Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46947 * 2 1 4 4 C 1.53004 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46765 * 55.00231 * 4 3 2 6 6 C 1.52996 * 109.46933 * 294.99843 * 4 3 2 7 7 C 1.53003 * 109.46822 * 174.99738 * 4 3 2 8 8 C 1.50697 * 109.46624 * 184.99795 * 7 4 3 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 4 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 4 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.53003 * 109.46708 * 180.02562 * 11 10 8 13 13 C 1.53782 * 113.60966 * 274.13343 * 12 11 10 14 14 C 1.53956 * 87.01867 * 220.05098 * 13 12 11 15 15 N 1.46498 * 113.74369 * 139.94515 * 14 13 12 16 16 C 1.36937 * 120.00172 * 107.40645 * 15 14 13 17 17 H 1.08000 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00172 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00169 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99932 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47570 * 90.00019 * 20 18 16 22 22 H 1.48507 * 109.47018 * 210.00178 * 20 18 16 23 23 H 1.48498 * 109.47357 * 329.99696 * 20 18 16 24 24 C 1.53777 * 87.11069 * 25.36308 * 14 13 12 25 25 H 1.09003 * 109.46889 * 59.99889 * 1 2 3 26 26 H 1.08997 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46853 * 300.00305 * 1 2 3 28 28 H 1.08996 * 109.46776 * 240.00365 * 2 1 3 29 29 H 1.08999 * 109.47221 * 119.99719 * 2 1 3 30 30 H 1.09002 * 109.47078 * 60.00093 * 3 2 1 31 31 H 1.08999 * 109.46931 * 299.99896 * 3 2 1 32 32 H 1.08997 * 109.47158 * 60.00731 * 6 4 3 33 33 H 1.09003 * 109.46558 * 180.02562 * 6 4 3 34 34 H 1.08994 * 109.47378 * 299.99841 * 6 4 3 35 35 H 1.09001 * 109.46782 * 65.00691 * 7 4 3 36 36 H 1.08993 * 109.47555 * 305.00248 * 7 4 3 37 37 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 38 38 H 1.08998 * 109.47134 * 299.99552 * 11 10 8 39 39 H 1.08994 * 109.47397 * 59.99843 * 11 10 8 40 40 H 1.08999 * 112.85112 * 45.32920 * 12 11 10 41 41 H 1.09000 * 113.61464 * 334.56613 * 13 12 11 42 42 H 1.08999 * 113.61337 * 105.47433 * 13 12 11 43 43 H 1.09005 * 113.54041 * 270.81392 * 14 13 12 44 44 H 0.97003 * 120.00082 * 287.39658 * 15 14 13 45 45 H 0.96998 * 119.99484 * 179.97438 * 19 18 16 46 46 H 1.09007 * 113.61722 * 220.08879 * 24 14 13 47 47 H 1.09007 * 113.61442 * 89.18824 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8428 6 6 4.0806 0.8328 1.3064 7 6 4.0799 2.8796 -0.1264 8 6 5.5818 2.8706 -0.2505 9 8 6.1854 1.8188 -0.2346 10 7 6.2548 4.0319 -0.3733 11 6 7.7153 4.0235 -0.4880 12 6 8.2251 5.4606 -0.6138 13 6 8.2246 5.9901 -2.0576 14 6 9.5744 6.6540 -1.7293 15 7 10.5513 6.5741 -2.8181 16 6 10.8619 7.6936 -3.5429 17 1 10.3862 8.6354 -3.3122 18 6 11.7879 7.6180 -4.5742 19 7 12.0860 8.6941 -5.2712 20 14 12.6111 5.9893 -4.9727 21 1 11.8008 5.2584 -5.9800 22 1 13.9691 6.2414 -5.5183 23 1 12.7180 5.1731 -3.7368 24 6 9.7585 5.5687 -0.6555 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7174 -0.1910 1.3959 33 1 5.1706 0.8332 1.3061 34 1 3.7176 1.4221 2.1484 35 1 3.7920 3.4461 0.7592 36 1 3.6450 3.3434 -1.0117 37 1 5.7721 4.8733 -0.3858 38 1 8.1468 3.5618 0.4000 39 1 8.0071 3.4554 -1.3712 40 1 7.7588 6.1392 0.1003 41 1 8.2959 5.2052 -2.8106 42 1 7.4249 6.7021 -2.2613 43 1 9.4769 7.6600 -1.3211 44 1 10.9783 5.7281 -3.0255 45 1 12.7334 8.6412 -5.9916 46 1 10.1954 5.9410 0.2712 47 1 10.2499 4.6683 -1.0245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100175923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = -39.018249 kcal Electronic energy + Delta-G solvation = -21730.783350 eV Core-core repulsion = 18527.257277 eV Total energy + Delta-G solvation = -3203.526073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08059 -38.70545 -36.99927 -34.75391 -33.34307 -32.97541 -30.80482 -28.95915 -26.94498 -26.70662 -25.21915 -23.69746 -22.37648 -20.99380 -20.71075 -20.04482 -19.26585 -17.44544 -17.10456 -16.23500 -15.86705 -15.56187 -15.08817 -14.74441 -14.46088 -14.18590 -13.93872 -13.83970 -13.50505 -13.21486 -12.69450 -12.59452 -12.32856 -12.18881 -12.00092 -11.95733 -11.79452 -11.62747 -11.55776 -11.24479 -11.00564 -10.90604 -10.87156 -10.72898 -10.49971 -10.32426 -10.15421 -9.88527 -9.69912 -9.53225 -9.05408 -8.90610 -7.28645 -5.80084 -3.15625 2.58386 3.12652 3.36454 3.39734 3.44390 4.39618 4.47791 4.56114 4.56778 4.80060 4.81822 4.87356 4.89535 4.99066 5.10257 5.19218 5.24279 5.35508 5.37706 5.38772 5.40341 5.48316 5.54923 5.60978 5.64483 5.71598 5.72083 5.78024 5.82455 5.85982 5.88307 5.97979 6.15113 6.16215 6.17941 6.21362 6.26581 6.41935 6.48887 6.67283 6.96214 7.44502 7.96273 8.17883 8.39794 9.17580 9.90405 10.10192 11.38076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.002377 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.994143 B =11778.340449 C =11909.170409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.138 4.138 8 C 0.509 3.491 9 O -0.541 6.541 10 N -0.728 5.728 11 C 0.132 3.868 12 C -0.126 4.126 13 C -0.161 4.161 14 C 0.172 3.828 15 N -0.737 5.737 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.145 4.145 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 -13.725 14.103 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.178 4.178 8 C 0.295 3.705 9 O -0.418 6.418 10 N -0.379 5.379 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.202 4.202 14 C 0.060 3.940 15 N -0.377 5.377 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.185 4.185 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.841 -14.220 13.990 28.849 hybrid contribution 0.390 -0.616 -0.449 0.856 sum -20.452 -14.836 13.541 28.666 Atomic orbital electron populations 1.21784 0.96041 1.01502 1.01700 1.21576 0.95568 0.96970 1.02295 1.21688 0.94677 0.96999 1.01953 1.20902 0.94432 0.94265 0.99897 0.90406 1.21993 1.03114 1.00164 0.95829 1.21773 0.92195 0.99738 1.04125 1.20720 0.90135 0.83689 0.75920 1.90669 1.70486 1.30926 1.49761 1.46110 1.08296 1.08845 1.74661 1.21397 0.78913 0.97114 1.01751 1.22633 0.97713 0.94778 0.99449 1.23933 1.01381 1.00708 0.94142 1.21538 0.88323 0.96177 0.87938 1.42762 1.48446 1.09197 1.37250 1.19137 1.19633 0.89320 1.09743 0.89138 1.24700 0.99417 0.96718 0.98310 1.69707 1.37233 1.27190 1.23884 0.86553 0.79320 0.84541 0.78143 1.21046 1.21675 1.20278 1.23464 0.93601 1.00962 1.00493 0.92811 0.92896 0.92852 0.92017 0.91708 0.91963 0.91978 0.92792 0.90718 0.93508 0.89035 0.88966 0.76595 0.91866 0.91458 0.89145 0.90498 0.92297 0.89846 0.80450 0.93027 0.91650 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.83 5.69 -26.73 -0.15 -0.98 16 3 C -0.12 -0.76 4.68 -26.73 -0.13 -0.88 16 4 C -0.08 -0.64 2.04 -90.62 -0.18 -0.82 16 5 H 0.08 0.79 7.96 -51.93 -0.41 0.37 16 6 C -0.15 -1.39 8.69 37.16 0.32 -1.06 16 7 C -0.14 -1.07 5.18 -27.88 -0.14 -1.22 16 8 C 0.51 5.77 7.55 -10.98 -0.08 5.69 16 9 O -0.54 -8.20 13.96 5.56 0.08 -8.13 16 10 N -0.73 -7.50 5.56 -60.30 -0.33 -7.84 16 11 C 0.13 1.61 5.50 -4.04 -0.02 1.59 16 12 C -0.13 -1.56 3.75 -89.81 -0.34 -1.89 16 13 C -0.16 -2.47 7.45 -25.83 -0.19 -2.67 16 14 C 0.17 3.14 4.48 -67.03 -0.30 2.84 16 15 N -0.74 -17.21 5.21 -52.55 -0.27 -17.48 16 16 C -0.25 -6.95 10.45 -15.06 -0.16 -7.11 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 20 Si 0.88 22.15 27.73 -169.99 -4.71 17.44 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 24 C -0.15 -2.14 7.39 -25.92 -0.19 -2.33 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 33 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.40 3.12 8.47 -40.82 -0.35 2.77 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 44 H 0.36 8.38 5.79 -40.82 -0.24 8.14 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.19 8.08 -51.92 -0.42 0.77 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -32.47 370.89 -8.91 -41.38 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.73 Total: 6.78 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.29 Total: -9.32 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.17 Total: -53.74 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.47 -8.91 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100175923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.357 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds