Wall clock time and date at job start Tue Mar 31 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 C 1.52997 * 109.47170 * 119.99792 * 2 1 3 5 5 C 1.50700 * 109.46896 * 174.99956 * 4 2 1 6 6 O 1.21282 * 120.00655 * 353.51660 * 5 4 2 7 7 N 1.34776 * 119.99841 * 173.79850 * 5 4 2 8 8 C 1.46958 * 120.35672 * 175.69955 * 7 5 4 9 9 C 1.52336 * 109.08868 * 68.37505 * 8 7 5 10 10 C 1.53793 * 109.16262 * 72.70729 * 9 8 7 11 11 C 1.52443 * 109.41952 * 282.12558 * 10 9 8 12 12 C 1.53967 * 110.73329 * 113.73480 * 11 10 9 13 13 C 1.52880 * 109.71235 * 315.64379 * 12 11 10 14 14 H 1.09001 * 109.48354 * 47.10657 * 13 12 11 15 15 N 1.46501 * 109.47902 * 167.12630 * 13 12 11 16 16 C 1.36946 * 119.99774 * 205.00223 * 15 13 12 17 17 H 1.07994 * 120.00150 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99837 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00103 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99996 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47099 * 89.99932 * 20 18 16 22 22 H 1.48497 * 109.47186 * 209.99910 * 20 18 16 23 23 H 1.48497 * 109.47386 * 329.99863 * 20 18 16 24 24 C 1.45345 * 120.35205 * 355.41872 * 7 5 4 25 25 H 1.08997 * 109.47117 * 300.00009 * 1 2 3 26 26 H 1.09003 * 109.47395 * 59.99901 * 1 2 3 27 27 H 1.09000 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47489 * 240.00240 * 2 1 3 29 29 H 1.09003 * 109.47007 * 300.00337 * 3 2 1 30 30 H 1.09005 * 109.47365 * 60.00019 * 3 2 1 31 31 H 1.08993 * 109.47488 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46802 * 55.00188 * 4 2 1 33 33 H 1.08993 * 109.47512 * 295.00080 * 4 2 1 34 34 H 1.09005 * 109.53612 * 188.26151 * 8 7 5 35 35 H 1.09001 * 109.53078 * 308.41261 * 8 7 5 36 36 H 1.09006 * 109.52027 * 192.61311 * 9 8 7 37 37 H 1.09002 * 109.52509 * 312.73312 * 9 8 7 38 38 H 1.08998 * 109.48198 * 42.11117 * 10 9 8 39 39 H 1.09005 * 109.48146 * 162.13610 * 10 9 8 40 40 H 1.09000 * 109.22749 * 234.05422 * 11 10 9 41 41 H 1.09004 * 109.22793 * 353.45014 * 11 10 9 42 42 H 1.08993 * 109.43345 * 75.71996 * 12 11 10 43 43 H 1.09008 * 109.43075 * 195.57659 * 12 11 10 44 44 H 0.96999 * 120.00367 * 25.00075 * 15 13 12 45 45 H 0.96995 * 119.99585 * 179.97438 * 19 18 16 46 46 H 1.08990 * 109.67543 * 343.07841 * 24 7 5 47 47 H 1.08998 * 109.67442 * 103.62308 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1888 6 8 4.1353 -0.4816 0.1899 7 7 4.2252 -1.3178 2.2428 8 6 5.6791 -1.5149 2.1585 9 6 6.3625 -0.1556 2.0819 10 6 6.2891 0.5248 3.4591 11 6 4.8941 1.1045 3.6643 12 6 4.1602 0.3696 4.8009 13 6 4.3644 -1.1386 4.6562 14 1 5.4191 -1.3471 4.4766 15 7 3.9363 -1.8098 5.8860 16 6 4.4630 -3.0291 6.2195 17 1 5.1942 -3.4957 5.5762 18 6 4.0577 -3.6649 7.3850 19 7 4.5635 -4.8370 7.7054 20 14 2.7934 -2.8574 8.4982 21 1 1.4305 -3.2810 8.0880 22 1 3.0374 -3.2685 9.9041 23 1 2.9073 -1.3810 8.3874 24 6 3.5330 -1.6494 3.4771 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6053 -1.7197 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 6.0265 -2.0482 3.0434 35 1 5.9171 -2.0947 1.2667 36 1 7.4061 -0.2883 1.7963 37 1 5.8582 0.4645 1.3408 38 1 6.4961 -0.2087 4.2384 39 1 7.0266 1.3259 3.5087 40 1 4.9782 2.1616 3.9160 41 1 4.3226 0.9996 2.7421 42 1 4.5571 0.6987 5.7612 43 1 3.0954 0.5976 4.7520 44 1 3.2798 -1.3906 6.4641 45 1 4.2806 -5.2810 8.5200 46 1 2.5523 -1.1741 3.4869 47 1 3.4183 -2.7306 3.5543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088251785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:49 Heat of formation + Delta-G solvation = -51.414523 kcal Electronic energy + Delta-G solvation = -24321.451880 eV Core-core repulsion = 21117.388264 eV Total energy + Delta-G solvation = -3204.063616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63882 -39.16004 -36.74018 -36.08317 -35.23384 -34.00927 -32.19130 -29.78939 -28.19784 -27.92965 -27.24063 -25.33046 -23.68470 -22.80073 -21.37729 -20.80969 -19.69627 -19.44044 -18.07895 -17.24341 -17.04023 -16.48980 -16.14341 -15.76083 -15.32606 -15.12548 -14.91791 -14.72774 -14.55510 -14.21925 -14.07050 -13.92809 -13.49259 -13.18429 -13.05820 -12.99773 -12.80556 -12.66050 -12.63120 -12.23613 -12.08843 -11.99499 -11.92017 -11.78372 -11.71411 -11.54026 -11.52187 -11.42117 -11.17130 -10.97361 -10.50071 -9.56531 -9.19163 -7.98875 -5.32976 1.41955 1.44474 1.52007 1.71880 2.11320 2.51937 3.33001 3.47662 3.71376 3.81637 3.90130 3.99480 4.04477 4.05532 4.18978 4.26817 4.33556 4.40806 4.53566 4.56408 4.65586 4.71886 4.72746 4.77000 4.78423 4.85416 4.87250 4.95485 5.03550 5.07163 5.12951 5.13794 5.19518 5.30274 5.31559 5.36016 5.41478 5.48321 5.52833 5.53881 5.71522 5.82458 6.24158 6.55985 7.11199 7.27644 7.86370 8.05542 9.22428 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.005317 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.007050 B = 5264.519547 C = 5932.352585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.512 3.488 6 O -0.571 6.571 7 N -0.597 5.597 8 C 0.113 3.887 9 C -0.126 4.126 10 C -0.125 4.125 11 C -0.106 4.106 12 C -0.119 4.119 13 C 0.154 3.846 14 H 0.066 0.934 15 N -0.745 5.745 16 C -0.225 4.225 17 H 0.057 0.943 18 C -0.061 4.061 19 N -0.985 5.985 20 Si 0.951 3.049 21 H -0.278 1.278 22 H -0.302 1.302 23 H -0.249 1.249 24 C 0.095 3.905 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.367 0.633 45 H 0.256 0.744 46 H 0.096 0.904 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 14.291 -12.638 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.177 4.177 5 C 0.302 3.698 6 O -0.452 6.452 7 N -0.329 5.329 8 C -0.010 4.010 9 C -0.165 4.165 10 C -0.163 4.163 11 C -0.144 4.144 12 C -0.158 4.158 13 C 0.046 3.954 14 H 0.084 0.916 15 N -0.388 5.388 16 C -0.356 4.356 17 H 0.075 0.925 18 C -0.253 4.253 19 N -0.635 5.635 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.230 1.230 23 H -0.173 1.173 24 C -0.031 4.031 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.200 0.800 45 H 0.065 0.935 46 H 0.114 0.886 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.305 14.284 -13.158 20.132 hybrid contribution -0.383 -0.473 1.070 1.231 sum -5.687 13.810 -12.088 19.214 Atomic orbital electron populations 1.21821 0.93311 1.02298 1.02608 1.20834 0.96313 0.96284 0.96271 1.21859 1.01135 0.95534 1.01836 1.21905 0.90471 1.03812 1.01499 1.21063 0.90977 0.75989 0.81790 1.90612 1.71719 1.50196 1.32633 1.47865 1.08097 1.63465 1.13500 1.21508 0.79888 0.97898 1.01662 1.21941 1.00733 0.96189 0.97599 1.21808 0.97433 1.00304 0.96710 1.21593 0.95675 0.99207 0.97959 1.21999 1.01094 0.93590 0.99079 1.21027 0.97842 0.91760 0.84753 0.91647 1.42726 1.51028 1.20722 1.24371 1.18964 1.17907 0.94466 1.04295 0.92521 1.25454 1.02501 0.97263 1.00047 1.69886 1.48970 1.17638 1.27009 0.85463 0.79356 0.79452 0.77816 1.20417 1.22959 1.17303 1.22270 0.97323 1.00012 0.83496 0.91800 0.91815 0.92267 0.92182 0.92263 0.92302 0.93523 0.88117 0.87681 0.90450 0.92112 0.90426 0.91467 0.92058 0.91049 0.91221 0.92422 0.92122 0.90918 0.79967 0.93499 0.88616 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.19 71.98 0.66 -1.49 16 2 C -0.08 -1.55 2.57 -10.80 -0.03 -1.58 16 3 C -0.15 -2.95 8.94 71.98 0.64 -2.31 16 4 C -0.14 -2.92 3.89 29.85 0.12 -2.80 16 5 C 0.51 14.14 5.81 87.66 0.51 14.65 16 6 O -0.57 -18.61 12.83 -3.04 -0.04 -18.65 16 7 N -0.60 -16.89 1.69 -824.71 -1.40 -18.28 16 8 C 0.11 3.24 5.20 86.07 0.45 3.69 16 9 C -0.13 -3.22 5.54 30.64 0.17 -3.05 16 10 C -0.13 -3.07 5.49 30.68 0.17 -2.91 16 11 C -0.11 -2.52 5.40 30.74 0.17 -2.36 16 12 C -0.12 -3.19 5.21 30.88 0.16 -3.03 16 13 C 0.15 5.14 2.29 44.97 0.10 5.25 16 14 H 0.07 2.37 3.29 -2.39 -0.01 2.36 16 15 N -0.75 -31.39 4.93 -323.04 -1.59 -32.98 16 16 C -0.23 -11.98 10.36 84.03 0.87 -11.11 16 17 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 18 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 19 N -0.98 -61.30 13.97 21.65 0.30 -61.00 16 20 Si 0.95 43.24 27.74 68.60 1.90 45.14 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.25 -10.02 6.52 99.48 0.65 -9.37 16 24 C 0.09 2.85 5.43 86.61 0.47 3.32 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.40 7.86 -2.39 -0.02 1.38 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.05 1.17 6.19 -2.39 -0.01 1.16 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.11 1.94 6.98 -2.39 -0.02 1.92 16 34 H 0.08 2.40 6.07 -2.38 -0.01 2.39 16 35 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.89 6.07 -2.39 -0.01 1.88 16 38 H 0.06 1.73 5.47 -2.39 -0.01 1.72 16 39 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.44 5.38 -2.39 -0.01 1.42 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.72 7.85 -2.38 -0.02 1.70 16 44 H 0.37 14.78 5.66 -92.71 -0.52 14.26 16 45 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.10 2.42 5.57 -2.39 -0.01 2.41 16 47 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 Total: -1.00 -64.66 343.09 4.47 -60.20 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.37 Total: 32.29 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.93 Total: -6.71 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -2.69 Total: -112.26 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.04 Total: -18.65 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.90 Total: 45.14 kcal Total: -64.66 4.47 -60.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088251785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.781 kcal (2) G-P(sol) polarization free energy of solvation -64.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds