Wall clock time and date at job start Tue Mar 31 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 C 1.53006 * 109.46846 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 3 7 7 C 1.53002 * 109.47233 * 65.00509 * 5 4 3 8 8 C 1.50703 * 109.46912 * 185.00257 * 5 4 3 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 5 4 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 5 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 C 1.53787 * 113.61519 * 274.13553 * 12 11 10 14 14 C 1.53950 * 87.01901 * 220.04908 * 13 12 11 15 15 N 1.46498 * 113.53675 * 270.80657 * 14 13 12 16 16 C 1.36934 * 120.00313 * 252.49663 * 15 14 13 17 17 H 1.07998 * 120.00032 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00273 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99579 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00308 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46804 * 59.99892 * 20 18 16 22 22 H 1.48493 * 109.47053 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47124 * 300.00251 * 20 18 16 24 24 C 1.53777 * 87.11423 * 25.36128 * 14 13 12 25 25 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 26 26 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 27 27 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 29 29 H 1.09001 * 109.47241 * 120.00519 * 2 1 3 30 30 H 1.09002 * 109.47069 * 60.00566 * 3 2 1 31 31 H 1.09001 * 109.47624 * 300.00284 * 3 2 1 32 32 H 1.09002 * 109.46824 * 60.00417 * 4 3 2 33 33 H 1.08991 * 109.47210 * 300.00501 * 4 3 2 34 34 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 36 36 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 37 37 H 0.97005 * 119.99463 * 359.97438 * 10 8 5 38 38 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 39 39 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 40 40 H 1.09000 * 112.85241 * 45.33204 * 12 11 10 41 41 H 1.09005 * 113.61080 * 334.56801 * 13 12 11 42 42 H 1.08995 * 113.61140 * 105.46656 * 13 12 11 43 43 H 1.09008 * 113.74543 * 139.94073 * 14 13 12 44 44 H 0.97004 * 119.99970 * 72.49922 * 15 14 13 45 45 H 0.96996 * 119.99461 * 180.02562 * 19 18 16 46 46 H 1.09000 * 113.61641 * 220.08846 * 24 14 13 47 47 H 1.09004 * 113.61823 * 89.18964 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 3.6748 3.5698 1.3068 8 6 5.5820 2.8868 -0.1233 9 8 6.1851 1.8376 -0.2023 10 7 6.2550 4.0543 -0.1446 11 6 7.7150 4.0560 -0.2650 12 6 8.2250 5.4985 -0.2656 13 6 8.2194 6.1534 -1.6570 14 6 9.5706 6.7856 -1.2764 15 7 9.4420 8.0840 -0.6103 16 6 9.7769 9.2320 -1.2774 17 1 10.1363 9.1802 -2.2945 18 6 9.6556 10.4623 -0.6460 19 7 9.2191 10.5252 0.5941 20 14 10.1118 12.0283 -1.5563 21 1 9.2635 12.1616 -2.7678 22 1 9.8934 13.1984 -0.6685 23 1 11.5407 11.9699 -1.9566 24 6 9.7583 5.6098 -0.3032 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9288 0.8907 34 1 4.0376 4.5976 1.3062 35 1 2.5884 3.5686 1.3960 36 1 4.1090 3.0312 2.1491 37 1 5.7726 4.8934 -0.0811 38 1 8.1497 3.5169 0.5768 39 1 8.0034 3.5687 -1.1964 40 1 7.7616 6.1116 0.5074 41 1 8.2875 5.4379 -2.4766 42 1 7.4192 6.8806 -1.7940 43 1 10.2945 6.7978 -2.0913 44 1 9.1196 8.1305 0.3034 45 1 9.1339 11.3849 1.0352 46 1 10.1987 5.8989 0.6510 47 1 10.2480 4.7455 -0.7519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100297025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:48 Heat of formation + Delta-G solvation = -44.292030 kcal Electronic energy + Delta-G solvation = -21840.482799 eV Core-core repulsion = 18636.728038 eV Total energy + Delta-G solvation = -3203.754762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03713 -38.58816 -36.57313 -34.63459 -33.66906 -33.10798 -30.21901 -28.98840 -27.26665 -25.37234 -25.06413 -23.78003 -22.61846 -21.60612 -21.10500 -19.85921 -18.37429 -17.40098 -16.88989 -16.12405 -15.92853 -15.41426 -14.93313 -14.45245 -14.42482 -13.95889 -13.82932 -13.71146 -13.43542 -13.18990 -12.88346 -12.78952 -12.47356 -12.23916 -11.97154 -11.91745 -11.56580 -11.39082 -11.22749 -11.17791 -11.05882 -10.90499 -10.84313 -10.70940 -10.49096 -10.22159 -10.06280 -9.70697 -9.68563 -9.42127 -8.96140 -8.88606 -7.02063 -5.82614 -3.11655 2.67071 3.23047 3.41030 3.45570 3.46463 4.43307 4.52396 4.54087 4.62333 4.81921 4.88424 4.91182 5.05231 5.07440 5.17540 5.21092 5.28401 5.37425 5.43633 5.44835 5.51140 5.60392 5.62480 5.66650 5.70747 5.71495 5.79269 5.86596 5.89166 5.94365 5.97632 6.09574 6.11910 6.17397 6.20648 6.36272 6.46275 6.59020 6.73203 6.89531 7.03100 7.55993 7.66713 8.26112 8.36648 9.47180 10.04772 10.39039 11.39732 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.002478 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.952015 B =11295.495981 C =11843.705053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.096 0.904 7 C -0.146 4.146 8 C 0.513 3.487 9 O -0.548 6.548 10 N -0.724 5.724 11 C 0.130 3.870 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.705 5.705 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.148 4.148 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -17.724 -0.083 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.133 4.133 6 H 0.114 0.886 7 C -0.204 4.204 8 C 0.299 3.701 9 O -0.425 6.425 10 N -0.375 5.375 11 C 0.007 3.993 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.741 -18.292 -0.238 22.880 hybrid contribution -0.151 1.363 -0.107 1.375 sum -13.892 -16.930 -0.345 21.903 Atomic orbital electron populations 1.21782 0.95994 1.01490 1.01754 1.21527 0.95659 0.96979 1.02145 1.21701 0.95195 0.96861 1.02170 1.21403 0.94649 0.94233 1.03469 1.21344 0.92122 0.99283 1.00583 0.88593 1.21835 1.02249 1.00439 0.95837 1.20677 0.89916 0.83674 0.75807 1.90677 1.70457 1.31528 1.49887 1.46106 1.08386 1.08648 1.74343 1.21460 0.78921 0.97456 1.01455 1.22701 0.97584 0.93706 0.99795 1.23909 1.02776 0.99669 0.94567 1.21094 0.93929 0.85464 0.94033 1.42161 1.77636 0.99753 1.14850 1.19249 1.36619 0.84739 0.96790 0.91044 1.24770 1.02018 0.97743 0.96376 1.69653 1.52370 1.24539 1.11531 0.86234 0.78251 0.82943 0.78556 1.21225 1.21684 1.21193 1.23438 0.93995 0.99845 1.01489 0.92796 0.92795 0.92904 0.92019 0.92019 0.91674 0.91982 0.91189 0.91357 0.91963 0.91247 0.92084 0.76382 0.91976 0.91722 0.88960 0.91460 0.91537 0.91970 0.78121 0.93392 0.91339 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.88 4.97 -26.73 -0.13 -1.01 16 4 C -0.10 -0.92 4.03 -26.73 -0.11 -1.03 16 5 C -0.11 -1.04 2.72 -91.77 -0.25 -1.29 16 6 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 8 C 0.51 6.61 7.15 -10.98 -0.08 6.53 16 9 O -0.55 -9.10 15.92 5.56 0.09 -9.01 16 10 N -0.72 -8.83 5.45 -60.30 -0.33 -9.16 16 11 C 0.13 1.77 5.50 -4.05 -0.02 1.75 16 12 C -0.12 -1.77 3.62 -89.81 -0.33 -2.10 16 13 C -0.17 -2.77 7.44 -25.83 -0.19 -2.97 16 14 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 15 N -0.71 -17.23 5.31 -52.55 -0.28 -17.51 16 16 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.74 7.96 -51.93 -0.41 0.32 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.48 7.56 -51.93 -0.39 0.08 16 35 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 4.25 7.89 -40.82 -0.32 3.93 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.07 1.01 7.92 -51.93 -0.41 0.59 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.22 8.10 -51.92 -0.42 0.79 16 44 H 0.38 9.93 7.90 -40.82 -0.32 9.61 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -30.90 376.58 -9.29 -40.20 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.84 Total: 9.09 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.31 Total: -9.41 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.12 Total: -53.57 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.90 -9.29 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100297025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.097 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds