Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 C 1.52993 * 109.47498 * 120.00227 * 2 1 3 5 5 C 1.50697 * 109.47368 * 175.00083 * 4 2 1 6 6 O 1.21287 * 119.99658 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00337 * 180.02562 * 5 4 2 8 8 C 1.45337 * 120.36250 * 359.97438 * 7 5 4 9 9 C 1.53447 * 108.41485 * 136.67545 * 8 7 5 10 10 C 1.52874 * 109.38705 * 282.27670 * 9 8 7 11 11 C 1.53957 * 109.72850 * 72.89167 * 10 9 8 12 12 C 1.52450 * 110.72812 * 44.36697 * 11 10 9 13 13 C 1.53797 * 109.40219 * 246.26741 * 12 11 10 14 14 H 1.09000 * 109.52746 * 317.93146 * 13 12 11 15 15 N 1.46505 * 109.52052 * 197.74231 * 13 12 11 16 16 C 1.36930 * 119.99882 * 155.00033 * 15 13 12 17 17 H 1.08000 * 120.00582 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99825 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00386 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99846 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47087 * 120.00040 * 20 18 16 23 23 H 1.48508 * 109.46873 * 239.99772 * 20 18 16 24 24 C 1.46960 * 120.36508 * 179.97438 * 7 5 4 25 25 H 1.09003 * 109.47030 * 299.99671 * 1 2 3 26 26 H 1.08998 * 109.47378 * 59.99765 * 1 2 3 27 27 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46684 * 240.00707 * 2 1 3 29 29 H 1.09003 * 109.46882 * 60.00239 * 3 2 1 30 30 H 1.08994 * 109.47318 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47225 * 300.00724 * 3 2 1 32 32 H 1.09004 * 109.47155 * 54.99704 * 4 2 1 33 33 H 1.09005 * 109.46865 * 294.99781 * 4 2 1 34 34 H 1.09002 * 109.67497 * 256.40801 * 8 7 5 35 35 H 1.09000 * 109.67564 * 16.90783 * 8 7 5 36 36 H 1.08998 * 109.48126 * 162.29830 * 9 8 7 37 37 H 1.09000 * 109.48216 * 42.25426 * 9 8 7 38 38 H 1.09000 * 109.42579 * 312.81449 * 10 9 8 39 39 H 1.08994 * 109.42741 * 192.97069 * 10 9 8 40 40 H 1.09000 * 109.22118 * 164.68883 * 11 10 9 41 41 H 1.08993 * 109.22736 * 284.08233 * 11 10 9 42 42 H 1.08999 * 109.48249 * 6.24686 * 12 11 10 43 43 H 1.08998 * 109.48060 * 126.28651 * 12 11 10 44 44 H 0.96997 * 119.99775 * 334.99725 * 15 13 12 45 45 H 0.97001 * 120.00628 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.53134 * 171.72952 * 24 7 5 47 47 H 1.08996 * 109.53771 * 51.50085 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5420 -0.8294 1.1887 6 8 4.1450 -0.3747 0.2397 7 7 4.2150 -1.4322 2.1888 8 6 3.5003 -1.9802 3.3295 9 6 4.0976 -3.3542 3.6611 10 6 3.5711 -4.3897 2.6673 11 6 4.2342 -4.1764 1.2943 12 6 5.7322 -3.9394 1.4495 13 6 6.0691 -2.5014 1.0206 14 1 5.5144 -2.2515 0.1162 15 7 7.5067 -2.3922 0.7606 16 6 7.9773 -1.4282 -0.0905 17 1 7.2886 -0.7487 -0.5705 18 6 9.3394 -1.3251 -0.3373 19 7 10.1786 -2.1542 0.2463 20 14 9.9814 -0.0096 -1.4979 21 1 8.8429 0.7877 -2.0206 22 1 10.9164 0.8823 -0.7663 23 1 10.6952 -0.6536 -2.6298 24 6 5.6796 -1.5425 2.1378 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9565 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.6113 -1.3153 4.1861 35 1 2.4440 -2.0884 3.0833 36 1 3.8095 -3.6414 4.6723 37 1 5.1843 -3.3043 3.5928 38 1 2.4910 -4.2814 2.5690 39 1 3.8028 -5.3910 3.0301 40 1 4.0726 -5.0598 0.6766 41 1 3.7830 -3.3114 0.8083 42 1 6.0170 -4.0841 2.4916 43 1 6.2785 -4.6434 0.8219 44 1 8.1252 -3.0028 1.1913 45 1 11.1305 -2.0820 0.0741 46 1 6.0498 -1.9225 3.0900 47 1 6.1124 -0.5614 1.9426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088251786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = -55.849124 kcal Electronic energy + Delta-G solvation = -24273.410192 eV Core-core repulsion = 21069.154277 eV Total energy + Delta-G solvation = -3204.255915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55520 -39.02150 -36.66681 -36.39784 -35.05018 -33.89408 -31.28111 -30.16254 -28.05802 -27.92517 -27.11645 -25.64236 -23.85713 -22.45753 -21.26356 -20.85759 -19.53039 -19.08969 -18.06927 -17.28640 -17.07736 -16.36596 -16.25429 -15.62254 -15.38944 -15.26225 -15.02143 -14.67254 -14.35786 -14.21433 -13.96048 -13.53156 -13.29884 -13.13601 -13.02366 -12.97858 -12.80848 -12.70030 -12.59758 -12.20866 -12.06162 -11.98541 -11.94941 -11.73536 -11.70568 -11.54177 -11.41967 -11.37006 -11.24176 -11.01247 -10.43280 -9.54393 -8.92036 -7.98586 -5.26074 1.40093 1.40334 1.52352 1.81844 2.17368 2.53267 3.34220 3.62992 3.79303 3.91888 3.97639 4.03309 4.05486 4.14646 4.21269 4.29996 4.37524 4.50067 4.54471 4.64101 4.69891 4.71942 4.74955 4.81040 4.84931 4.86752 4.89735 4.97032 5.05087 5.07977 5.13713 5.19407 5.29066 5.33014 5.34346 5.44569 5.46737 5.50240 5.51268 5.56440 5.60408 5.79811 6.25970 6.67103 7.31399 7.42318 8.05447 8.31320 9.24579 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.005925 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.864179 B = 4724.302245 C = 6146.682847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.124 4.124 5 C 0.495 3.505 6 O -0.582 6.582 7 N -0.602 5.602 8 C 0.101 3.899 9 C -0.150 4.150 10 C -0.106 4.106 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.166 3.834 14 H 0.027 0.973 15 N -0.732 5.732 16 C -0.231 4.231 17 H 0.055 0.945 18 C -0.069 4.069 19 N -0.965 5.965 20 Si 0.964 3.036 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.287 1.287 24 C 0.117 3.883 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.375 0.625 45 H 0.252 0.748 46 H 0.089 0.911 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.532 -2.046 9.794 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.208 4.208 4 C -0.163 4.163 5 C 0.285 3.715 6 O -0.462 6.462 7 N -0.335 5.335 8 C -0.021 4.021 9 C -0.187 4.187 10 C -0.143 4.143 11 C -0.151 4.151 12 C -0.158 4.158 13 C 0.057 3.943 14 H 0.045 0.955 15 N -0.372 5.372 16 C -0.363 4.363 17 H 0.074 0.926 18 C -0.261 4.261 19 N -0.616 5.616 20 Si 0.794 3.206 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.214 1.214 24 C -0.008 4.008 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.107 0.893 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.232 -1.669 9.184 25.037 hybrid contribution 1.574 0.649 -0.895 1.923 sum -21.658 -1.020 8.289 23.212 Atomic orbital electron populations 1.21785 0.92365 1.02712 1.02615 1.20857 0.96896 0.95746 0.96698 1.21908 1.00884 0.96361 1.01674 1.21849 0.88939 1.04307 1.01250 1.21535 0.91736 0.76832 0.81424 1.90726 1.71588 1.49126 1.34784 1.47996 1.06397 1.57133 1.21943 1.21949 0.97691 0.94742 0.87736 1.22320 1.01564 0.94224 1.00601 1.21708 1.00438 0.99195 0.92942 1.21616 0.93684 1.00681 0.99071 1.21986 0.97373 0.94861 1.01566 1.20793 0.83936 0.94185 0.95372 0.95514 1.42528 1.02607 1.38408 1.53681 1.19458 0.90990 1.08058 1.17813 0.92649 1.25405 0.96149 1.01770 1.02812 1.69789 1.01999 1.40988 1.48851 0.85207 0.77813 0.78962 0.78644 1.20550 1.21309 1.21404 1.21936 0.79855 0.98841 1.00185 0.91088 0.92589 0.91402 0.93421 0.91753 0.94511 0.92893 0.86456 0.86542 0.90595 0.87119 0.88098 0.91782 0.89772 0.91075 0.92444 0.93525 0.90207 0.94089 0.79258 0.93886 0.89331 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 71.98 0.66 -1.29 16 2 C -0.08 -1.82 2.57 -10.79 -0.03 -1.85 16 3 C -0.15 -3.81 8.93 71.98 0.64 -3.17 16 4 C -0.12 -2.41 3.56 29.85 0.11 -2.31 16 5 C 0.49 15.46 5.87 87.66 0.51 15.98 16 6 O -0.58 -25.38 12.71 -3.05 -0.04 -25.42 16 7 N -0.60 -17.05 1.68 -824.02 -1.39 -18.44 16 8 C 0.10 1.70 5.88 86.75 0.51 2.21 16 9 C -0.15 -2.47 5.45 30.70 0.17 -2.30 16 10 C -0.11 -1.77 5.75 30.88 0.18 -1.60 16 11 C -0.11 -2.93 5.40 30.74 0.17 -2.77 16 12 C -0.12 -4.08 4.97 30.68 0.15 -3.93 16 13 C 0.17 7.25 2.39 45.03 0.11 7.36 16 14 H 0.03 1.36 6.13 -2.39 -0.01 1.35 16 15 N -0.73 -39.88 5.12 -322.76 -1.65 -41.53 16 16 C -0.23 -14.18 9.91 84.04 0.83 -13.35 16 17 H 0.06 3.56 7.83 -2.91 -0.02 3.53 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 20 Si 0.96 50.03 29.55 68.60 2.03 52.06 16 21 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 24 C 0.12 4.46 4.76 86.06 0.41 4.87 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 1.33 7.95 -2.39 -0.02 1.31 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.24 5.95 -2.39 -0.01 1.23 16 31 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.12 1.63 7.51 -2.38 -0.02 1.61 16 33 H 0.12 1.63 8.09 -2.38 -0.02 1.61 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.19 5.76 -2.39 -0.01 1.18 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.43 3.35 -2.39 -0.01 1.42 16 38 H 0.08 1.03 7.87 -2.39 -0.02 1.01 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.37 5.37 -2.39 -0.01 1.36 16 42 H 0.08 2.43 5.47 -2.39 -0.01 2.42 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.38 21.20 7.80 -92.71 -0.72 20.48 16 45 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.09 3.00 6.07 -2.39 -0.01 2.99 16 47 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 Total: -1.00 -77.62 346.56 4.34 -73.27 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.22 Total: 26.92 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 4.89 Total: -5.91 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -2.76 Total: -120.93 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.04 Total: -25.42 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.03 Total: 52.06 kcal Total: -77.62 4.34 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088251786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.426 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds