Wall clock time and date at job start Tue Mar 31 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 C 1.52993 * 109.47498 * 120.00227 * 2 1 3 5 5 C 1.50697 * 109.47368 * 175.00083 * 4 2 1 6 6 O 1.21287 * 119.99658 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00337 * 180.02562 * 5 4 2 8 8 C 1.45337 * 120.36250 * 359.97438 * 7 5 4 9 9 C 1.53447 * 108.41485 * 136.67545 * 8 7 5 10 10 C 1.52874 * 109.38705 * 282.27670 * 9 8 7 11 11 C 1.53957 * 109.72850 * 72.89167 * 10 9 8 12 12 C 1.52450 * 110.72812 * 44.36697 * 11 10 9 13 13 C 1.53797 * 109.40219 * 246.26741 * 12 11 10 14 14 H 1.09000 * 109.52746 * 317.93146 * 13 12 11 15 15 N 1.46505 * 109.52052 * 197.74231 * 13 12 11 16 16 C 1.36930 * 119.99882 * 155.00033 * 15 13 12 17 17 H 1.08000 * 120.00582 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99825 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00386 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99846 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47087 * 120.00040 * 20 18 16 23 23 H 1.48508 * 109.46873 * 239.99772 * 20 18 16 24 24 C 1.46960 * 120.36508 * 179.97438 * 7 5 4 25 25 H 1.09003 * 109.47030 * 299.99671 * 1 2 3 26 26 H 1.08998 * 109.47378 * 59.99765 * 1 2 3 27 27 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46684 * 240.00707 * 2 1 3 29 29 H 1.09003 * 109.46882 * 60.00239 * 3 2 1 30 30 H 1.08994 * 109.47318 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47225 * 300.00724 * 3 2 1 32 32 H 1.09004 * 109.47155 * 54.99704 * 4 2 1 33 33 H 1.09005 * 109.46865 * 294.99781 * 4 2 1 34 34 H 1.09002 * 109.67497 * 256.40801 * 8 7 5 35 35 H 1.09000 * 109.67564 * 16.90783 * 8 7 5 36 36 H 1.08998 * 109.48126 * 162.29830 * 9 8 7 37 37 H 1.09000 * 109.48216 * 42.25426 * 9 8 7 38 38 H 1.09000 * 109.42579 * 312.81449 * 10 9 8 39 39 H 1.08994 * 109.42741 * 192.97069 * 10 9 8 40 40 H 1.09000 * 109.22118 * 164.68883 * 11 10 9 41 41 H 1.08993 * 109.22736 * 284.08233 * 11 10 9 42 42 H 1.08999 * 109.48249 * 6.24686 * 12 11 10 43 43 H 1.08998 * 109.48060 * 126.28651 * 12 11 10 44 44 H 0.96997 * 119.99775 * 334.99725 * 15 13 12 45 45 H 0.97001 * 120.00628 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.53134 * 171.72952 * 24 7 5 47 47 H 1.08996 * 109.53771 * 51.50085 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5420 -0.8294 1.1887 6 8 4.1450 -0.3747 0.2397 7 7 4.2150 -1.4322 2.1888 8 6 3.5003 -1.9802 3.3295 9 6 4.0976 -3.3542 3.6611 10 6 3.5711 -4.3897 2.6673 11 6 4.2342 -4.1764 1.2943 12 6 5.7322 -3.9394 1.4495 13 6 6.0691 -2.5014 1.0206 14 1 5.5144 -2.2515 0.1162 15 7 7.5067 -2.3922 0.7606 16 6 7.9773 -1.4282 -0.0905 17 1 7.2886 -0.7487 -0.5705 18 6 9.3394 -1.3251 -0.3373 19 7 10.1786 -2.1542 0.2463 20 14 9.9814 -0.0096 -1.4979 21 1 8.8429 0.7877 -2.0206 22 1 10.9164 0.8823 -0.7663 23 1 10.6952 -0.6536 -2.6298 24 6 5.6796 -1.5425 2.1378 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9565 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.6113 -1.3153 4.1861 35 1 2.4440 -2.0884 3.0833 36 1 3.8095 -3.6414 4.6723 37 1 5.1843 -3.3043 3.5928 38 1 2.4910 -4.2814 2.5690 39 1 3.8028 -5.3910 3.0301 40 1 4.0726 -5.0598 0.6766 41 1 3.7830 -3.3114 0.8083 42 1 6.0170 -4.0841 2.4916 43 1 6.2785 -4.6434 0.8219 44 1 8.1252 -3.0028 1.1913 45 1 11.1305 -2.0820 0.0741 46 1 6.0498 -1.9225 3.0900 47 1 6.1124 -0.5614 1.9426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088251786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:54 Heat of formation + Delta-G solvation = -35.720580 kcal Electronic energy + Delta-G solvation = -24272.537353 eV Core-core repulsion = 21069.154277 eV Total energy + Delta-G solvation = -3203.383076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33183 -37.78640 -35.43787 -34.92469 -33.78559 -32.03462 -29.63923 -28.95383 -27.09027 -26.72069 -25.97406 -23.67176 -22.66730 -21.00622 -20.18019 -19.75583 -18.30637 -17.08593 -16.82626 -15.96667 -15.78787 -15.21421 -14.56976 -14.41322 -14.02819 -13.78585 -13.64542 -13.52252 -13.11691 -12.85137 -12.68204 -12.31084 -12.15447 -12.12301 -11.83710 -11.71508 -11.46923 -11.07226 -10.97089 -10.90103 -10.82356 -10.76128 -10.69621 -10.62658 -10.41166 -10.17994 -10.02165 -9.80319 -9.52934 -9.13655 -8.93782 -8.13555 -6.86035 -5.67730 -2.95781 3.01021 3.35558 3.51048 3.57199 3.61814 4.62134 4.71583 4.74726 4.80617 4.91250 4.98539 5.07853 5.26040 5.31707 5.38775 5.41936 5.46348 5.55022 5.60017 5.66252 5.69011 5.71458 5.79061 5.85479 5.88193 5.90310 5.96771 5.99506 6.08492 6.15560 6.18807 6.22756 6.38629 6.41734 6.49500 6.52656 6.58105 6.74146 6.82441 6.94691 7.26236 7.82432 7.90627 8.51652 8.61841 9.63112 10.18507 10.53829 11.55134 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.005925 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.864179 B = 4724.302245 C = 6146.682847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.505 3.495 6 O -0.522 6.522 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.152 4.152 10 C -0.113 4.113 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.165 3.835 14 H 0.063 0.937 15 N -0.720 5.720 16 C -0.229 4.229 17 H 0.075 0.925 18 C -0.016 4.016 19 N -0.937 5.937 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.100 3.900 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.070 0.930 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 -1.364 7.670 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.293 3.707 6 O -0.398 6.398 7 N -0.341 5.341 8 C -0.016 4.016 9 C -0.189 4.189 10 C -0.150 4.150 11 C -0.154 4.154 12 C -0.168 4.168 13 C 0.054 3.946 14 H 0.081 0.919 15 N -0.361 5.361 16 C -0.360 4.360 17 H 0.093 0.907 18 C -0.211 4.211 19 N -0.587 5.587 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.024 4.024 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.216 0.784 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.916 -0.972 7.017 21.138 hybrid contribution 0.615 0.437 -0.230 0.788 sum -19.301 -0.535 6.788 20.466 Atomic orbital electron populations 1.21858 0.95353 1.01444 1.01704 1.20860 0.94611 0.97049 0.97521 1.21954 1.03635 0.94859 1.00556 1.21806 0.93143 1.02217 1.00401 1.20550 0.89679 0.78090 0.82413 1.90735 1.70007 1.46730 1.32341 1.47990 1.08149 1.57282 1.20642 1.21542 0.96511 0.94484 0.89024 1.22338 1.03322 0.94458 0.98786 1.21711 0.99258 0.98432 0.95629 1.21660 0.96255 1.01174 0.96323 1.22089 0.94899 0.98601 1.01233 1.20692 0.87133 0.90898 0.95850 0.91943 1.42414 1.00514 1.39235 1.53921 1.19411 0.90966 1.07930 1.17691 0.90698 1.24715 0.96019 0.99493 1.00885 1.69671 1.01980 1.39527 1.47474 0.86148 0.78629 0.81313 0.80443 1.20416 1.22012 1.22001 1.22563 0.76853 1.02382 1.00651 0.92875 0.92565 0.92865 0.90371 0.93698 0.90316 0.93193 0.89458 0.89571 0.92357 0.90460 0.91443 0.89186 0.92546 0.92316 0.92963 0.91970 0.91949 0.91902 0.78399 0.93758 0.91203 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.08 -0.95 2.57 -90.62 -0.23 -1.18 16 3 C -0.15 -1.93 8.93 37.16 0.33 -1.60 16 4 C -0.14 -1.51 3.56 -27.89 -0.10 -1.61 16 5 C 0.51 7.89 5.87 -10.99 -0.06 7.83 16 6 O -0.52 -10.62 12.71 5.55 0.07 -10.55 16 7 N -0.61 -8.84 1.68 -174.39 -0.29 -9.14 16 8 C 0.11 1.14 5.88 -4.44 -0.03 1.11 16 9 C -0.15 -1.57 5.45 -26.56 -0.14 -1.72 16 10 C -0.11 -1.19 5.75 -26.30 -0.15 -1.34 16 11 C -0.12 -1.60 5.40 -26.51 -0.14 -1.74 16 12 C -0.13 -2.19 4.97 -26.60 -0.13 -2.32 16 13 C 0.17 3.41 2.39 -67.87 -0.16 3.25 16 14 H 0.06 1.47 6.13 -51.93 -0.32 1.15 16 15 N -0.72 -18.55 5.12 -53.37 -0.27 -18.82 16 16 C -0.23 -6.65 9.91 -15.06 -0.15 -6.79 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 19 N -0.94 -28.91 13.06 55.49 0.72 -28.19 16 20 Si 0.90 23.52 29.55 -169.99 -5.02 18.49 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 24 C 0.10 1.83 4.76 -4.15 -0.02 1.81 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.06 7.95 -51.93 -0.41 0.64 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.82 7.51 -51.93 -0.39 0.43 16 33 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.65 5.76 -51.93 -0.30 0.35 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.12 3.35 -51.93 -0.17 0.95 16 38 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.94 5.37 -51.93 -0.28 0.66 16 42 H 0.06 0.97 5.47 -51.93 -0.28 0.69 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.38 10.29 7.80 -40.82 -0.32 9.98 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.07 1.18 6.07 -51.93 -0.32 0.86 16 47 H 0.07 1.61 8.07 -51.93 -0.42 1.19 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -32.46 346.56 -8.44 -40.90 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.12 Total: 7.89 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.75 Total: -5.82 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.16 Total: -56.15 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.46 -8.44 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088251786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.178 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds