Wall clock time and date at job start Tue Mar 31 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 C 1.53002 * 109.46911 * 239.99982 * 2 1 3 5 5 C 1.50706 * 109.47399 * 120.00164 * 2 1 3 6 6 O 1.21278 * 119.99414 * 5.27052 * 5 2 1 7 7 N 1.34766 * 119.99872 * 185.26956 * 5 2 1 8 8 C 1.47134 * 120.18284 * 355.69197 * 7 5 2 9 9 C 1.53621 * 107.51925 * 107.86765 * 8 7 5 10 10 C 1.53484 * 108.44832 * 69.78141 * 9 8 7 11 11 C 1.52463 * 109.14884 * 245.78336 * 10 9 8 12 12 C 1.53123 * 109.67132 * 43.92219 * 11 10 9 13 13 C 1.53431 * 109.34199 * 77.05569 * 12 11 10 14 14 H 1.08993 * 109.80273 * 47.45927 * 13 12 11 15 15 N 1.46505 * 109.62891 * 167.95564 * 13 12 11 16 16 C 1.36929 * 119.99973 * 301.34980 * 15 13 12 17 17 H 1.08000 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00136 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00323 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99979 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47114 * 90.00007 * 20 18 16 22 22 H 1.48498 * 109.47017 * 210.00503 * 20 18 16 23 23 H 1.48505 * 109.47071 * 330.00320 * 20 18 16 24 24 C 1.46069 * 120.17777 * 175.71379 * 7 5 2 25 25 H 1.09007 * 109.46895 * 299.99435 * 1 2 3 26 26 H 1.08993 * 109.47690 * 59.99823 * 1 2 3 27 27 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47262 * 204.31480 * 3 2 1 29 29 H 1.09000 * 109.47549 * 324.31643 * 3 2 1 30 30 H 1.08998 * 109.47110 * 84.31664 * 3 2 1 31 31 H 1.08997 * 109.47209 * 339.65269 * 4 2 1 32 32 H 1.09007 * 109.46910 * 99.64977 * 4 2 1 33 33 H 1.09002 * 109.47007 * 219.65019 * 4 2 1 34 34 H 1.08998 * 109.84163 * 348.36490 * 8 7 5 35 35 H 1.08998 * 109.90127 * 227.40474 * 8 7 5 36 36 H 1.09001 * 109.64332 * 310.09001 * 9 8 7 37 37 H 1.08999 * 109.63917 * 189.46996 * 9 8 7 38 38 H 1.09000 * 109.52928 * 125.87963 * 10 9 8 39 39 H 1.08994 * 109.58047 * 5.71195 * 10 9 8 40 40 H 1.09011 * 109.43456 * 283.86446 * 11 10 9 41 41 H 1.09001 * 109.40937 * 163.96900 * 11 10 9 42 42 H 1.08994 * 109.49125 * 317.09204 * 12 11 10 43 43 H 1.09000 * 109.51329 * 197.02437 * 12 11 10 44 44 H 0.97001 * 119.99840 * 121.34869 * 15 13 12 45 45 H 0.97001 * 120.00571 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.36547 * 172.82450 * 24 7 5 47 47 H 1.09007 * 109.36099 * 53.22501 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2305 6 8 1.2484 -1.2542 1.9792 7 7 3.3527 -0.7415 1.4987 8 6 4.3149 -0.1660 0.5458 9 6 4.8543 1.1339 1.1616 10 6 5.7453 0.7716 2.3576 11 6 5.0958 1.2838 3.6384 12 6 3.5973 0.9698 3.6176 13 6 3.3845 -0.5144 3.9433 14 1 3.9733 -0.7884 4.8187 15 7 1.9649 -0.7615 4.2081 16 6 1.3286 -0.0863 5.2151 17 1 1.8730 0.6288 5.8139 18 6 -0.0163 -0.3209 5.4663 19 7 -0.6282 0.3285 6.4339 20 14 -0.9583 -1.5572 4.4300 21 1 -0.8628 -2.9012 5.0543 22 1 -2.3839 -1.1498 4.3476 23 1 -0.3769 -1.6033 3.0643 24 6 3.8365 -1.3472 2.7367 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.0440 1.4729 -0.4231 29 1 1.3741 2.0633 -0.5994 30 1 2.0651 1.8189 1.0226 31 1 1.2526 -1.3626 -1.6454 32 1 2.3235 0.0136 -2.0028 33 1 2.9071 -1.3286 -0.9896 34 1 3.8156 0.0510 -0.3985 35 1 5.1348 -0.8646 0.3789 36 1 4.0225 1.7525 1.4984 37 1 5.4402 1.6754 0.4189 38 1 6.7247 1.2342 2.2357 39 1 5.8583 -0.3110 2.4143 40 1 5.2395 2.3619 3.7119 41 1 5.5566 0.7970 4.4979 42 1 3.1939 1.1866 2.6285 43 1 3.0866 1.5821 4.3609 44 1 1.4758 -1.4035 3.6699 45 1 -1.5679 0.1644 6.6097 46 1 4.9254 -1.3919 2.7159 47 1 3.4369 -2.3576 2.8249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088416327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:59 Heat of formation + Delta-G solvation = 16.216422 kcal Electronic energy + Delta-G solvation = -25720.852270 eV Core-core repulsion = 22519.721352 eV Total energy + Delta-G solvation = -3201.130918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84861 -37.70003 -36.07235 -34.31289 -33.65974 -31.79769 -29.85732 -27.72716 -27.49013 -27.03906 -26.13745 -23.93050 -22.69209 -21.96507 -20.29108 -19.42309 -17.83481 -17.61863 -16.48331 -16.01981 -15.41357 -15.08312 -14.63454 -14.37607 -13.99304 -13.78331 -13.61366 -13.40123 -13.06530 -12.51825 -12.40462 -12.26935 -12.17902 -12.00575 -11.82440 -11.63234 -11.50955 -11.40570 -11.15262 -11.03344 -10.82277 -10.67688 -10.57106 -10.46044 -10.16258 -9.97876 -9.84922 -9.53867 -9.23858 -8.86326 -8.55875 -8.13373 -6.87329 -5.49514 -2.80502 3.09553 3.32629 3.66732 3.74234 3.99570 4.55281 4.75481 4.83572 4.86749 4.95960 4.96492 5.13534 5.23203 5.31034 5.40565 5.41988 5.47927 5.50228 5.61867 5.70171 5.73522 5.78607 5.80801 5.87492 5.88530 5.91835 5.96752 6.01525 6.07442 6.16009 6.17906 6.26527 6.31539 6.38054 6.46986 6.52949 6.65090 6.72738 6.89846 7.07864 7.26889 7.77422 8.27768 8.65621 8.80807 9.64643 10.35067 10.61647 11.68605 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.009089 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.237422 B = 3080.054136 C = 4206.582383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.147 4.147 5 C 0.513 3.487 6 O -0.492 6.492 7 N -0.606 5.606 8 C 0.092 3.908 9 C -0.153 4.153 10 C -0.126 4.126 11 C -0.119 4.119 12 C -0.143 4.143 13 C 0.169 3.831 14 H 0.036 0.964 15 N -0.746 5.746 16 C -0.231 4.231 17 H 0.080 0.920 18 C 0.003 3.997 19 N -0.946 5.946 20 Si 0.844 3.156 21 H -0.296 1.296 22 H -0.303 1.303 23 H -0.208 1.208 24 C 0.106 3.894 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.086 0.914 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 0.599 -18.454 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.208 4.208 4 C -0.204 4.204 5 C 0.301 3.699 6 O -0.366 6.366 7 N -0.341 5.341 8 C -0.031 4.031 9 C -0.191 4.191 10 C -0.163 4.163 11 C -0.157 4.157 12 C -0.182 4.182 13 C 0.059 3.941 14 H 0.053 0.947 15 N -0.402 5.402 16 C -0.361 4.361 17 H 0.098 0.902 18 C -0.192 4.192 19 N -0.595 5.595 20 Si 0.674 3.326 21 H -0.224 1.224 22 H -0.231 1.231 23 H -0.132 1.132 24 C -0.016 4.016 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.609 0.377 -17.915 21.911 hybrid contribution -0.673 -0.606 -0.315 0.959 sum 11.936 -0.229 -18.230 21.792 Atomic orbital electron populations 1.21733 0.92049 1.02754 1.01951 1.20720 0.97969 0.96214 0.93741 1.22355 1.01194 0.94092 1.03177 1.22119 1.01629 1.00544 0.96137 1.20680 0.81826 0.80692 0.86679 1.90604 1.53995 1.44316 1.47662 1.47860 1.05791 1.59866 1.20550 1.22418 0.92718 0.94740 0.93182 1.22645 1.00668 0.98014 0.97809 1.21880 0.97860 1.01393 0.95178 1.21536 0.97389 0.99960 0.96850 1.22513 0.93496 0.99536 1.02676 1.20724 0.87875 0.92520 0.93009 0.94657 1.43685 1.05694 1.50822 1.39984 1.19006 0.92915 1.17259 1.06969 0.90213 1.24559 0.96508 0.99781 0.98354 1.69733 1.10509 1.45737 1.33543 0.87096 0.79057 0.81225 0.85232 1.22362 1.23066 1.13182 1.21975 0.98724 0.96867 0.84072 0.91541 0.92551 0.92034 0.91299 0.91940 0.91490 0.91886 0.91639 0.91857 0.88504 0.91346 0.89328 0.91841 0.92854 0.91316 0.93036 0.92388 0.91072 0.91564 0.76954 0.93687 0.89647 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.41 37.16 0.28 -1.57 16 2 C -0.08 -1.09 0.75 -155.66 -0.12 -1.21 16 3 C -0.15 -1.73 6.97 37.16 0.26 -1.47 16 4 C -0.15 -1.44 7.88 37.16 0.29 -1.15 16 5 C 0.51 8.65 5.30 -10.99 -0.06 8.60 16 6 O -0.49 -10.73 9.31 5.56 0.05 -10.68 16 7 N -0.61 -8.64 1.69 -172.88 -0.29 -8.93 16 8 C 0.09 0.93 4.23 -3.37 -0.01 0.91 16 9 C -0.15 -1.56 4.53 -26.16 -0.12 -1.67 16 10 C -0.13 -1.37 5.48 -26.75 -0.15 -1.51 16 11 C -0.12 -1.66 5.67 -26.94 -0.15 -1.81 16 12 C -0.14 -2.59 4.87 -26.44 -0.13 -2.72 16 13 C 0.17 3.37 2.87 -67.49 -0.19 3.18 16 14 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 15 N -0.75 -18.93 4.31 -53.00 -0.23 -19.16 16 16 C -0.23 -6.94 9.67 -15.06 -0.15 -7.09 16 17 H 0.08 2.55 7.40 -52.49 -0.39 2.16 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 19 N -0.95 -31.85 13.97 55.49 0.78 -31.07 16 20 Si 0.84 23.66 27.72 -169.99 -4.71 18.95 16 21 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 22 H -0.30 -8.69 7.11 56.52 0.40 -8.29 16 23 H -0.21 -5.53 4.01 56.52 0.23 -5.30 16 24 C 0.11 1.68 4.86 -4.06 -0.02 1.66 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.06 0.94 8.03 -51.93 -0.42 0.53 16 28 H 0.07 0.62 4.71 -51.93 -0.24 0.38 16 29 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 30 H 0.07 0.95 6.00 -51.93 -0.31 0.63 16 31 H 0.06 0.62 7.70 -51.93 -0.40 0.22 16 32 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 33 H 0.06 0.60 6.03 -51.93 -0.31 0.29 16 34 H 0.10 0.84 2.89 -51.93 -0.15 0.69 16 35 H 0.07 0.58 7.97 -51.93 -0.41 0.17 16 36 H 0.09 1.09 3.78 -51.93 -0.20 0.89 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.73 4.50 -51.93 -0.23 0.50 16 40 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 42 H 0.07 1.26 2.63 -51.93 -0.14 1.12 16 43 H 0.07 1.46 6.87 -51.93 -0.36 1.10 16 44 H 0.38 9.92 2.65 -42.56 -0.11 9.81 16 45 H 0.25 8.23 8.31 -40.82 -0.34 7.89 16 46 H 0.09 1.08 5.07 -51.93 -0.26 0.82 16 47 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -35.93 315.77 -7.41 -43.34 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.40 Total: 8.67 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.36 Total: -5.88 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.25 Total: -59.17 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.05 Total: -10.68 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.71 Total: 18.95 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.93 -7.41 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088416327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.561 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds