Wall clock time and date at job start Tue Mar 31 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47365 * 2 1 4 4 C 1.52999 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46929 * 304.99025 * 4 3 2 6 6 C 1.52997 * 109.47317 * 64.99921 * 4 3 2 7 7 C 1.53006 * 109.46623 * 184.99741 * 4 3 2 8 8 C 1.50703 * 109.46967 * 174.99771 * 7 4 3 9 9 O 1.21279 * 119.99679 * 0.02562 * 8 7 4 10 10 N 1.34770 * 119.99899 * 179.97438 * 8 7 4 11 11 C 1.46502 * 119.99979 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47415 * 180.02562 * 11 10 8 13 13 C 1.53780 * 113.61490 * 274.14173 * 12 11 10 14 14 C 1.53959 * 87.02229 * 220.04686 * 13 12 11 15 15 N 1.46495 * 113.74490 * 139.94080 * 14 13 12 16 16 C 1.36940 * 119.99594 * 107.40191 * 15 14 13 17 17 H 1.07993 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99698 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00171 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00006 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47271 * 120.00414 * 20 18 16 23 23 H 1.48503 * 109.47146 * 240.00531 * 20 18 16 24 24 C 1.53780 * 113.61599 * 176.53346 * 12 11 10 25 25 H 1.08996 * 109.46735 * 60.00285 * 1 2 3 26 26 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47265 * 300.00368 * 1 2 3 28 28 H 1.08994 * 109.47265 * 239.99632 * 2 1 3 29 29 H 1.09000 * 109.47173 * 119.99887 * 2 1 3 30 30 H 1.08994 * 109.47229 * 59.99610 * 3 2 1 31 31 H 1.08998 * 109.46376 * 300.00050 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 34 34 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 35 35 H 1.09001 * 109.47326 * 294.99995 * 7 4 3 36 36 H 1.09000 * 109.46904 * 55.00348 * 7 4 3 37 37 H 0.96996 * 120.00204 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47429 * 300.00526 * 11 10 8 39 39 H 1.09009 * 109.46779 * 60.00162 * 11 10 8 40 40 H 1.08994 * 112.84901 * 45.33439 * 12 11 10 41 41 H 1.09006 * 113.61629 * 334.56533 * 13 12 11 42 42 H 1.09003 * 113.61916 * 105.46827 * 13 12 11 43 43 H 1.09000 * 113.53507 * 270.81238 * 14 13 12 44 44 H 0.97001 * 120.00296 * 287.40618 * 15 14 13 45 45 H 0.96998 * 120.00002 * 179.97438 * 19 18 16 46 46 H 1.09000 * 113.61437 * 254.53230 * 24 12 11 47 47 H 1.08999 * 113.61693 * 25.43541 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8330 -1.3083 7 6 4.0801 2.8795 0.1250 8 6 5.5821 2.8705 0.2480 9 8 6.1852 1.8183 0.2358 10 7 6.2551 4.0316 0.3704 11 6 7.7152 4.0229 0.4905 12 6 8.2253 5.4598 0.6161 13 6 8.4506 6.1540 -0.7375 14 6 9.7243 6.7622 -0.1227 15 7 10.8634 6.8004 -1.0431 16 6 11.2752 7.9939 -1.5736 17 1 10.7605 8.9068 -1.3131 18 6 12.3548 8.0302 -2.4454 19 7 12.9824 6.9175 -2.7625 20 14 12.9171 9.6582 -3.1685 21 1 12.0524 10.7518 -2.6573 22 1 14.3252 9.9153 -2.7734 23 1 12.8209 9.6016 -4.6493 24 6 9.7446 5.5575 0.8329 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.7162 -0.1908 -1.3978 33 1 5.1695 0.8333 -1.3088 34 1 3.7159 1.4225 -2.1499 35 1 3.7914 3.4462 -0.7602 36 1 3.6459 3.3429 1.0109 37 1 5.7728 4.8731 0.3798 38 1 8.0036 3.4566 1.3762 39 1 8.1498 3.5587 -0.3949 40 1 7.6446 6.0550 1.3206 41 1 8.6485 5.4615 -1.5558 42 1 7.6871 6.8925 -0.9820 43 1 9.5534 7.7147 0.3790 44 1 11.3258 5.9804 -1.2769 45 1 13.7366 6.9428 -3.3719 46 1 10.0242 5.8150 1.8544 47 1 10.2970 4.7017 0.4448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100175924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:07 Heat of formation + Delta-G solvation = -43.252609 kcal Electronic energy + Delta-G solvation = -21680.224228 eV Core-core repulsion = 18476.514539 eV Total energy + Delta-G solvation = -3203.709689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01091 -38.56464 -36.95104 -34.64753 -33.28925 -32.94091 -30.36056 -28.77864 -26.87429 -26.55910 -25.09211 -23.86230 -22.38262 -21.04780 -20.66147 -19.97260 -19.02495 -17.16624 -16.93522 -16.12091 -15.90048 -15.50260 -14.87096 -14.74514 -14.39442 -14.27317 -13.75535 -13.66092 -13.41310 -13.23217 -12.95413 -12.54377 -12.24304 -11.92260 -11.88611 -11.80225 -11.75865 -11.39416 -11.25143 -11.19383 -10.94856 -10.86011 -10.83170 -10.69381 -10.51477 -10.22614 -10.11280 -9.83229 -9.69112 -9.46185 -8.97867 -8.87604 -6.97022 -5.79242 -3.08132 2.64568 3.19472 3.41669 3.47128 3.49589 4.43393 4.52462 4.57469 4.59593 4.85326 4.86756 4.96323 4.98969 5.06384 5.20613 5.24718 5.29507 5.40704 5.41540 5.46060 5.50752 5.52311 5.59169 5.64944 5.74079 5.82933 5.84502 5.88986 5.90794 5.94277 6.02444 6.08696 6.19601 6.25733 6.30362 6.34720 6.37159 6.50475 6.59146 6.82804 7.10918 7.51257 7.68632 8.24415 8.39315 9.50382 10.08864 10.42968 11.43185 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037480 B = 0.002245 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.890174 B =12470.477371 C =12634.778602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.508 3.492 9 O -0.541 6.541 10 N -0.728 5.728 11 C 0.132 3.868 12 C -0.127 4.127 13 C -0.161 4.161 14 C 0.166 3.834 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.399 0.601 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.061 0.939 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.501 -9.756 7.897 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.178 4.178 8 C 0.295 3.705 9 O -0.418 6.418 10 N -0.379 5.379 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.202 4.202 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.182 4.182 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.972 -10.314 7.817 26.367 hybrid contribution 0.239 1.067 -0.541 1.220 sum -22.733 -9.247 7.276 25.598 Atomic orbital electron populations 1.21781 0.96069 1.01483 1.01677 1.21576 0.95533 0.96992 1.02312 1.21685 0.94735 0.96972 1.01915 1.20896 0.94363 0.94257 0.99912 0.90470 1.22001 1.03229 1.00143 0.95821 1.21776 0.92258 0.99734 1.04067 1.20704 0.90102 0.83735 0.75987 1.90670 1.70506 1.30914 1.49708 1.46112 1.08391 1.08739 1.74630 1.21412 0.78816 0.97147 1.01786 1.22629 0.97578 0.94393 1.00011 1.23968 1.01057 0.99827 0.95343 1.21553 0.87729 0.94946 0.90428 1.42420 1.33403 1.07745 1.51491 1.19353 1.10450 0.86930 1.20775 0.91033 1.24779 0.98657 0.97043 1.00515 1.69672 1.23892 1.25353 1.39058 0.86116 0.78281 0.83051 0.78720 1.20539 1.21843 1.21860 1.23442 0.93366 1.01012 1.00395 0.92820 0.92907 0.92879 0.91648 0.92062 0.92068 0.91932 0.92800 0.90638 0.93423 0.88978 0.89129 0.76691 0.91924 0.91338 0.89461 0.90401 0.92811 0.90708 0.78066 0.93492 0.92022 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.85 5.69 -26.73 -0.15 -1.00 16 3 C -0.12 -0.79 4.68 -26.73 -0.13 -0.91 16 4 C -0.08 -0.66 2.04 -90.62 -0.18 -0.84 16 5 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 6 C -0.15 -1.53 8.69 37.16 0.32 -1.21 16 7 C -0.14 -1.13 5.17 -27.88 -0.14 -1.28 16 8 C 0.51 6.05 7.55 -10.99 -0.08 5.97 16 9 O -0.54 -8.53 13.96 5.56 0.08 -8.45 16 10 N -0.73 -7.98 5.56 -60.29 -0.33 -8.32 16 11 C 0.13 1.73 5.50 -4.04 -0.02 1.70 16 12 C -0.13 -1.68 3.75 -89.81 -0.34 -2.01 16 13 C -0.16 -2.63 7.45 -25.83 -0.19 -2.83 16 14 C 0.17 3.19 4.48 -67.02 -0.30 2.89 16 15 N -0.71 -17.79 5.41 -52.55 -0.28 -18.08 16 16 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C -0.14 -2.26 7.40 -25.92 -0.19 -2.45 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.49 6.56 -51.93 -0.34 0.14 16 33 H 0.07 0.96 5.95 -51.93 -0.31 0.65 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.40 3.35 8.47 -40.82 -0.35 3.00 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.04 7.88 -51.92 -0.41 0.63 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 44 H 0.39 10.27 7.92 -40.82 -0.32 9.94 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -31.65 374.01 -9.27 -40.91 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.78 Total: 8.38 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.29 Total: -9.89 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.11 Total: -53.88 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.65 -9.27 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100175924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.340 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds