Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 C 1.53002 * 109.46911 * 239.99982 * 2 1 3 5 5 C 1.50706 * 109.47399 * 120.00164 * 2 1 3 6 6 O 1.21278 * 119.99414 * 5.27052 * 5 2 1 7 7 N 1.34766 * 119.99872 * 185.26956 * 5 2 1 8 8 C 1.47134 * 120.18284 * 355.69197 * 7 5 2 9 9 C 1.53621 * 107.51925 * 107.86765 * 8 7 5 10 10 C 1.53484 * 108.44832 * 69.78141 * 9 8 7 11 11 C 1.52463 * 109.14884 * 245.78336 * 10 9 8 12 12 C 1.53123 * 109.67132 * 43.92219 * 11 10 9 13 13 C 1.53431 * 109.34199 * 77.05569 * 12 11 10 14 14 H 1.08993 * 109.80273 * 47.45927 * 13 12 11 15 15 N 1.46505 * 109.62891 * 167.95564 * 13 12 11 16 16 C 1.36929 * 119.99973 * 301.34980 * 15 13 12 17 17 H 1.08000 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00136 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00323 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99979 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47114 * 90.00007 * 20 18 16 22 22 H 1.48498 * 109.47017 * 210.00503 * 20 18 16 23 23 H 1.48505 * 109.47071 * 330.00320 * 20 18 16 24 24 C 1.46069 * 120.17777 * 175.71379 * 7 5 2 25 25 H 1.09007 * 109.46895 * 299.99435 * 1 2 3 26 26 H 1.08993 * 109.47690 * 59.99823 * 1 2 3 27 27 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47262 * 204.31480 * 3 2 1 29 29 H 1.09000 * 109.47549 * 324.31643 * 3 2 1 30 30 H 1.08998 * 109.47110 * 84.31664 * 3 2 1 31 31 H 1.08997 * 109.47209 * 339.65269 * 4 2 1 32 32 H 1.09007 * 109.46910 * 99.64977 * 4 2 1 33 33 H 1.09002 * 109.47007 * 219.65019 * 4 2 1 34 34 H 1.08998 * 109.84163 * 348.36490 * 8 7 5 35 35 H 1.08998 * 109.90127 * 227.40474 * 8 7 5 36 36 H 1.09001 * 109.64332 * 310.09001 * 9 8 7 37 37 H 1.08999 * 109.63917 * 189.46996 * 9 8 7 38 38 H 1.09000 * 109.52928 * 125.87963 * 10 9 8 39 39 H 1.08994 * 109.58047 * 5.71195 * 10 9 8 40 40 H 1.09011 * 109.43456 * 283.86446 * 11 10 9 41 41 H 1.09001 * 109.40937 * 163.96900 * 11 10 9 42 42 H 1.08994 * 109.49125 * 317.09204 * 12 11 10 43 43 H 1.09000 * 109.51329 * 197.02437 * 12 11 10 44 44 H 0.97001 * 119.99840 * 121.34869 * 15 13 12 45 45 H 0.97001 * 120.00571 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.36547 * 172.82450 * 24 7 5 47 47 H 1.09007 * 109.36099 * 53.22501 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2305 6 8 1.2484 -1.2542 1.9792 7 7 3.3527 -0.7415 1.4987 8 6 4.3149 -0.1660 0.5458 9 6 4.8543 1.1339 1.1616 10 6 5.7453 0.7716 2.3576 11 6 5.0958 1.2838 3.6384 12 6 3.5973 0.9698 3.6176 13 6 3.3845 -0.5144 3.9433 14 1 3.9733 -0.7884 4.8187 15 7 1.9649 -0.7615 4.2081 16 6 1.3286 -0.0863 5.2151 17 1 1.8730 0.6288 5.8139 18 6 -0.0163 -0.3209 5.4663 19 7 -0.6282 0.3285 6.4339 20 14 -0.9583 -1.5572 4.4300 21 1 -0.8628 -2.9012 5.0543 22 1 -2.3839 -1.1498 4.3476 23 1 -0.3769 -1.6033 3.0643 24 6 3.8365 -1.3472 2.7367 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.0440 1.4729 -0.4231 29 1 1.3741 2.0633 -0.5994 30 1 2.0651 1.8189 1.0226 31 1 1.2526 -1.3626 -1.6454 32 1 2.3235 0.0136 -2.0028 33 1 2.9071 -1.3286 -0.9896 34 1 3.8156 0.0510 -0.3985 35 1 5.1348 -0.8646 0.3789 36 1 4.0225 1.7525 1.4984 37 1 5.4402 1.6754 0.4189 38 1 6.7247 1.2342 2.2357 39 1 5.8583 -0.3110 2.4143 40 1 5.2395 2.3619 3.7119 41 1 5.5566 0.7970 4.4979 42 1 3.1939 1.1866 2.6285 43 1 3.0866 1.5821 4.3609 44 1 1.4758 -1.4035 3.6699 45 1 -1.5679 0.1644 6.6097 46 1 4.9254 -1.3919 2.7159 47 1 3.4369 -2.3576 2.8249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088416327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = -8.478516 kcal Electronic energy + Delta-G solvation = -25721.923123 eV Core-core repulsion = 22519.721352 eV Total energy + Delta-G solvation = -3202.201771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03427 -38.95338 -37.37899 -35.92209 -34.86979 -33.77287 -31.60866 -28.98515 -28.44889 -28.17914 -27.26224 -25.49416 -24.33556 -23.12492 -21.48899 -20.76155 -19.83892 -18.95604 -17.57325 -17.42283 -16.79546 -16.70587 -15.92470 -15.68151 -15.40866 -15.09524 -15.02477 -14.64891 -14.27523 -13.95956 -13.69570 -13.67834 -13.39809 -13.23140 -13.10182 -12.92772 -12.80902 -12.69835 -12.58717 -12.49997 -12.29637 -11.94156 -11.85549 -11.73619 -11.53427 -11.46108 -11.30464 -11.13327 -10.93034 -10.80807 -10.25968 -9.39611 -9.08835 -7.97768 -5.22678 1.35877 1.39121 1.73011 1.87695 2.21616 2.59236 3.33731 3.52780 3.69931 3.89399 3.95950 4.00232 4.06611 4.12892 4.24548 4.28907 4.38428 4.49494 4.53994 4.63255 4.66300 4.71786 4.74199 4.79201 4.85927 4.89643 4.91367 4.97721 5.02385 5.09475 5.14211 5.17209 5.26461 5.28466 5.36135 5.43391 5.48350 5.54515 5.59080 5.72659 5.76725 5.89289 6.28573 6.61940 7.20064 7.50356 8.10497 8.42937 9.24085 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.009089 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.237422 B = 3080.054136 C = 4206.582383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.146 4.146 4 C -0.141 4.141 5 C 0.501 3.499 6 O -0.554 6.554 7 N -0.600 5.600 8 C 0.086 3.914 9 C -0.153 4.153 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.133 4.133 13 C 0.154 3.846 14 H 0.026 0.974 15 N -0.751 5.751 16 C -0.203 4.203 17 H 0.047 0.953 18 C -0.068 4.068 19 N -0.994 5.994 20 Si 0.907 3.093 21 H -0.300 1.300 22 H -0.313 1.313 23 H -0.186 1.186 24 C 0.115 3.885 25 H 0.024 0.976 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.010 0.990 44 H 0.386 0.614 45 H 0.250 0.750 46 H 0.129 0.871 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.404 0.295 -22.945 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.198 4.198 5 C 0.291 3.709 6 O -0.432 6.432 7 N -0.333 5.333 8 C -0.034 4.034 9 C -0.190 4.190 10 C -0.157 4.157 11 C -0.151 4.151 12 C -0.172 4.172 13 C 0.046 3.954 14 H 0.044 0.956 15 N -0.407 5.407 16 C -0.335 4.335 17 H 0.065 0.935 18 C -0.258 4.258 19 N -0.647 5.647 20 Si 0.736 3.264 21 H -0.228 1.228 22 H -0.241 1.241 23 H -0.109 1.109 24 C -0.008 4.008 25 H 0.043 0.957 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.029 0.971 44 H 0.232 0.768 45 H 0.058 0.942 46 H 0.146 0.854 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.996 0.080 -22.476 27.587 hybrid contribution -1.556 -0.425 1.114 1.960 sum 14.439 -0.345 -21.362 25.787 Atomic orbital electron populations 1.21742 0.93644 1.01657 1.01421 1.20777 0.96746 0.97245 0.93665 1.22354 1.03483 0.92817 1.01602 1.22112 1.01783 1.01172 0.94746 1.21478 0.82253 0.79874 0.87268 1.90486 1.55734 1.47100 1.49880 1.47965 1.05931 1.58972 1.20416 1.22826 0.92744 0.95201 0.92675 1.22628 1.00132 0.97908 0.98378 1.21858 0.98861 1.01782 0.93153 1.21473 0.93938 1.00550 0.99185 1.22372 0.96622 0.96958 1.01257 1.21077 0.84730 0.94651 0.94988 0.95599 1.43867 1.07976 1.50210 1.38677 1.19018 0.92656 1.15262 1.06578 0.93533 1.25266 0.97776 1.02577 1.00228 1.69892 1.10569 1.48272 1.35965 0.86134 0.77014 0.78360 0.84852 1.22818 1.24101 1.10884 1.21836 1.00943 0.95016 0.83019 0.95695 0.89299 0.93469 0.88009 0.90346 0.94958 0.91958 0.88253 0.91043 0.86496 0.88119 0.91817 0.88133 0.90118 0.90652 0.92545 0.92750 0.90214 0.97121 0.76789 0.94197 0.85360 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 7.41 71.98 0.53 -3.06 16 2 C -0.08 -1.93 0.75 -52.93 -0.04 -1.97 16 3 C -0.15 -2.89 6.97 71.98 0.50 -2.38 16 4 C -0.14 -2.10 7.88 71.98 0.57 -1.53 16 5 C 0.50 16.25 5.30 87.66 0.46 16.72 16 6 O -0.55 -24.34 9.31 -3.02 -0.03 -24.37 16 7 N -0.60 -15.42 1.69 -819.26 -1.38 -16.81 16 8 C 0.09 1.25 4.23 86.47 0.37 1.62 16 9 C -0.15 -2.30 4.53 30.97 0.14 -2.16 16 10 C -0.12 -2.02 5.48 30.58 0.17 -1.85 16 11 C -0.11 -2.96 5.67 30.46 0.17 -2.78 16 12 C -0.13 -4.92 4.87 30.78 0.15 -4.77 16 13 C 0.15 6.23 2.87 45.28 0.13 6.36 16 14 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 15 N -0.75 -39.52 4.31 -321.59 -1.39 -40.90 16 16 C -0.20 -12.91 9.67 84.03 0.81 -12.09 16 17 H 0.05 3.21 7.40 -2.91 -0.02 3.19 16 18 C -0.07 -4.56 5.50 84.86 0.47 -4.09 16 19 N -0.99 -70.59 13.97 21.65 0.30 -70.29 16 20 Si 0.91 51.90 27.72 68.60 1.90 53.80 16 21 H -0.30 -17.19 7.11 99.48 0.71 -16.48 16 22 H -0.31 -18.19 7.11 99.48 0.71 -17.48 16 23 H -0.19 -10.02 4.01 99.48 0.40 -9.62 16 24 C 0.11 3.41 4.86 86.60 0.42 3.83 16 25 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 27 H 0.05 1.43 8.03 -2.39 -0.02 1.42 16 28 H 0.10 1.29 4.71 -2.39 -0.01 1.28 16 29 H 0.08 1.32 7.90 -2.39 -0.02 1.30 16 30 H 0.03 0.87 6.00 -2.39 -0.01 0.86 16 31 H 0.06 0.98 7.70 -2.39 -0.02 0.96 16 32 H 0.10 0.85 7.66 -2.38 -0.02 0.83 16 33 H 0.07 0.98 6.03 -2.39 -0.01 0.96 16 34 H 0.12 1.27 2.89 -2.39 -0.01 1.26 16 35 H 0.10 0.96 7.97 -2.39 -0.02 0.94 16 36 H 0.06 1.35 3.78 -2.39 -0.01 1.34 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.18 4.50 -2.39 -0.01 1.17 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 41 H 0.05 1.45 7.85 -2.39 -0.02 1.43 16 42 H 0.08 2.82 2.63 -2.39 -0.01 2.81 16 43 H 0.01 0.48 6.87 -2.39 -0.02 0.46 16 44 H 0.39 20.39 2.65 -120.22 -0.32 20.07 16 45 H 0.25 17.08 8.31 -92.71 -0.77 16.31 16 46 H 0.13 2.71 5.07 -2.39 -0.01 2.70 16 47 H 0.05 1.57 8.04 -2.38 -0.02 1.55 16 Total: -1.00 -87.05 315.77 4.61 -82.43 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.35 Total: 24.30 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 4.85 Total: -8.16 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -2.47 Total: -128.00 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.03 Total: -24.37 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.90 Total: 53.80 kcal Total: -87.05 4.61 -82.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088416327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.955 kcal (2) G-P(sol) polarization free energy of solvation -87.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds