Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.53004 * 109.47246 * 239.99465 * 2 1 3 5 5 C 1.50702 * 109.46708 * 120.00135 * 2 1 3 6 6 O 1.21279 * 120.00266 * 355.86206 * 5 2 1 7 7 N 1.34783 * 120.00096 * 175.86969 * 5 2 1 8 8 C 1.47145 * 120.18365 * 4.12763 * 7 5 2 9 9 C 1.53625 * 107.51006 * 252.11097 * 8 7 5 10 10 C 1.53484 * 108.45859 * 290.23772 * 9 8 7 11 11 C 1.52462 * 109.13392 * 114.22182 * 10 9 8 12 12 C 1.53123 * 109.68336 * 316.06461 * 11 10 9 13 13 C 1.53434 * 109.31532 * 282.96859 * 12 11 10 14 14 H 1.08999 * 109.63409 * 312.63666 * 13 12 11 15 15 N 1.46505 * 109.62870 * 192.04447 * 13 12 11 16 16 C 1.36935 * 119.99961 * 53.45049 * 15 13 12 17 17 H 1.08005 * 119.99860 * 359.97438 * 16 15 13 18 18 C 1.38803 * 120.00085 * 180.02562 * 16 15 13 19 19 N 1.31624 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00316 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46920 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47272 * 119.99480 * 20 18 16 23 23 H 1.48500 * 109.47356 * 239.99728 * 20 18 16 24 24 C 1.46054 * 120.18743 * 184.10709 * 7 5 2 25 25 H 1.09000 * 109.47102 * 300.00208 * 1 2 3 26 26 H 1.09007 * 109.46734 * 60.00577 * 1 2 3 27 27 H 1.09001 * 109.47485 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46684 * 157.90704 * 3 2 1 29 29 H 1.08998 * 109.47045 * 277.90520 * 3 2 1 30 30 H 1.08994 * 109.47362 * 37.90952 * 3 2 1 31 31 H 1.08998 * 109.47143 * 289.89177 * 4 2 1 32 32 H 1.09004 * 109.46697 * 49.89497 * 4 2 1 33 33 H 1.09000 * 109.46619 * 169.88842 * 4 2 1 34 34 H 1.09003 * 109.84779 * 11.60962 * 8 7 5 35 35 H 1.08993 * 109.84827 * 132.61196 * 8 7 5 36 36 H 1.09000 * 109.63392 * 49.93223 * 9 8 7 37 37 H 1.09000 * 109.63435 * 170.55047 * 9 8 7 38 38 H 1.09001 * 109.52759 * 234.11651 * 10 9 8 39 39 H 1.08996 * 109.53359 * 354.32877 * 10 9 8 40 40 H 1.09002 * 109.43873 * 76.12921 * 11 10 9 41 41 H 1.09004 * 109.44012 * 196.04379 * 11 10 9 42 42 H 1.09001 * 109.49764 * 163.01754 * 12 11 10 43 43 H 1.08995 * 109.49474 * 42.92241 * 12 11 10 44 44 H 0.96998 * 120.00062 * 233.44687 * 15 13 12 45 45 H 0.97003 * 119.99993 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.36118 * 306.75224 * 24 7 5 47 47 H 1.09003 * 109.36176 * 187.15450 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7105 1.2305 6 8 1.2467 -1.1053 2.0659 7 7 3.3545 -0.9070 1.4027 8 6 4.3169 -0.3509 0.4385 9 6 4.8825 -1.5227 -0.3782 10 6 5.7783 -2.3666 0.5390 11 6 5.1483 -3.7424 0.7247 12 6 3.6448 -3.5920 0.9730 13 6 3.4122 -3.1404 2.4208 14 1 4.0072 -3.7551 3.0962 15 7 1.9915 -3.2694 2.7544 16 6 1.3488 -4.4632 2.5623 17 1 1.8892 -5.3095 2.1645 18 6 0.0026 -4.5854 2.8778 19 7 -0.6560 -3.5538 3.3622 20 14 -0.8744 -6.2136 2.6151 21 1 0.0816 -7.2074 2.0637 22 1 -1.4061 -6.7044 3.9120 23 1 -1.9958 -6.0235 1.6604 24 6 3.8402 -1.6727 2.5477 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.0589 1.4675 0.3865 29 1 2.0279 1.8321 -1.0179 30 1 1.3967 2.0553 0.6314 31 1 1.8315 -1.7878 -1.1635 32 1 1.5369 -0.3223 -2.1300 33 1 3.1150 -0.5677 -1.3439 34 1 3.8124 0.3526 -0.2240 35 1 5.1238 0.1534 0.9700 36 1 4.0636 -2.1353 -0.7553 37 1 5.4704 -1.1382 -1.2117 38 1 6.7638 -2.4753 0.0861 39 1 5.8734 -1.8758 1.5075 40 1 5.3096 -4.3395 -0.1729 41 1 5.6082 -4.2398 1.5786 42 1 3.1510 -4.5494 0.8068 43 1 3.2360 -2.8477 0.2896 44 1 1.5062 -2.5093 3.1114 45 1 -1.5967 -3.6393 3.5831 46 1 3.4261 -1.2535 3.4647 47 1 4.9280 -1.6155 2.5855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088416328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = -6.556714 kcal Electronic energy + Delta-G solvation = -25607.064124 eV Core-core repulsion = 22404.945688 eV Total energy + Delta-G solvation = -3202.118436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94000 -38.87763 -37.24837 -35.81109 -34.79880 -33.61998 -31.09890 -28.92656 -28.35036 -28.14633 -27.18635 -25.63423 -24.41345 -23.04539 -21.41921 -20.79297 -19.17137 -18.84646 -17.50977 -17.22608 -16.85940 -16.47680 -15.93501 -15.58625 -15.45076 -15.13046 -14.80955 -14.47685 -14.39168 -13.94963 -13.61932 -13.35151 -13.25995 -13.08078 -13.03793 -12.89841 -12.80577 -12.60766 -12.56776 -12.44710 -12.25146 -12.09503 -11.85801 -11.80268 -11.69762 -11.34948 -11.21497 -11.09786 -10.84120 -10.76135 -10.10255 -9.29419 -8.72794 -7.76154 -5.01871 1.38778 1.40901 1.49992 2.01868 2.30467 2.59588 3.49458 3.60170 3.82611 3.93984 4.00904 4.04361 4.13205 4.21112 4.30486 4.31622 4.40350 4.56486 4.59632 4.67083 4.70243 4.73935 4.76861 4.81878 4.86859 4.92834 4.97581 4.98217 5.06346 5.11525 5.16797 5.19368 5.28550 5.30479 5.40827 5.45951 5.47310 5.54210 5.58354 5.63091 5.76708 5.93262 6.41532 6.73397 7.44944 7.68071 8.44346 8.77649 9.45249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.007890 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.623633 B = 3547.737758 C = 4551.796048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.146 4.146 4 C -0.148 4.148 5 C 0.495 3.505 6 O -0.537 6.537 7 N -0.602 5.602 8 C 0.080 3.920 9 C -0.152 4.152 10 C -0.120 4.120 11 C -0.112 4.112 12 C -0.131 4.131 13 C 0.151 3.849 14 H 0.017 0.983 15 N -0.732 5.732 16 C -0.225 4.225 17 H 0.061 0.939 18 C -0.082 4.082 19 N -0.954 5.954 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.295 1.295 23 H -0.299 1.299 24 C 0.118 3.882 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.392 0.608 45 H 0.239 0.761 46 H 0.033 0.967 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.133 12.018 -12.669 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.203 4.203 4 C -0.205 4.205 5 C 0.283 3.717 6 O -0.412 6.412 7 N -0.336 5.336 8 C -0.041 4.041 9 C -0.190 4.190 10 C -0.157 4.157 11 C -0.150 4.150 12 C -0.171 4.171 13 C 0.042 3.958 14 H 0.034 0.966 15 N -0.383 5.383 16 C -0.358 4.358 17 H 0.079 0.921 18 C -0.274 4.274 19 N -0.605 5.605 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.222 1.222 23 H -0.227 1.227 24 C -0.005 4.005 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.094 0.906 44 H 0.235 0.765 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.685 11.685 -12.233 23.070 hybrid contribution -1.537 -1.441 0.649 2.205 sum 14.148 10.244 -11.584 20.959 Atomic orbital electron populations 1.21598 0.94004 1.00419 1.01736 1.20737 0.96440 0.97896 0.93129 1.22174 1.02065 0.91461 1.04569 1.22328 1.03841 0.98692 0.95606 1.21326 0.82418 0.79494 0.88454 1.90641 1.55842 1.49118 1.45585 1.47897 1.05588 1.53590 1.26554 1.22951 0.92736 0.96506 0.91899 1.22636 0.99985 0.97318 0.99074 1.21857 0.98944 0.94457 1.00454 1.21473 0.93932 0.98646 1.00995 1.22355 0.96544 0.99932 0.98226 1.21081 0.85727 0.94686 0.94320 0.96610 1.43517 1.06331 1.12062 1.76414 1.19507 0.92553 0.90831 1.32892 0.92142 1.25453 0.97818 0.99961 1.04148 1.69990 1.08057 1.30416 1.52037 0.85276 0.78521 0.80616 0.76697 1.19444 1.22233 1.22674 1.21756 1.00343 0.90232 0.88206 0.94169 0.89400 0.96197 0.89709 0.88372 0.92848 0.95536 0.89670 0.88013 0.86062 0.88381 0.91782 0.88030 0.89980 0.90987 0.92211 0.92697 0.96398 0.90626 0.76456 0.95190 0.94839 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 7.65 71.98 0.55 -3.48 16 2 C -0.08 -2.22 0.75 -52.93 -0.04 -2.26 16 3 C -0.15 -2.73 8.04 71.98 0.58 -2.15 16 4 C -0.15 -3.42 7.06 71.98 0.51 -2.91 16 5 C 0.50 18.71 5.54 87.66 0.49 19.20 16 6 O -0.54 -28.06 11.91 -3.03 -0.04 -28.10 16 7 N -0.60 -17.92 1.71 -819.28 -1.40 -19.32 16 8 C 0.08 1.39 4.18 86.47 0.36 1.76 16 9 C -0.15 -2.57 4.40 30.97 0.14 -2.43 16 10 C -0.12 -2.19 5.48 30.58 0.17 -2.02 16 11 C -0.11 -2.96 5.67 30.46 0.17 -2.79 16 12 C -0.13 -4.97 4.81 30.78 0.15 -4.82 16 13 C 0.15 6.49 2.93 45.27 0.13 6.63 16 14 H 0.02 0.72 7.89 -2.39 -0.02 0.70 16 15 N -0.73 -41.59 4.35 -321.60 -1.40 -42.99 16 16 C -0.22 -13.93 9.20 84.03 0.77 -13.15 16 17 H 0.06 3.66 6.84 -2.91 -0.02 3.64 16 18 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 19 N -0.95 -65.38 13.06 21.65 0.28 -65.10 16 20 Si 0.96 51.17 29.55 68.60 2.03 53.20 16 21 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 23 H -0.30 -15.97 7.11 99.48 0.71 -15.27 16 24 C 0.12 4.00 4.85 86.60 0.42 4.43 16 25 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 26 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.32 5.15 -2.39 -0.01 1.31 16 29 H 0.10 1.20 7.95 -2.39 -0.02 1.18 16 30 H 0.05 1.11 7.94 -2.39 -0.02 1.09 16 31 H 0.03 0.80 7.57 -2.39 -0.02 0.78 16 32 H 0.08 1.54 8.11 -2.38 -0.02 1.52 16 33 H 0.10 1.71 3.62 -2.39 -0.01 1.71 16 34 H 0.12 1.69 2.77 -2.39 -0.01 1.68 16 35 H 0.10 1.23 7.97 -2.39 -0.02 1.21 16 36 H 0.06 1.46 4.00 -2.39 -0.01 1.45 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.28 4.49 -2.39 -0.01 1.27 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.47 7.85 -2.39 -0.02 1.45 16 42 H 0.02 0.79 6.57 -2.39 -0.02 0.78 16 43 H 0.08 2.82 3.19 -2.39 -0.01 2.82 16 44 H 0.39 24.45 4.50 -98.55 -0.44 24.01 16 45 H 0.24 15.96 8.31 -92.71 -0.77 15.19 16 46 H 0.03 1.33 8.01 -2.38 -0.02 1.31 16 47 H 0.12 3.08 5.07 -2.39 -0.01 3.07 16 Total: -1.00 -84.79 324.47 4.87 -79.92 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.54 Total: 31.17 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 4.86 Total: -8.77 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -2.52 Total: -127.42 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.04 Total: -28.10 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -84.79 4.87 -79.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088416328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.362 kcal (2) G-P(sol) polarization free energy of solvation -84.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds