Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 C 1.52997 * 109.47170 * 119.99792 * 2 1 3 5 5 C 1.50700 * 109.46896 * 174.99956 * 4 2 1 6 6 O 1.21282 * 120.00655 * 353.51660 * 5 4 2 7 7 N 1.34776 * 119.99841 * 173.79850 * 5 4 2 8 8 C 1.46958 * 120.35672 * 175.69955 * 7 5 4 9 9 C 1.52336 * 109.08868 * 68.37505 * 8 7 5 10 10 C 1.53793 * 109.16262 * 72.70729 * 9 8 7 11 11 C 1.52443 * 109.41952 * 282.12558 * 10 9 8 12 12 C 1.53967 * 110.73329 * 113.73480 * 11 10 9 13 13 C 1.52880 * 109.71235 * 315.64379 * 12 11 10 14 14 H 1.09001 * 109.48354 * 47.10657 * 13 12 11 15 15 N 1.46501 * 109.47902 * 167.12630 * 13 12 11 16 16 C 1.36946 * 119.99774 * 205.00223 * 15 13 12 17 17 H 1.07994 * 120.00150 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99837 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00103 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99996 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47099 * 89.99932 * 20 18 16 22 22 H 1.48497 * 109.47186 * 209.99910 * 20 18 16 23 23 H 1.48497 * 109.47386 * 329.99863 * 20 18 16 24 24 C 1.45345 * 120.35205 * 355.41872 * 7 5 4 25 25 H 1.08997 * 109.47117 * 300.00009 * 1 2 3 26 26 H 1.09003 * 109.47395 * 59.99901 * 1 2 3 27 27 H 1.09000 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47489 * 240.00240 * 2 1 3 29 29 H 1.09003 * 109.47007 * 300.00337 * 3 2 1 30 30 H 1.09005 * 109.47365 * 60.00019 * 3 2 1 31 31 H 1.08993 * 109.47488 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46802 * 55.00188 * 4 2 1 33 33 H 1.08993 * 109.47512 * 295.00080 * 4 2 1 34 34 H 1.09005 * 109.53612 * 188.26151 * 8 7 5 35 35 H 1.09001 * 109.53078 * 308.41261 * 8 7 5 36 36 H 1.09006 * 109.52027 * 192.61311 * 9 8 7 37 37 H 1.09002 * 109.52509 * 312.73312 * 9 8 7 38 38 H 1.08998 * 109.48198 * 42.11117 * 10 9 8 39 39 H 1.09005 * 109.48146 * 162.13610 * 10 9 8 40 40 H 1.09000 * 109.22749 * 234.05422 * 11 10 9 41 41 H 1.09004 * 109.22793 * 353.45014 * 11 10 9 42 42 H 1.08993 * 109.43345 * 75.71996 * 12 11 10 43 43 H 1.09008 * 109.43075 * 195.57659 * 12 11 10 44 44 H 0.96999 * 120.00367 * 25.00075 * 15 13 12 45 45 H 0.96995 * 119.99585 * 179.97438 * 19 18 16 46 46 H 1.08990 * 109.67543 * 343.07841 * 24 7 5 47 47 H 1.08998 * 109.67442 * 103.62308 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1888 6 8 4.1353 -0.4816 0.1899 7 7 4.2252 -1.3178 2.2428 8 6 5.6791 -1.5149 2.1585 9 6 6.3625 -0.1556 2.0819 10 6 6.2891 0.5248 3.4591 11 6 4.8941 1.1045 3.6643 12 6 4.1602 0.3696 4.8009 13 6 4.3644 -1.1386 4.6562 14 1 5.4191 -1.3471 4.4766 15 7 3.9363 -1.8098 5.8860 16 6 4.4630 -3.0291 6.2195 17 1 5.1942 -3.4957 5.5762 18 6 4.0577 -3.6649 7.3850 19 7 4.5635 -4.8370 7.7054 20 14 2.7934 -2.8574 8.4982 21 1 1.4305 -3.2810 8.0880 22 1 3.0374 -3.2685 9.9041 23 1 2.9073 -1.3810 8.3874 24 6 3.5330 -1.6494 3.4771 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6053 -1.7197 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 6.0265 -2.0482 3.0434 35 1 5.9171 -2.0947 1.2667 36 1 7.4061 -0.2883 1.7963 37 1 5.8582 0.4645 1.3408 38 1 6.4961 -0.2087 4.2384 39 1 7.0266 1.3259 3.5087 40 1 4.9782 2.1616 3.9160 41 1 4.3226 0.9996 2.7421 42 1 4.5571 0.6987 5.7612 43 1 3.0954 0.5976 4.7520 44 1 3.2798 -1.3906 6.4641 45 1 4.2806 -5.2810 8.5200 46 1 2.5523 -1.1741 3.4869 47 1 3.4183 -2.7306 3.5543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088251785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = -35.183017 kcal Electronic energy + Delta-G solvation = -24320.748029 eV Core-core repulsion = 21117.388264 eV Total energy + Delta-G solvation = -3203.359765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44497 -37.93221 -35.64755 -34.62893 -34.05709 -32.29048 -30.57873 -28.61020 -27.15830 -26.92741 -26.04225 -23.66174 -22.41502 -21.44216 -20.37394 -19.57537 -18.41750 -17.66542 -16.86351 -16.02675 -15.82343 -15.08175 -14.91068 -14.26857 -14.06286 -13.94351 -13.83117 -13.57960 -13.15430 -12.85575 -12.67447 -12.54397 -12.36003 -12.24143 -11.96123 -11.73597 -11.51328 -11.48267 -11.11248 -10.97647 -10.90962 -10.82760 -10.71554 -10.63686 -10.43260 -10.31362 -10.30524 -9.81756 -9.67192 -9.43247 -8.99732 -8.21894 -7.36301 -5.85617 -3.22687 2.87010 3.27981 3.32342 3.34201 3.40603 4.51194 4.65714 4.75860 4.87127 4.95441 5.00853 5.11338 5.25411 5.32544 5.33630 5.41025 5.47047 5.54444 5.58445 5.61833 5.64132 5.68437 5.74714 5.82751 5.83590 5.86911 5.93235 5.94964 6.05326 6.08277 6.17962 6.22768 6.25842 6.31053 6.33003 6.36860 6.49763 6.58337 6.60790 6.76041 6.93825 7.74802 7.89167 8.32993 8.44524 9.10793 9.83252 10.02095 11.32260 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.005317 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.007050 B = 5264.519547 C = 5932.352585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.139 4.139 5 C 0.513 3.487 6 O -0.550 6.550 7 N -0.598 5.598 8 C 0.115 3.885 9 C -0.136 4.136 10 C -0.127 4.127 11 C -0.113 4.113 12 C -0.127 4.127 13 C 0.159 3.841 14 H 0.077 0.923 15 N -0.744 5.744 16 C -0.249 4.249 17 H 0.090 0.910 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.081 3.919 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 11.730 -12.350 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.179 4.179 5 C 0.302 3.698 6 O -0.429 6.429 7 N -0.330 5.330 8 C -0.007 4.007 9 C -0.174 4.174 10 C -0.165 4.165 11 C -0.151 4.151 12 C -0.165 4.165 13 C 0.049 3.951 14 H 0.094 0.906 15 N -0.387 5.387 16 C -0.379 4.379 17 H 0.108 0.892 18 C -0.187 4.187 19 N -0.578 5.578 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.044 4.044 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.503 11.665 -12.821 17.684 hybrid contribution -1.047 0.333 1.120 1.569 sum -4.550 11.998 -11.701 17.365 Atomic orbital electron populations 1.21863 0.95208 1.01704 1.01749 1.20853 0.94835 0.96721 0.97484 1.21904 1.02768 0.95207 1.00815 1.21830 0.92791 1.02892 1.00373 1.20572 0.89851 0.76884 0.82512 1.90615 1.70959 1.49352 1.31935 1.47890 1.08106 1.63395 1.13640 1.21501 0.79538 0.97148 1.02502 1.22036 1.00312 0.97372 0.97700 1.21837 0.96745 1.00284 0.97608 1.21645 0.96172 0.98445 0.98856 1.22080 0.99748 0.96037 0.98661 1.20836 0.98197 0.90039 0.85979 0.90570 1.42772 1.51090 1.22074 1.22721 1.19038 1.19832 0.93399 1.05601 0.89183 1.24669 0.99612 0.96496 0.97967 1.69698 1.46405 1.15411 1.26243 0.86577 0.82174 0.78973 0.80944 1.21045 1.21725 1.20267 1.22581 0.96558 1.01606 0.83702 0.92691 0.92618 0.92691 0.90466 0.93168 0.93409 0.91106 0.88978 0.89193 0.89215 0.91674 0.91660 0.90457 0.90448 0.92655 0.93031 0.92056 0.91689 0.92649 0.80529 0.92956 0.90996 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.08 -0.88 2.57 -90.62 -0.23 -1.11 16 3 C -0.15 -1.67 8.94 37.16 0.33 -1.33 16 4 C -0.14 -1.64 3.89 -27.88 -0.11 -1.75 16 5 C 0.51 7.40 5.81 -10.99 -0.06 7.34 16 6 O -0.55 -9.12 12.83 5.56 0.07 -9.05 16 7 N -0.60 -8.69 1.69 -174.60 -0.30 -8.98 16 8 C 0.12 1.65 5.20 -4.13 -0.02 1.63 16 9 C -0.14 -1.79 5.54 -26.66 -0.15 -1.94 16 10 C -0.13 -1.67 5.49 -26.60 -0.15 -1.82 16 11 C -0.11 -1.49 5.40 -26.51 -0.14 -1.64 16 12 C -0.13 -1.87 5.21 -26.29 -0.14 -2.01 16 13 C 0.16 2.75 2.29 -67.96 -0.16 2.59 16 14 H 0.08 1.38 3.29 -51.93 -0.17 1.20 16 15 N -0.74 -16.10 4.93 -53.46 -0.26 -16.36 16 16 C -0.25 -6.54 10.36 -15.06 -0.16 -6.69 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 20 Si 0.88 21.11 27.74 -169.99 -4.71 16.39 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 24 C 0.08 1.27 5.43 -4.64 -0.03 1.24 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.94 7.86 -51.93 -0.41 0.54 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 0.99 6.98 -51.93 -0.36 0.63 16 34 H 0.09 1.34 6.07 -51.93 -0.32 1.03 16 35 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.13 6.07 -51.93 -0.31 0.82 16 38 H 0.08 1.12 5.47 -51.93 -0.28 0.84 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.85 5.38 -51.93 -0.28 0.57 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.77 7.85 -51.92 -0.41 0.36 16 44 H 0.36 7.77 5.66 -40.82 -0.23 7.54 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 1.01 5.57 -51.93 -0.29 0.72 16 47 H 0.07 1.33 8.08 -51.93 -0.42 0.92 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -29.50 343.09 -8.06 -37.56 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.05 Total: 8.94 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.76 Total: -6.32 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.22 Total: -52.69 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.50 -8.06 -37.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088251785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.377 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds