Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.53004 * 109.47246 * 239.99465 * 2 1 3 5 5 C 1.50702 * 109.46708 * 120.00135 * 2 1 3 6 6 O 1.21279 * 120.00266 * 355.86206 * 5 2 1 7 7 N 1.34783 * 120.00096 * 175.86969 * 5 2 1 8 8 C 1.47145 * 120.18365 * 4.12763 * 7 5 2 9 9 C 1.53625 * 107.51006 * 252.11097 * 8 7 5 10 10 C 1.53484 * 108.45859 * 290.23772 * 9 8 7 11 11 C 1.52462 * 109.13392 * 114.22182 * 10 9 8 12 12 C 1.53123 * 109.68336 * 316.06461 * 11 10 9 13 13 C 1.53434 * 109.31532 * 282.96859 * 12 11 10 14 14 H 1.08999 * 109.63409 * 312.63666 * 13 12 11 15 15 N 1.46505 * 109.62870 * 192.04447 * 13 12 11 16 16 C 1.36935 * 119.99961 * 53.45049 * 15 13 12 17 17 H 1.08005 * 119.99860 * 359.97438 * 16 15 13 18 18 C 1.38803 * 120.00085 * 180.02562 * 16 15 13 19 19 N 1.31624 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00316 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46920 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47272 * 119.99480 * 20 18 16 23 23 H 1.48500 * 109.47356 * 239.99728 * 20 18 16 24 24 C 1.46054 * 120.18743 * 184.10709 * 7 5 2 25 25 H 1.09000 * 109.47102 * 300.00208 * 1 2 3 26 26 H 1.09007 * 109.46734 * 60.00577 * 1 2 3 27 27 H 1.09001 * 109.47485 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46684 * 157.90704 * 3 2 1 29 29 H 1.08998 * 109.47045 * 277.90520 * 3 2 1 30 30 H 1.08994 * 109.47362 * 37.90952 * 3 2 1 31 31 H 1.08998 * 109.47143 * 289.89177 * 4 2 1 32 32 H 1.09004 * 109.46697 * 49.89497 * 4 2 1 33 33 H 1.09000 * 109.46619 * 169.88842 * 4 2 1 34 34 H 1.09003 * 109.84779 * 11.60962 * 8 7 5 35 35 H 1.08993 * 109.84827 * 132.61196 * 8 7 5 36 36 H 1.09000 * 109.63392 * 49.93223 * 9 8 7 37 37 H 1.09000 * 109.63435 * 170.55047 * 9 8 7 38 38 H 1.09001 * 109.52759 * 234.11651 * 10 9 8 39 39 H 1.08996 * 109.53359 * 354.32877 * 10 9 8 40 40 H 1.09002 * 109.43873 * 76.12921 * 11 10 9 41 41 H 1.09004 * 109.44012 * 196.04379 * 11 10 9 42 42 H 1.09001 * 109.49764 * 163.01754 * 12 11 10 43 43 H 1.08995 * 109.49474 * 42.92241 * 12 11 10 44 44 H 0.96998 * 120.00062 * 233.44687 * 15 13 12 45 45 H 0.97003 * 119.99993 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.36118 * 306.75224 * 24 7 5 47 47 H 1.09003 * 109.36176 * 187.15450 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7105 1.2305 6 8 1.2467 -1.1053 2.0659 7 7 3.3545 -0.9070 1.4027 8 6 4.3169 -0.3509 0.4385 9 6 4.8825 -1.5227 -0.3782 10 6 5.7783 -2.3666 0.5390 11 6 5.1483 -3.7424 0.7247 12 6 3.6448 -3.5920 0.9730 13 6 3.4122 -3.1404 2.4208 14 1 4.0072 -3.7551 3.0962 15 7 1.9915 -3.2694 2.7544 16 6 1.3488 -4.4632 2.5623 17 1 1.8892 -5.3095 2.1645 18 6 0.0026 -4.5854 2.8778 19 7 -0.6560 -3.5538 3.3622 20 14 -0.8744 -6.2136 2.6151 21 1 0.0816 -7.2074 2.0637 22 1 -1.4061 -6.7044 3.9120 23 1 -1.9958 -6.0235 1.6604 24 6 3.8402 -1.6727 2.5477 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.0589 1.4675 0.3865 29 1 2.0279 1.8321 -1.0179 30 1 1.3967 2.0553 0.6314 31 1 1.8315 -1.7878 -1.1635 32 1 1.5369 -0.3223 -2.1300 33 1 3.1150 -0.5677 -1.3439 34 1 3.8124 0.3526 -0.2240 35 1 5.1238 0.1534 0.9700 36 1 4.0636 -2.1353 -0.7553 37 1 5.4704 -1.1382 -1.2117 38 1 6.7638 -2.4753 0.0861 39 1 5.8734 -1.8758 1.5075 40 1 5.3096 -4.3395 -0.1729 41 1 5.6082 -4.2398 1.5786 42 1 3.1510 -4.5494 0.8068 43 1 3.2360 -2.8477 0.2896 44 1 1.5062 -2.5093 3.1114 45 1 -1.5967 -3.6393 3.5831 46 1 3.4261 -1.2535 3.4647 47 1 4.9280 -1.6155 2.5855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088416328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = 16.509481 kcal Electronic energy + Delta-G solvation = -25606.063899 eV Core-core repulsion = 22404.945688 eV Total energy + Delta-G solvation = -3201.118210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64815 -37.52943 -35.83231 -34.13586 -33.50187 -31.75869 -29.36279 -27.56535 -27.34017 -26.76258 -25.96151 -23.78585 -22.92319 -21.82211 -20.19284 -19.36814 -17.63177 -17.00234 -16.29594 -15.79553 -15.34709 -14.90112 -14.39615 -14.25804 -14.09619 -13.72123 -13.50995 -13.02480 -12.90580 -12.50729 -12.25108 -12.15557 -12.09340 -11.83822 -11.65553 -11.45024 -11.37457 -11.23155 -10.86481 -10.84618 -10.67376 -10.64723 -10.59841 -10.20564 -10.18688 -10.02768 -9.90446 -9.60401 -9.25183 -8.63824 -8.59430 -7.90888 -6.53607 -5.42124 -2.68985 3.39333 3.54871 3.56636 3.61128 3.63445 4.73095 4.80137 4.91108 4.97378 5.01624 5.13447 5.22055 5.38129 5.45576 5.51496 5.56631 5.60074 5.62934 5.74711 5.80269 5.83869 5.89227 5.92669 6.00655 6.03999 6.04531 6.13079 6.18029 6.23494 6.24461 6.33383 6.39937 6.42318 6.51004 6.56407 6.77121 6.82701 6.90066 7.02493 7.17033 7.38890 7.93527 8.02463 8.71102 9.04152 9.89451 10.57644 11.01989 11.78134 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.007890 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.623633 B = 3547.737758 C = 4551.796048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.156 4.156 5 C 0.508 3.492 6 O -0.465 6.465 7 N -0.610 5.610 8 C 0.088 3.912 9 C -0.154 4.154 10 C -0.126 4.126 11 C -0.119 4.119 12 C -0.142 4.142 13 C 0.164 3.836 14 H 0.024 0.976 15 N -0.716 5.716 16 C -0.231 4.231 17 H 0.061 0.939 18 C -0.013 4.013 19 N -0.914 5.914 20 Si 0.891 3.109 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.296 1.296 24 C 0.110 3.890 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.404 0.596 45 H 0.247 0.753 46 H 0.061 0.939 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.679 10.431 -9.969 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 C -0.210 4.210 4 C -0.213 4.213 5 C 0.293 3.707 6 O -0.335 6.335 7 N -0.346 5.346 8 C -0.035 4.035 9 C -0.192 4.192 10 C -0.163 4.163 11 C -0.157 4.157 12 C -0.181 4.181 13 C 0.053 3.947 14 H 0.042 0.958 15 N -0.369 5.369 16 C -0.363 4.363 17 H 0.079 0.921 18 C -0.209 4.209 19 N -0.563 5.563 20 Si 0.724 3.276 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.013 4.013 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.249 0.751 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.128 10.098 -9.483 18.411 hybrid contribution -0.565 -0.951 -0.174 1.120 sum 11.563 9.147 -9.657 17.624 Atomic orbital electron populations 1.21641 0.92041 1.03453 1.01059 1.20690 0.97974 0.95503 0.94267 1.22185 1.01689 0.94763 1.02337 1.22344 1.01770 1.01281 0.95866 1.20439 0.81892 0.80252 0.88080 1.90672 1.53809 1.45985 1.42996 1.47817 1.05572 1.54724 1.26464 1.22517 0.92817 0.95941 0.92237 1.22660 1.00413 0.97962 0.98140 1.21876 0.97743 0.96777 0.99869 1.21539 0.97630 0.95975 1.00576 1.22506 0.93154 1.02402 1.00061 1.20769 0.88913 0.91740 0.93295 0.95840 1.43239 1.03981 1.13347 1.76374 1.19166 0.92257 0.89901 1.34955 0.92085 1.24664 0.96796 0.96499 1.02942 1.69776 1.08401 1.28232 1.49849 0.86348 0.79867 0.84316 0.77105 1.20977 1.22265 1.22339 1.21890 0.98181 0.92883 0.88332 0.91995 0.93090 0.91358 0.91312 0.91899 0.92038 0.91794 0.92285 0.90880 0.87983 0.91573 0.89353 0.91988 0.92988 0.91213 0.93253 0.92543 0.92080 0.90861 0.75097 0.94306 0.92049 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 7.65 37.16 0.28 -1.73 16 2 C -0.08 -1.18 0.75 -155.66 -0.12 -1.30 16 3 C -0.15 -1.70 8.04 37.16 0.30 -1.40 16 4 C -0.16 -1.98 7.06 37.16 0.26 -1.72 16 5 C 0.51 9.41 5.54 -10.98 -0.06 9.34 16 6 O -0.47 -11.34 11.91 5.56 0.07 -11.27 16 7 N -0.61 -9.48 1.71 -172.89 -0.30 -9.77 16 8 C 0.09 0.98 4.18 -3.37 -0.01 0.96 16 9 C -0.15 -1.68 4.40 -26.16 -0.12 -1.80 16 10 C -0.13 -1.45 5.48 -26.76 -0.15 -1.60 16 11 C -0.12 -1.71 5.67 -26.94 -0.15 -1.86 16 12 C -0.14 -2.65 4.81 -26.44 -0.13 -2.78 16 13 C 0.16 3.42 2.93 -67.49 -0.20 3.22 16 14 H 0.02 0.52 7.89 -51.93 -0.41 0.11 16 15 N -0.72 -19.24 4.35 -53.00 -0.23 -19.47 16 16 C -0.23 -6.80 9.20 -15.06 -0.14 -6.94 16 17 H 0.06 1.76 6.84 -52.48 -0.36 1.40 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.91 -29.53 13.06 55.49 0.72 -28.81 16 20 Si 0.89 23.74 29.55 -169.99 -5.02 18.71 16 21 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 23 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 24 C 0.11 1.89 4.85 -4.07 -0.02 1.87 16 25 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 26 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.07 0.70 5.15 -51.93 -0.27 0.43 16 29 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 30 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 31 H 0.06 0.99 7.57 -51.93 -0.39 0.59 16 32 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 33 H 0.07 0.78 3.62 -51.93 -0.19 0.59 16 34 H 0.10 1.00 2.77 -51.93 -0.14 0.85 16 35 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 36 H 0.09 1.16 4.00 -51.93 -0.21 0.95 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.80 4.49 -51.93 -0.23 0.57 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 42 H 0.06 1.33 6.57 -51.93 -0.34 0.99 16 43 H 0.07 1.36 3.19 -51.93 -0.17 1.20 16 44 H 0.40 11.76 4.50 -41.19 -0.19 11.57 16 45 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 47 H 0.08 1.11 5.07 -51.93 -0.26 0.85 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -34.53 324.47 -7.52 -42.05 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.31 Total: 9.88 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.34 Total: -6.20 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.20 Total: -58.05 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.53 -7.52 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088416328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.556 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds