.59 0.16 -4.74 16 12 C 0.17 6.36 2.42 44.99 0.11 6.47 16 13 N -0.73 -34.46 5.12 -322.94 -1.65 -36.11 16 14 C -0.24 -12.55 9.93 84.03 0.83 -11.72 16 15 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 16 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 17 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 18 Si 0.96 45.12 29.55 68.60 2.03 47.15 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.15 -4.63 5.01 30.59 0.15 -4.47 16 23 C -0.11 -2.81 5.61 30.59 0.17 -2.64 16 24 H 0.08 1.76 4.20 -2.39 -0.01 1.75 16 25 H 0.13 3.63 1.81 -2.39 0.00 3.62 16 26 H 0.08 1.61 5.60 -2.39 -0.01 1.60 16 27 H 0.05 1.03 8.05 -2.39 -0.02 1.01 16 28 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.32 4.74 -2.39 -0.01 1.30 16 31 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 32 H 0.05 0.94 8.11 -2.39 -0.02 0.92 16 33 H 0.05 0.92 7.97 -2.39 -0.02 0.90 16 34 H 0.08 1.06 7.96 -2.39 -0.02 1.04 16 35 H 0.08 1.27 4.93 -2.39 -0.01 1.26 16 36 H 0.09 2.52 6.91 -2.39 -0.02 2.50 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.08 2.66 4.40 -2.39 -0.01 2.65 16 41 H 0.04 1.38 8.08 -2.38 -0.02 1.36 16 42 H 0.37 18.61 7.80 -92.71 -0.72 17.89 16 43 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.10 2.89 3.70 -2.38 -0.01 2.88 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.34 338.40 3.60 -60.74 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.25 Total: 33.85 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.02 Total: -11.80 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.64 Total: -109.84 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.34 3.60 -60.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964239294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.134 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds